Gcaud8045.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8045.t1
Unique NameGcaud8045.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1800_length_8346_cov_3.892065contigNODE_1800_length_8346_cov_3.892065:5332..5886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8045Gcaud8045Gracilaria caudata M_176_S67 malegeneNODE_1800_length_8346_cov_3.892065 5332..5886 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8045.t1.stop1Gcaud8045.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1800_length_8346_cov_3.892065 5332..5334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8045.t1.CDS1Gcaud8045.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1800_length_8346_cov_3.892065 5332..5886 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8045.t1.exon1Gcaud8045.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1800_length_8346_cov_3.892065 5332..5886 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8045.t1.start1Gcaud8045.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1800_length_8346_cov_3.892065 5884..5886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8045.t1Gcaud8045.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1800_length_8346_cov_3.892065 5332..5886 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8045.t1 ID=Gcaud8045.t1|Name=Gcaud8045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=185bp
MSPPPKEAPRSPLEHATEYNVNVRSLSRYNISHVSNPKPVFKVKERCLHN
HNDAPFYHMTITNFHDLRYPARIVHTMSGRTLFVLRRKEYGSDTIFTWKS
NKEEGEPYLRAERNMSLWLYSKKTQFTVKEHANDKLVAEAHPASQERESF
VLRVEAGYSAPLMVFFGVSFHSLFTDLVAQGFTS*
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spliced messenger RNA

>Gcaud8045.t1 ID=Gcaud8045.t1|Name=Gcaud8045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_1800_length_8346_cov_3.892065:5332..5886- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGCCGCCCAAGGAAGCGCCACGCTCCCCCCTGGAGCATGCCAC
CGAGTACAATGTCAACGTCCGCAGTCTGTCAAGGTACAATATCAGCCATG
TGTCCAACCCTAAGCCCGTCTTCAAGGTCAAGGAACGGTGTCTGCACAAT
CATAACGATGCCCCTTTCTACCACATGACTATCACCAATTTCCATGATCT
TCGCTACCCTGCACGAATCGTTCATACGATGAGCGGTCGCACTCTGTTCG
TGCTGCGCAGAAAGGAATATGGTAGCGACACCATCTTCACATGGAAGAGC
AACAAGGAGGAGGGAGAGCCTTACTTGAGAGCGGAGAGGAATATGTCACT
ATGGCTATATTCGAAAAAGACACAATTCACCGTCAAGGAGCACGCCAACG
ATAAGCTTGTTGCCGAGGCGCATCCTGCTTCGCAGGAGAGGGAGAGTTTT
GTGCTTCGCGTGGAGGCTGGCTATAGTGCCCCCTTGATGGTATTCTTTGG
AGTTTCTTTTCATTCCCTCTTTACCGACTTGGTCGCTCAAGGTTTCACTT
CGTAG
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protein sequence of Gcaud8045.t1

>Gcaud8045.t1 ID=Gcaud8045.t1|Name=Gcaud8045.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MSPPPKEAPRSPLEHATEYNVNVRSLSRYNISHVSNPKPVFKVKERCLHN
HNDAPFYHMTITNFHDLRYPARIVHTMSGRTLFVLRRKEYGSDTIFTWKS
NKEEGEPYLRAERNMSLWLYSKKTQFTVKEHANDKLVAEAHPASQERESF
VLRVEAGYSAPLMVFFGVSFHSLFTDLVAQGFTS*
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mRNA from alignment at NODE_1800_length_8346_cov_3.892065:5332..5886-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8045.t1 ID=Gcaud8045.t1|Name=Gcaud8045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_1800_length_8346_cov_3.892065:5332..5886- (Gracilaria caudata M_176_S67 male)
ATGTCGCCGCCGCCCAAGGAAGCGCCACGCTCCCCCCTGGAGCATGCCAC
CGAGTACAATGTCAACGTCCGCAGTCTGTCAAGGTACAATATCAGCCATG
TGTCCAACCCTAAGCCCGTCTTCAAGGTCAAGGAACGGTGTCTGCACAAT
CATAACGATGCCCCTTTCTACCACATGACTATCACCAATTTCCATGATCT
TCGCTACCCTGCACGAATCGTTCATACGATGAGCGGTCGCACTCTGTTCG
TGCTGCGCAGAAAGGAATATGGTAGCGACACCATCTTCACATGGAAGAGC
AACAAGGAGGAGGGAGAGCCTTACTTGAGAGCGGAGAGGAATATGTCACT
ATGGCTATATTCGAAAAAGACACAATTCACCGTCAAGGAGCACGCCAACG
ATAAGCTTGTTGCCGAGGCGCATCCTGCTTCGCAGGAGAGGGAGAGTTTT
GTGCTTCGCGTGGAGGCTGGCTATAGTGCCCCCTTGATGGTATTCTTTGG
AGTTTCTTTTCATTCCCTCTTTACCGACTTGGTCGCTCAAGGTTTCACTT
CGTAG
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Coding sequence (CDS) from alignment at NODE_1800_length_8346_cov_3.892065:5332..5886-

>Gcaud8045.t1 ID=Gcaud8045.t1|Name=Gcaud8045.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=555bp|location=Sequence derived from alignment at NODE_1800_length_8346_cov_3.892065:5332..5886- (Gracilaria caudata M_176_S67 male)
ATGTCGCCGCCGCCCAAGGAAGCGCCACGCTCCCCCCTGGAGCATGCCAC
CGAGTACAATGTCAACGTCCGCAGTCTGTCAAGGTACAATATCAGCCATG
TGTCCAACCCTAAGCCCGTCTTCAAGGTCAAGGAACGGTGTCTGCACAAT
CATAACGATGCCCCTTTCTACCACATGACTATCACCAATTTCCATGATCT
TCGCTACCCTGCACGAATCGTTCATACGATGAGCGGTCGCACTCTGTTCG
TGCTGCGCAGAAAGGAATATGGTAGCGACACCATCTTCACATGGAAGAGC
AACAAGGAGGAGGGAGAGCCTTACTTGAGAGCGGAGAGGAATATGTCACT
ATGGCTATATTCGAAAAAGACACAATTCACCGTCAAGGAGCACGCCAACG
ATAAGCTTGTTGCCGAGGCGCATCCTGCTTCGCAGGAGAGGGAGAGTTTT
GTGCTTCGCGTGGAGGCTGGCTATAGTGCCCCCTTGATGGTATTCTTTGG
AGTTTCTTTTCATTCCCTCTTTACCGACTTGGTCGCTCAAGGTTTCACTT
CGTAG
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