Gcaud8085.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8085.t1
Unique Name	Gcaud8085.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6044_length_1308_cov_4.887062	contig	NODE_6044_length_1308_cov_4.887062:354..1175 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005107013.1
PFAMs	Exo_endo_phos_2,RNase_H,RVT_1
Max annot lvl	2759\|Eukaryota
Evalue	3.9e-08
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota
Description	Ribonuclease H protein
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8085	Gcaud8085	Gracilaria caudata M_176_S67 male	gene	NODE_6044_length_1308_cov_4.887062 354..1175 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8085.t1.CDS1	Gcaud8085.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6044_length_1308_cov_4.887062 354..1175 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8085.t1.exon1	Gcaud8085.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6044_length_1308_cov_4.887062 354..1175 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8085.t1.start1	Gcaud8085.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_6044_length_1308_cov_4.887062 1173..1175 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8085.t1	Gcaud8085.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6044_length_1308_cov_4.887062 354..1175 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6044_length_1308_cov_4.887062:354..1175-
coding sequence from alignment at NODE_6044_length_1308_cov_4.887062:354..1175-

mRNA sequence

>Gcaud8085.t1 ID=Gcaud8085.t1|Name=Gcaud8085.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=274bp
LDNTLRVALAEPLARYAAGVVVPNAITCAVEEVERARNEASRIQTGCPKS
SPVISLRELVDQPSLYRVAVYQAAKLYEKAMRIAKTAPTPIAVALQNEAV
PRIRTSRSTVKGAAESRLAEIGLLQLPRAPLPQEPGIHKNGMVYFHNTCC
SKKDPIPVQRAQALKAMQELPSANCEVWTDGSVGIPEWIKTYRPKRVAVE
WDEGYYTGTIQYDEELQKYRDYVETYHRKQGSLPDIVIHYDDNFVMAYSY
TATEKVVKDADGHLLTLKPLQVKE

spliced messenger RNA

>Gcaud8085.t1 ID=Gcaud8085.t1|Name=Gcaud8085.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_6044_length_1308_cov_4.887062:354..1175- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACAATACATTACGAGTAGCCCTAGCGGAACCGCTTGCCCGATATGC
AGCAGGTGTGGTTGTTCCAAACGCCATTACTTGCGCAGTCGAAGAAGTGG
AGAGAGCACGGAATGAAGCCTCACGTATCCAGACAGGGTGCCCGAAATCC
TCCCCTGTTATAAGTCTACGAGAACTGGTAGATCAACCCAGTTTGTATAG
AGTTGCTGTCTATCAAGCAGCCAAGCTGTATGAGAAGGCAATGAGAATTG
CAAAGACAGCACCTACTCCAATTGCAGTTGCTCTACAAAACGAAGCTGTT
CCACGAATTCGAACGTCTCGGTCTACTGTAAAGGGTGCTGCAGAGTCCAG
GCTCGCCGAAATTGGATTACTGCAACTGCCAAGAGCTCCATTGCCTCAAG
AACCTGGGATTCATAAGAATGGAATGGTATACTTTCACAACACATGTTGC
TCAAAGAAAGATCCGATTCCAGTCCAACGAGCGCAGGCTTTGAAAGCAAT
GCAGGAGCTACCCTCTGCAAATTGTGAGGTATGGACGGATGGATCTGTTG
GAATACCGGAATGGATCAAAACGTACCGACCAAAAAGGGTTGCCGTAGAG
TGGGATGAAGGGTATTATACAGGAACCATCCAGTACGATGAAGAACTTCA
GAAGTATCGAGACTATGTAGAGACATATCACAGAAAGCAGGGATCGCTAC
CAGACATAGTTATTCATTATGATGATAACTTCGTGATGGCGTATAGTTAT
ACCGCCACAGAAAAGGTCGTCAAAGATGCGGATGGGCACCTCTTAACGCT
GAAACCGCTCCAGGTTAAAGAA

protein sequence of Gcaud8085.t1

>Gcaud8085.t1 ID=Gcaud8085.t1|Name=Gcaud8085.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=274bp
LDNTLRVALAEPLARYAAGVVVPNAITCAVEEVERARNEASRIQTGCPKS
SPVISLRELVDQPSLYRVAVYQAAKLYEKAMRIAKTAPTPIAVALQNEAV
PRIRTSRSTVKGAAESRLAEIGLLQLPRAPLPQEPGIHKNGMVYFHNTCC
SKKDPIPVQRAQALKAMQELPSANCEVWTDGSVGIPEWIKTYRPKRVAVE
WDEGYYTGTIQYDEELQKYRDYVETYHRKQGSLPDIVIHYDDNFVMAYSY
TATEKVVKDADGHLLTLKPLQVKE

mRNA from alignment at NODE_6044_length_1308_cov_4.887062:354..1175-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8085.t1 ID=Gcaud8085.t1|Name=Gcaud8085.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_6044_length_1308_cov_4.887062:354..1175- (Gracilaria caudata M_176_S67 male)
CTGGACAATACATTACGAGTAGCCCTAGCGGAACCGCTTGCCCGATATGC
AGCAGGTGTGGTTGTTCCAAACGCCATTACTTGCGCAGTCGAAGAAGTGG
AGAGAGCACGGAATGAAGCCTCACGTATCCAGACAGGGTGCCCGAAATCC
TCCCCTGTTATAAGTCTACGAGAACTGGTAGATCAACCCAGTTTGTATAG
AGTTGCTGTCTATCAAGCAGCCAAGCTGTATGAGAAGGCAATGAGAATTG
CAAAGACAGCACCTACTCCAATTGCAGTTGCTCTACAAAACGAAGCTGTT
CCACGAATTCGAACGTCTCGGTCTACTGTAAAGGGTGCTGCAGAGTCCAG
GCTCGCCGAAATTGGATTACTGCAACTGCCAAGAGCTCCATTGCCTCAAG
AACCTGGGATTCATAAGAATGGAATGGTATACTTTCACAACACATGTTGC
TCAAAGAAAGATCCGATTCCAGTCCAACGAGCGCAGGCTTTGAAAGCAAT
GCAGGAGCTACCCTCTGCAAATTGTGAGGTATGGACGGATGGATCTGTTG
GAATACCGGAATGGATCAAAACGTACCGACCAAAAAGGGTTGCCGTAGAG
TGGGATGAAGGGTATTATACAGGAACCATCCAGTACGATGAAGAACTTCA
GAAGTATCGAGACTATGTAGAGACATATCACAGAAAGCAGGGATCGCTAC
CAGACATAGTTATTCATTATGATGATAACTTCGTGATGGCGTATAGTTAT
ACCGCCACAGAAAAGGTCGTCAAAGATGCGGATGGGCACCTCTTAACGCT
GAAACCGCTCCAGGTTAAAGAA

Coding sequence (CDS) from alignment at NODE_6044_length_1308_cov_4.887062:354..1175-

>Gcaud8085.t1 ID=Gcaud8085.t1|Name=Gcaud8085.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=822bp|location=Sequence derived from alignment at NODE_6044_length_1308_cov_4.887062:354..1175- (Gracilaria caudata M_176_S67 male)
CTGGACAATACATTACGAGTAGCCCTAGCGGAACCGCTTGCCCGATATGC
AGCAGGTGTGGTTGTTCCAAACGCCATTACTTGCGCAGTCGAAGAAGTGG
AGAGAGCACGGAATGAAGCCTCACGTATCCAGACAGGGTGCCCGAAATCC
TCCCCTGTTATAAGTCTACGAGAACTGGTAGATCAACCCAGTTTGTATAG
AGTTGCTGTCTATCAAGCAGCCAAGCTGTATGAGAAGGCAATGAGAATTG
CAAAGACAGCACCTACTCCAATTGCAGTTGCTCTACAAAACGAAGCTGTT
CCACGAATTCGAACGTCTCGGTCTACTGTAAAGGGTGCTGCAGAGTCCAG
GCTCGCCGAAATTGGATTACTGCAACTGCCAAGAGCTCCATTGCCTCAAG
AACCTGGGATTCATAAGAATGGAATGGTATACTTTCACAACACATGTTGC
TCAAAGAAAGATCCGATTCCAGTCCAACGAGCGCAGGCTTTGAAAGCAAT
GCAGGAGCTACCCTCTGCAAATTGTGAGGTATGGACGGATGGATCTGTTG
GAATACCGGAATGGATCAAAACGTACCGACCAAAAAGGGTTGCCGTAGAG
TGGGATGAAGGGTATTATACAGGAACCATCCAGTACGATGAAGAACTTCA
GAAGTATCGAGACTATGTAGAGACATATCACAGAAAGCAGGGATCGCTAC
CAGACATAGTTATTCATTATGATGATAACTTCGTGATGGCGTATAGTTAT
ACCGCCACAGAAAAGGTCGTCAAAGATGCGGATGGGCACCTCTTAACGCT
GAAACCGCTCCAGGTTAAAGAA