Gcaud8105.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8105.t1
Unique Name	Gcaud8105.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1070_length_14265_cov_4.638281	contig	NODE_1070_length_14265_cov_4.638281:462..2084 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8105	Gcaud8105	Gracilaria caudata M_176_S67 male	gene	NODE_1070_length_14265_cov_4.638281 462..2084 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8105.t1.stop1	Gcaud8105.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1070_length_14265_cov_4.638281 462..464 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8105.t1.CDS1	Gcaud8105.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1070_length_14265_cov_4.638281 462..2084 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8105.t1.exon1	Gcaud8105.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1070_length_14265_cov_4.638281 462..2084 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8105.t1.start1	Gcaud8105.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1070_length_14265_cov_4.638281 2082..2084 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8105.t1	Gcaud8105.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1070_length_14265_cov_4.638281 462..2084 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1070_length_14265_cov_4.638281:462..2084-
coding sequence from alignment at NODE_1070_length_14265_cov_4.638281:462..2084-

mRNA sequence

>Gcaud8105.t1 ID=Gcaud8105.t1|Name=Gcaud8105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=541bp
MVVPFQPTGVTYFNSVFDRTISNVVFSGFLAFLVLLELENVTEVFMYRAH
NINKRSLDQYILFSRVSSMRGMLQTLSGLEYPAREVSTQPPRTSRGFLSR
CFGFGARSADADANQPPSVKQAPDAADGSVNGDTTTVADTDHSLSDEESQ
LPDMSEKLRRIGIPERDGVPRPRVKRYRLIAPIAIRFVVLLLELAAIYSS
SNITDNVLAGRSFNVRLERDNNSVSVAAVRNSQCREFIENARGVEQNGTV
LLCIDSEENRDLSTRRENTSVSFRFDPTENVMEYVVEDRFVMTTRVYARV
LINLISDDDVQLAPLRPDLDVDSNYSKRVIKGVMNRALNSLGFNVTLSQI
RERVDESDVITYDYGRFFDEASRDEIGDALLSELQSFTLALNVTQDDEED
VLYAFKAGRGYFRHEDPVIAVVGRNRLAQGWLIIAWVALLIVRLIAQRFF
TVFDELAYPAVKKVHGADLSIGPLARVPKHDTLYISKFSDGRVGHIGYRP
ANERQDRVSNFHGCEIVLGSGEQLLQRQRQRSARPATMAA*

spliced messenger RNA

>Gcaud8105.t1 ID=Gcaud8105.t1|Name=Gcaud8105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_1070_length_14265_cov_4.638281:462..2084- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTGCCGTTCCAGCCCACGGGCGTCACCTACTTCAACAGTGTCTT
TGACCGCACCATCTCCAATGTGGTCTTCAGCGGCTTTCTCGCCTTTTTGG
TGCTTCTCGAGTTGGAGAACGTCACCGAGGTGTTCATGTACCGCGCCCAC
AACATCAACAAACGCTCCCTCGATCAATACATCCTCTTCTCACGCGTGTC
CAGCATGAGAGGCATGCTACAAACACTGTCCGGCCTAGAGTACCCTGCGC
GCGAGGTCAGCACGCAACCGCCGCGAACCTCGCGCGGGTTTTTGTCGCGT
TGCTTCGGCTTTGGGGCGCGCTCTGCCGACGCTGATGCAAACCAGCCGCC
GTCGGTGAAGCAGGCGCCGGACGCTGCTGACGGAAGCGTCAATGGTGATA
CTACCACCGTGGCGGACACGGACCATTCGTTGTCGGATGAGGAATCTCAG
TTACCCGATATGTCCGAGAAGTTACGTCGCATTGGCATCCCCGAACGTGA
TGGTGTGCCACGTCCGCGCGTGAAGCGATATCGATTGATTGCGCCCATTG
CCATTCGTTTCGTGGTGCTGTTGTTGGAACTGGCTGCCATTTACTCCAGT
TCCAATATCACTGACAACGTTCTTGCCGGTCGTTCGTTTAATGTGCGTCT
CGAGCGGGATAACAACTCCGTCAGTGTGGCCGCGGTGCGGAACTCTCAGT
GTCGTGAATTTATCGAAAATGCGCGTGGTGTGGAACAGAATGGTACCGTG
TTGTTGTGCATCGACAGCGAGGAGAATCGAGACTTGTCCACTCGTCGAGA
AAACACCTCCGTGTCGTTCCGTTTTGACCCCACTGAAAATGTTATGGAGT
ATGTGGTGGAGGACAGGTTTGTGATGACCACGCGCGTGTACGCGCGAGTA
CTCATCAACCTGATCAGTGACGATGACGTGCAGTTGGCACCATTGCGTCC
GGACTTGGACGTGGACAGTAATTATTCCAAACGAGTCATCAAGGGAGTGA
TGAACCGCGCGTTGAACAGTTTGGGTTTCAATGTCACATTGTCACAAATC
CGCGAGCGAGTGGATGAGAGCGACGTGATTACCTACGATTACGGACGCTT
CTTTGACGAGGCCAGTCGCGACGAGATTGGTGACGCATTACTGTCCGAGC
TGCAAAGCTTCACGCTCGCACTCAACGTCACGCAGGACGACGAGGAAGAC
GTGCTGTACGCGTTCAAAGCAGGACGCGGCTACTTCCGACACGAGGACCC
GGTGATCGCCGTGGTGGGGCGCAATCGACTGGCACAGGGATGGCTCATCA
TCGCGTGGGTGGCACTGCTCATCGTGCGACTGATTGCGCAGCGTTTCTTC
ACGGTGTTCGACGAACTGGCATACCCCGCCGTGAAGAAGGTGCACGGCGC
AGACCTATCGATAGGACCTTTGGCGCGTGTGCCCAAACACGACACGCTGT
ACATCAGCAAGTTCTCGGACGGGCGCGTGGGACACATCGGATATCGCCCC
GCAAACGAGCGTCAGGACCGCGTGTCCAACTTCCACGGCTGTGAAATCGT
TCTCGGCTCGGGCGAGCAATTGCTACAGCGCCAACGCCAACGTAGCGCGC
GGCCGGCGACGATGGCCGCTTGA

protein sequence of Gcaud8105.t1

>Gcaud8105.t1 ID=Gcaud8105.t1|Name=Gcaud8105.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=541bp
MVVPFQPTGVTYFNSVFDRTISNVVFSGFLAFLVLLELENVTEVFMYRAH
NINKRSLDQYILFSRVSSMRGMLQTLSGLEYPAREVSTQPPRTSRGFLSR
CFGFGARSADADANQPPSVKQAPDAADGSVNGDTTTVADTDHSLSDEESQ
LPDMSEKLRRIGIPERDGVPRPRVKRYRLIAPIAIRFVVLLLELAAIYSS
SNITDNVLAGRSFNVRLERDNNSVSVAAVRNSQCREFIENARGVEQNGTV
LLCIDSEENRDLSTRRENTSVSFRFDPTENVMEYVVEDRFVMTTRVYARV
LINLISDDDVQLAPLRPDLDVDSNYSKRVIKGVMNRALNSLGFNVTLSQI
RERVDESDVITYDYGRFFDEASRDEIGDALLSELQSFTLALNVTQDDEED
VLYAFKAGRGYFRHEDPVIAVVGRNRLAQGWLIIAWVALLIVRLIAQRFF
TVFDELAYPAVKKVHGADLSIGPLARVPKHDTLYISKFSDGRVGHIGYRP
ANERQDRVSNFHGCEIVLGSGEQLLQRQRQRSARPATMAA*

mRNA from alignment at NODE_1070_length_14265_cov_4.638281:462..2084-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8105.t1 ID=Gcaud8105.t1|Name=Gcaud8105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_1070_length_14265_cov_4.638281:462..2084- (Gracilaria caudata M_176_S67 male)
ATGGTTGTGCCGTTCCAGCCCACGGGCGTCACCTACTTCAACAGTGTCTT
TGACCGCACCATCTCCAATGTGGTCTTCAGCGGCTTTCTCGCCTTTTTGG
TGCTTCTCGAGTTGGAGAACGTCACCGAGGTGTTCATGTACCGCGCCCAC
AACATCAACAAACGCTCCCTCGATCAATACATCCTCTTCTCACGCGTGTC
CAGCATGAGAGGCATGCTACAAACACTGTCCGGCCTAGAGTACCCTGCGC
GCGAGGTCAGCACGCAACCGCCGCGAACCTCGCGCGGGTTTTTGTCGCGT
TGCTTCGGCTTTGGGGCGCGCTCTGCCGACGCTGATGCAAACCAGCCGCC
GTCGGTGAAGCAGGCGCCGGACGCTGCTGACGGAAGCGTCAATGGTGATA
CTACCACCGTGGCGGACACGGACCATTCGTTGTCGGATGAGGAATCTCAG
TTACCCGATATGTCCGAGAAGTTACGTCGCATTGGCATCCCCGAACGTGA
TGGTGTGCCACGTCCGCGCGTGAAGCGATATCGATTGATTGCGCCCATTG
CCATTCGTTTCGTGGTGCTGTTGTTGGAACTGGCTGCCATTTACTCCAGT
TCCAATATCACTGACAACGTTCTTGCCGGTCGTTCGTTTAATGTGCGTCT
CGAGCGGGATAACAACTCCGTCAGTGTGGCCGCGGTGCGGAACTCTCAGT
GTCGTGAATTTATCGAAAATGCGCGTGGTGTGGAACAGAATGGTACCGTG
TTGTTGTGCATCGACAGCGAGGAGAATCGAGACTTGTCCACTCGTCGAGA
AAACACCTCCGTGTCGTTCCGTTTTGACCCCACTGAAAATGTTATGGAGT
ATGTGGTGGAGGACAGGTTTGTGATGACCACGCGCGTGTACGCGCGAGTA
CTCATCAACCTGATCAGTGACGATGACGTGCAGTTGGCACCATTGCGTCC
GGACTTGGACGTGGACAGTAATTATTCCAAACGAGTCATCAAGGGAGTGA
TGAACCGCGCGTTGAACAGTTTGGGTTTCAATGTCACATTGTCACAAATC
CGCGAGCGAGTGGATGAGAGCGACGTGATTACCTACGATTACGGACGCTT
CTTTGACGAGGCCAGTCGCGACGAGATTGGTGACGCATTACTGTCCGAGC
TGCAAAGCTTCACGCTCGCACTCAACGTCACGCAGGACGACGAGGAAGAC
GTGCTGTACGCGTTCAAAGCAGGACGCGGCTACTTCCGACACGAGGACCC
GGTGATCGCCGTGGTGGGGCGCAATCGACTGGCACAGGGATGGCTCATCA
TCGCGTGGGTGGCACTGCTCATCGTGCGACTGATTGCGCAGCGTTTCTTC
ACGGTGTTCGACGAACTGGCATACCCCGCCGTGAAGAAGGTGCACGGCGC
AGACCTATCGATAGGACCTTTGGCGCGTGTGCCCAAACACGACACGCTGT
ACATCAGCAAGTTCTCGGACGGGCGCGTGGGACACATCGGATATCGCCCC
GCAAACGAGCGTCAGGACCGCGTGTCCAACTTCCACGGCTGTGAAATCGT
TCTCGGCTCGGGCGAGCAATTGCTACAGCGCCAACGCCAACGTAGCGCGC
GGCCGGCGACGATGGCCGCTTGA

Coding sequence (CDS) from alignment at NODE_1070_length_14265_cov_4.638281:462..2084-

>Gcaud8105.t1 ID=Gcaud8105.t1|Name=Gcaud8105.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1623bp|location=Sequence derived from alignment at NODE_1070_length_14265_cov_4.638281:462..2084- (Gracilaria caudata M_176_S67 male)
ATGGTTGTGCCGTTCCAGCCCACGGGCGTCACCTACTTCAACAGTGTCTT
TGACCGCACCATCTCCAATGTGGTCTTCAGCGGCTTTCTCGCCTTTTTGG
TGCTTCTCGAGTTGGAGAACGTCACCGAGGTGTTCATGTACCGCGCCCAC
AACATCAACAAACGCTCCCTCGATCAATACATCCTCTTCTCACGCGTGTC
CAGCATGAGAGGCATGCTACAAACACTGTCCGGCCTAGAGTACCCTGCGC
GCGAGGTCAGCACGCAACCGCCGCGAACCTCGCGCGGGTTTTTGTCGCGT
TGCTTCGGCTTTGGGGCGCGCTCTGCCGACGCTGATGCAAACCAGCCGCC
GTCGGTGAAGCAGGCGCCGGACGCTGCTGACGGAAGCGTCAATGGTGATA
CTACCACCGTGGCGGACACGGACCATTCGTTGTCGGATGAGGAATCTCAG
TTACCCGATATGTCCGAGAAGTTACGTCGCATTGGCATCCCCGAACGTGA
TGGTGTGCCACGTCCGCGCGTGAAGCGATATCGATTGATTGCGCCCATTG
CCATTCGTTTCGTGGTGCTGTTGTTGGAACTGGCTGCCATTTACTCCAGT
TCCAATATCACTGACAACGTTCTTGCCGGTCGTTCGTTTAATGTGCGTCT
CGAGCGGGATAACAACTCCGTCAGTGTGGCCGCGGTGCGGAACTCTCAGT
GTCGTGAATTTATCGAAAATGCGCGTGGTGTGGAACAGAATGGTACCGTG
TTGTTGTGCATCGACAGCGAGGAGAATCGAGACTTGTCCACTCGTCGAGA
AAACACCTCCGTGTCGTTCCGTTTTGACCCCACTGAAAATGTTATGGAGT
ATGTGGTGGAGGACAGGTTTGTGATGACCACGCGCGTGTACGCGCGAGTA
CTCATCAACCTGATCAGTGACGATGACGTGCAGTTGGCACCATTGCGTCC
GGACTTGGACGTGGACAGTAATTATTCCAAACGAGTCATCAAGGGAGTGA
TGAACCGCGCGTTGAACAGTTTGGGTTTCAATGTCACATTGTCACAAATC
CGCGAGCGAGTGGATGAGAGCGACGTGATTACCTACGATTACGGACGCTT
CTTTGACGAGGCCAGTCGCGACGAGATTGGTGACGCATTACTGTCCGAGC
TGCAAAGCTTCACGCTCGCACTCAACGTCACGCAGGACGACGAGGAAGAC
GTGCTGTACGCGTTCAAAGCAGGACGCGGCTACTTCCGACACGAGGACCC
GGTGATCGCCGTGGTGGGGCGCAATCGACTGGCACAGGGATGGCTCATCA
TCGCGTGGGTGGCACTGCTCATCGTGCGACTGATTGCGCAGCGTTTCTTC
ACGGTGTTCGACGAACTGGCATACCCCGCCGTGAAGAAGGTGCACGGCGC
AGACCTATCGATAGGACCTTTGGCGCGTGTGCCCAAACACGACACGCTGT
ACATCAGCAAGTTCTCGGACGGGCGCGTGGGACACATCGGATATCGCCCC
GCAAACGAGCGTCAGGACCGCGTGTCCAACTTCCACGGCTGTGAAATCGT
TCTCGGCTCGGGCGAGCAATTGCTACAGCGCCAACGCCAACGTAGCGCGC
GGCCGGCGACGATGGCCGCTTGA