Gcaud8019.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8019.t1
Unique NameGcaud8019.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_47_length_66049_cov_4.331180contigNODE_47_length_66049_cov_4.331180:14267..15298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML077CT
Preferred nameGTF2B
PFAMsTFIIB,TF_Zn_Ribbon
Max annot lvl2759|Eukaryota
KEGG koko:K03124
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
GOsGO:0000003,GO:0000428,GO:0000769,GO:0000976,GO:0000977,GO:0000979,GO:0000988,GO:0000989,GO:0000990,GO:0000991,GO:0000993,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001076,GO:0001098,GO:0001099,GO:0001112,GO:0001113,GO:0001120,GO:0001129,GO:0001132,GO:0001139,GO:0001173,GO:0001174,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006725,GO:0006807,GO:0006935,GO:0006949,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009301,GO:0009605,GO:0009653,GO:0009791,GO:0009856,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009960,GO:0009987,GO:0010035,GO:0010038,GO:0010154,GO:0010183,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010769,GO:0016043,GO:0016070,GO:0016073,GO:0016407,GO:0016591,GO:0016604,GO:0016740,GO:0016746,GO:0016747,GO:0017025,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035257,GO:0035821,GO:0036211,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0042795,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043388,GO:0043412,GO:0043543,GO:0043565,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044706,GO:0044798,GO:0044877,GO:0045595,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046686,GO:0046782,GO:0046872,GO:0046914,GO:0046966,GO:0048316,GO:0048518,GO:0048522,GO:0048524,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048856,GO:0048868,GO:0050434,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051098,GO:0051099,GO:0051101,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051427,GO:0051510,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080092,GO:0090304,GO:0090575,GO:0097159,GO:0097550,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904796,GO:1904798,GO:1990114,GO:1990234,GO:1990837,GO:1990841,GO:2000112,GO:2000142,GO:2000144,GO:2000241,GO:2000677,GO:2000679,GO:2001141
Evalue5.43e-63
EggNOG OGsCOG1405@1|root,KOG1597@2759|Eukaryota
DescriptionTBP-class protein binding
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8019Gcaud8019Gracilaria caudata M_176_S67 malegeneNODE_47_length_66049_cov_4.331180 14267..15298 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8019.t1.start1Gcaud8019.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_47_length_66049_cov_4.331180 14267..14269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8019.t1.CDS1Gcaud8019.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_47_length_66049_cov_4.331180 14267..15298 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8019.t1.exon1Gcaud8019.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_47_length_66049_cov_4.331180 14267..15298 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8019.t1.stop1Gcaud8019.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_47_length_66049_cov_4.331180 15296..15298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8019.t1Gcaud8019.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_47_length_66049_cov_4.331180 14267..15298 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8019.t1 ID=Gcaud8019.t1|Name=Gcaud8019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MSSVNGMPSLAPPMEREMPEECPECGSDDIVENWREGTADCRGCGLILIE
RLLDLGTEWRTFTSEEGDDPNRAGPANNPLLEFEHGTSIGTGAKGGGALS
VSLNRAQNRNATSAADKVMMEVIQRIGRYRERLNLAKSVSDRALELFKRY
QDQLTTKVVSTPGEPDKRVRTRTLREEEVNEIVASSLFIACRNQKVARSY
KEICSLTGVPKKNVGATVKKMERQLTDAKTTYVRGTDDFVTRFGNFLDLP
RDVINAADAVANEMQNHEVLHGKTYTTLAAASIYIVTLLCKEEHRRSAKE
IADVTGVAEVTIKSTYRLFYPYIEGVVPEDFECAVSVSDLPQP*
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spliced messenger RNA

>Gcaud8019.t1 ID=Gcaud8019.t1|Name=Gcaud8019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:14267..15298+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCAGTGAACGGTATGCCCAGCTTGGCTCCGCCGATGGAGCGGGA
AATGCCTGAAGAATGTCCCGAATGCGGCTCGGATGATATTGTCGAGAACT
GGAGAGAAGGCACGGCGGATTGCAGGGGCTGTGGCCTCATTCTTATTGAG
AGACTACTAGACCTTGGCACTGAATGGCGAACATTCACCTCCGAAGAAGG
AGACGACCCGAATCGTGCAGGTCCGGCAAACAACCCACTGCTCGAATTTG
AGCATGGCACGAGCATCGGAACCGGTGCCAAAGGCGGTGGAGCGCTTAGC
GTGTCGCTCAACCGTGCGCAGAACAGGAATGCGACATCCGCTGCTGATAA
GGTGATGATGGAAGTAATTCAACGGATCGGCAGATACCGTGAACGTTTGA
ATCTGGCTAAGTCGGTGAGCGACCGCGCGTTAGAGCTCTTCAAGAGATAT
CAAGACCAATTGACTACCAAGGTAGTATCTACTCCAGGAGAACCCGACAA
GCGTGTGAGAACGAGAACACTTCGCGAAGAGGAAGTGAACGAAATCGTTG
CATCAAGTCTGTTCATCGCGTGCAGGAATCAGAAGGTGGCACGCTCCTAC
AAGGAAATCTGTTCGTTGACTGGCGTGCCCAAAAAGAACGTGGGCGCCAC
TGTGAAGAAGATGGAGCGACAGCTGACGGACGCTAAGACGACTTACGTTC
GCGGTACCGATGACTTCGTGACGCGCTTCGGCAACTTCCTGGACCTGCCT
CGCGATGTGATCAACGCGGCGGATGCAGTAGCTAATGAAATGCAGAATCA
TGAGGTGCTGCATGGTAAGACATACACGACTCTGGCAGCAGCAAGCATCT
ACATTGTCACGCTTCTGTGCAAAGAGGAGCATAGAAGAAGTGCGAAGGAA
ATTGCGGACGTGACCGGCGTTGCTGAGGTGACTATCAAGTCAACGTACCG
GCTTTTCTACCCGTACATTGAGGGAGTCGTGCCTGAGGACTTCGAGTGCG
CGGTGAGCGTGTCAGACCTACCGCAGCCGTAG
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protein sequence of Gcaud8019.t1

>Gcaud8019.t1 ID=Gcaud8019.t1|Name=Gcaud8019.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MSSVNGMPSLAPPMEREMPEECPECGSDDIVENWREGTADCRGCGLILIE
RLLDLGTEWRTFTSEEGDDPNRAGPANNPLLEFEHGTSIGTGAKGGGALS
VSLNRAQNRNATSAADKVMMEVIQRIGRYRERLNLAKSVSDRALELFKRY
QDQLTTKVVSTPGEPDKRVRTRTLREEEVNEIVASSLFIACRNQKVARSY
KEICSLTGVPKKNVGATVKKMERQLTDAKTTYVRGTDDFVTRFGNFLDLP
RDVINAADAVANEMQNHEVLHGKTYTTLAAASIYIVTLLCKEEHRRSAKE
IADVTGVAEVTIKSTYRLFYPYIEGVVPEDFECAVSVSDLPQP*
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mRNA from alignment at NODE_47_length_66049_cov_4.331180:14267..15298+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8019.t1 ID=Gcaud8019.t1|Name=Gcaud8019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:14267..15298+ (Gracilaria caudata M_176_S67 male)
ATGAGTTCAGTGAACGGTATGCCCAGCTTGGCTCCGCCGATGGAGCGGGA
AATGCCTGAAGAATGTCCCGAATGCGGCTCGGATGATATTGTCGAGAACT
GGAGAGAAGGCACGGCGGATTGCAGGGGCTGTGGCCTCATTCTTATTGAG
AGACTACTAGACCTTGGCACTGAATGGCGAACATTCACCTCCGAAGAAGG
AGACGACCCGAATCGTGCAGGTCCGGCAAACAACCCACTGCTCGAATTTG
AGCATGGCACGAGCATCGGAACCGGTGCCAAAGGCGGTGGAGCGCTTAGC
GTGTCGCTCAACCGTGCGCAGAACAGGAATGCGACATCCGCTGCTGATAA
GGTGATGATGGAAGTAATTCAACGGATCGGCAGATACCGTGAACGTTTGA
ATCTGGCTAAGTCGGTGAGCGACCGCGCGTTAGAGCTCTTCAAGAGATAT
CAAGACCAATTGACTACCAAGGTAGTATCTACTCCAGGAGAACCCGACAA
GCGTGTGAGAACGAGAACACTTCGCGAAGAGGAAGTGAACGAAATCGTTG
CATCAAGTCTGTTCATCGCGTGCAGGAATCAGAAGGTGGCACGCTCCTAC
AAGGAAATCTGTTCGTTGACTGGCGTGCCCAAAAAGAACGTGGGCGCCAC
TGTGAAGAAGATGGAGCGACAGCTGACGGACGCTAAGACGACTTACGTTC
GCGGTACCGATGACTTCGTGACGCGCTTCGGCAACTTCCTGGACCTGCCT
CGCGATGTGATCAACGCGGCGGATGCAGTAGCTAATGAAATGCAGAATCA
TGAGGTGCTGCATGGTAAGACATACACGACTCTGGCAGCAGCAAGCATCT
ACATTGTCACGCTTCTGTGCAAAGAGGAGCATAGAAGAAGTGCGAAGGAA
ATTGCGGACGTGACCGGCGTTGCTGAGGTGACTATCAAGTCAACGTACCG
GCTTTTCTACCCGTACATTGAGGGAGTCGTGCCTGAGGACTTCGAGTGCG
CGGTGAGCGTGTCAGACCTACCGCAGCCGTAG
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Coding sequence (CDS) from alignment at NODE_47_length_66049_cov_4.331180:14267..15298+

>Gcaud8019.t1 ID=Gcaud8019.t1|Name=Gcaud8019.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:14267..15298+ (Gracilaria caudata M_176_S67 male)
ATGAGTTCAGTGAACGGTATGCCCAGCTTGGCTCCGCCGATGGAGCGGGA
AATGCCTGAAGAATGTCCCGAATGCGGCTCGGATGATATTGTCGAGAACT
GGAGAGAAGGCACGGCGGATTGCAGGGGCTGTGGCCTCATTCTTATTGAG
AGACTACTAGACCTTGGCACTGAATGGCGAACATTCACCTCCGAAGAAGG
AGACGACCCGAATCGTGCAGGTCCGGCAAACAACCCACTGCTCGAATTTG
AGCATGGCACGAGCATCGGAACCGGTGCCAAAGGCGGTGGAGCGCTTAGC
GTGTCGCTCAACCGTGCGCAGAACAGGAATGCGACATCCGCTGCTGATAA
GGTGATGATGGAAGTAATTCAACGGATCGGCAGATACCGTGAACGTTTGA
ATCTGGCTAAGTCGGTGAGCGACCGCGCGTTAGAGCTCTTCAAGAGATAT
CAAGACCAATTGACTACCAAGGTAGTATCTACTCCAGGAGAACCCGACAA
GCGTGTGAGAACGAGAACACTTCGCGAAGAGGAAGTGAACGAAATCGTTG
CATCAAGTCTGTTCATCGCGTGCAGGAATCAGAAGGTGGCACGCTCCTAC
AAGGAAATCTGTTCGTTGACTGGCGTGCCCAAAAAGAACGTGGGCGCCAC
TGTGAAGAAGATGGAGCGACAGCTGACGGACGCTAAGACGACTTACGTTC
GCGGTACCGATGACTTCGTGACGCGCTTCGGCAACTTCCTGGACCTGCCT
CGCGATGTGATCAACGCGGCGGATGCAGTAGCTAATGAAATGCAGAATCA
TGAGGTGCTGCATGGTAAGACATACACGACTCTGGCAGCAGCAAGCATCT
ACATTGTCACGCTTCTGTGCAAAGAGGAGCATAGAAGAAGTGCGAAGGAA
ATTGCGGACGTGACCGGCGTTGCTGAGGTGACTATCAAGTCAACGTACCG
GCTTTTCTACCCGTACATTGAGGGAGTCGTGCCTGAGGACTTCGAGTGCG
CGGTGAGCGTGTCAGACCTACCGCAGCCGTAG
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