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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7992.t2.start1 | Gcaud7992.t2.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_675_length_19862_cov_4.263113 3867..3869 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7992.t2.stop1 | Gcaud7992.t2.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_675_length_19862_cov_4.263113 5430..5432 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud7992.t2 ID=Gcaud7992.t2|Name=Gcaud7992.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp
MPSWYSDDELSLLRYTPMSPDFRTSNGAYVLPFDIPSESPRYQPSPAGSG
RRRPSRSIPKPTITFANYEAKNRAPQFVVPTPSPDEPIPVQWLSSPDAFE
LLCNDSRLSRATKYDRTVACFNLYPATKSDLQINHLIWTVAQKGEYNPMH
GNLLLQNNVLSLAMPHEFYDFLHQITEEELKQSMLEVLALIAEDEDAEGL
SLMQSELEPSIWEDLVEYMDGCDPQSHCRMDSKTKDGRRLMISVESLLRF
CYLSPWKIDIYASYITPQEFNNALQALMVQKTMSSSEREQDSPRHSFDRR
LVRSNARRPVASLSQTSRLLVSSNGNCSDRNRVFWKLFQDWRRHREVLVQ
FLGISPALAVQTMVDSISYGTQEDAWKRMETVMACWHVKVAANRVEVGLR
GRSESVIFQFSQKLCFLNEGQS* back to topspliced messenger RNA >Gcaud7992.t2 ID=Gcaud7992.t2|Name=Gcaud7992.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_675_length_19862_cov_4.263113:3867..5432+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCTCTTGGTACTCTGATGATGAACTTAGCTTGCTGCGATATACTCC
AATGTCGCCTGATTTTCGAACTAGCAATGGAGCATACGTGCTTCCATTTG
ACATTCCATCCGAATCGCCGCGATATCAACCATCCCCCGCAGGCTCCGGC
AGAAGGCGTCCGTCTCGTTCCATTCCAAAGCCTACCATAACGTTTGCCAA
CTATGAAGCGAAGAATCGCGCGCCGCAGTTTGTCGTCCCCACTCCGTCGC
CAGACGAACCAATACCAGTGCAATGGCTCAGCTCCCCCGATGCATTCGAG
CTTCTGTGCAATGACAGTCGTTTGTCACGCGCCACCAAGTATGATAGAAC
CGTCGCGTGCTTCAATCTGtaccctgccacgaagagcgatctgcaaatca
atcacttgatctggaccgttgcgcagaaaggagaatacaacccgatgcac
ggaaatctttTGTTGCAGAACAACGTGCTTTCATTGGCTATGCCACACGA
GTTTTATGACTTTCTTCATCAAATAACTGAGGAAGAACTCAAGCAAAGCA
TGTTAGAGGTGCTCGCTTTAATTGCTGAAGATGAGGATGCAGAGGGGTTG
TCATTGATGCAGTCCGAGTTAGAGCCTTCAATATGGGAAGATCTTGTTGA
GTATATGGATGGGTGCGACCCCCAAAGTCACTGCAGAATGGACTCTAAAA
CAAAGGATGGTCGCAGGCTCATGATATCCGTCGAGTCTCTATTACGCTTT
TGCTATCTGTCACCGTGGAAAATTGACATATATGCATCGTACATCACTCC
CCAAGAATTTAACAACGCCTTGCAAGCTTTGATGGTGCAAAAGACAATGT
CCTCCTCTGAAAGAGAACAGGATTCGCCACGACACTCGTTCGACCGACGT
CTTGTTCGTTCAAACGCACGAAGACCTGTCGCATCGTTATCTCAAACGTC
GCGTCTGCTCGTCTCGTCAAATGGAAATTGTTCCGACAGAAACCGCGTGT
TTTGGAAATTGTTTCAAGACTGGCGACGACACCGCGAAGTGTTGGTCCAG
TTTCTCGGCATCTCACCTGCCCTGGCTGTCCAAACTATGGTTGATTCCAT
TTCATATGGAACACAAGAAGATGCTTGGAAACGAATGGAAACTGTTATGG
CTTGCTGGCATGTGAAGGTTGCAGCCAACAGAGTTGAGGTTGGATTGCGA
GGTCGATCAGAGAGCGTAATATTCCAGTTCAGTCAGAAACTATGTTTTCT
GAATGAAGGTCAGTCCTAA back to topprotein sequence of Gcaud7992.t2 >Gcaud7992.t2 ID=Gcaud7992.t2|Name=Gcaud7992.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MPSWYSDDELSLLRYTPMSPDFRTSNGAYVLPFDIPSESPRYQPSPAGSG
RRRPSRSIPKPTITFANYEAKNRAPQFVVPTPSPDEPIPVQWLSSPDAFE
LLCNDSRLSRATKYDRTVACFNLYPATKSDLQINHLIWTVAQKGEYNPMH
GNLLLQNNVLSLAMPHEFYDFLHQITEEELKQSMLEVLALIAEDEDAEGL
SLMQSELEPSIWEDLVEYMDGCDPQSHCRMDSKTKDGRRLMISVESLLRF
CYLSPWKIDIYASYITPQEFNNALQALMVQKTMSSSEREQDSPRHSFDRR
LVRSNARRPVASLSQTSRLLVSSNGNCSDRNRVFWKLFQDWRRHREVLVQ
FLGISPALAVQTMVDSISYGTQEDAWKRMETVMACWHVKVAANRVEVGLR
GRSESVIFQFSQKLCFLNEGQS* back to topmRNA from alignment at NODE_675_length_19862_cov_4.263113:3867..5432+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud7992.t2 ID=Gcaud7992.t2|Name=Gcaud7992.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at NODE_675_length_19862_cov_4.263113:3867..5432+ (Gracilaria caudata M_176_S67 male)
ATGCCCTCTTGGTACTCTGATGATGAACTTAGCTTGCTGCGATATACTCC
AATGTCGCCTGATTTTCGAACTAGCAATGGAGCATACGTGCTTCCATTTG
ACATTCCATCCGAATCGCCGCGATATCAACCATCCCCCGCAGGCTCCGGC
AGAAGGCGTCCGTCTCGTTCCATTCCAAAGCCTACCATAACGTTTGCCAA
CTATGAAGCGAAGAATCGCGCGCCGCAGTTTGTCGTCCCCACTCCGTCGC
CAGACGAACCAATACCAGTGCAATGGCTCAGCTCCCCCGATGCATTCGAG
CTTCTGTGCAATGACAGTCGTTTGTCACGCGCCACCAAGTATGATAGAAC
CGTCGCGTGCTTCAATCTGtaccctgccacgaagagcgatctgcaaatca
atcacttgatctggaccgttgcgcagaaaggagaatacaacccgatgcac
ggaaatctttTGTTGCAGAACAACGTGCTTTCATTGGCTATGCCACACGA
GTTTTATGACTTTCTTCATCAAATAACTGAGGAAGAACTCAAGCAAAGCA
TGTTAGAGGTGCTCGCTTTAATTGCTGAAGATGAGGATGCAGAGGGGTTG
TCATTGATGCAGTCCGAGTTAGAGCCTTCAATATGGGAAGATCTTGTTGA
GTATATGGATGGGTGCGACCCCCAAAGTCACTGCAGAATGGACTCTAAAA
CAAAGGATGGTCGCAGGCTCATGATATCCGTCGAGTCTCTATTACGCTTT
TGCTATCTGTCACCGTGGAAAATTGACATATATGCATCGTACATCACTCC
CCAAGAATTTAACAACGCCTTGCAAGCTTTGATGGTGCAAAAGACAATGT
CCTCCTCTGAAAGAGAACAGGATTCGCCACGACACTCGTTCGACCGACGT
CTTGTTCGTTCAAACGCACGAAGACCTGTCGCATCGTTATCTCAAACGTC
GCGTCTGCTCGTCTCGTCAAATGGAAATTGTTCCGACAGAAACCGCGTGT
TTTGGAAATTGTTTCAAGACTGGCGACGACACCGCGAAGTGTTGGTCCAG
TTTCTCGGCATCTCACCTGCCCTGGCTGTCCAAACTATGGTTGATTCCAT
TTCATATGGAACACAAGAAGATGCTTGGAAACGAATGGAAACTGTTATGG
CTTGCTGGCATGTGAAGGGTAACCTACTTTCAACGCTTCCAAAGGAAGTT
GTTTTCAACACTCTCGCTCCTTATGTGTTATACACCAGTTGCAGCCAACA
GAGTTGAGGTTGGATTGCGAGGTCGATCAGAGAGCGTGTACGTATCTCAA
AGGTGACAGTGAAGGAACAAGACTAACACGCTTCAAATGGTTTTGGAGTT
TGTCGTGCTCTAATAGGTAGTTCTCGGTTGATCCCATCTCAATTCAAAAG
CTGACATGATCTTGAGCGTTTAACTTTTTTTTTCTTAAGAGAGCTTAGAA
TATTCCAGTTCAGGTAAGAACAAGCACACCTCGATACAACGCCGTCTATT
AGTTAACCTTCTTGGCTCAATTCAAACAGTCAGAAACTATGTTTTCTGAA
TGAAGGTCAGTCCTAA back to topCoding sequence (CDS) from alignment at NODE_675_length_19862_cov_4.263113:3867..5432+ >Gcaud7992.t2 ID=Gcaud7992.t2|Name=Gcaud7992.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1269bp|location=Sequence derived from alignment at NODE_675_length_19862_cov_4.263113:3867..5432+ (Gracilaria caudata M_176_S67 male)
ATGCCCTCTTGGTACTCTGATGATGAACTTAGCTTGCTGCGATATACTCC
AATGTCGCCTGATTTTCGAACTAGCAATGGAGCATACGTGCTTCCATTTG
ACATTCCATCCGAATCGCCGCGATATCAACCATCCCCCGCAGGCTCCGGC
AGAAGGCGTCCGTCTCGTTCCATTCCAAAGCCTACCATAACGTTTGCCAA
CTATGAAGCGAAGAATCGCGCGCCGCAGTTTGTCGTCCCCACTCCGTCGC
CAGACGAACCAATACCAGTGCAATGGCTCAGCTCCCCCGATGCATTCGAG
CTTCTGTGCAATGACAGTCGTTTGTCACGCGCCACCAAGTATGATAGAAC
CGTCGCGTGCTTCAATCTGtaccctgccacgaagagcgatctgcaaatca
atcacttgatctggaccgttgcgcagaaaggagaatacaacccgatgcac
ggaaatctttTGTTGCAGAACAACGTGCTTTCATTGGCTATGCCACACGA
GTTTTATGACTTTCTTCATCAAATAACTGAGGAAGAACTCAAGCAAAGCA
TGTTAGAGGTGCTCGCTTTAATTGCTGAAGATGAGGATGCAGAGGGGTTG
TCATTGATGCAGTCCGAGTTAGAGCCTTCAATATGGGAAGATCTTGTTGA
GTATATGGATGGGTGCGACCCCCAAAGTCACTGCAGAATGGACTCTAAAA
CAAAGGATGGTCGCAGGCTCATGATATCCGTCGAGTCTCTATTACGCTTT
TGCTATCTGTCACCGTGGAAAATTGACATATATGCATCGTACATCACTCC
CCAAGAATTTAACAACGCCTTGCAAGCTTTGATGGTGCAAAAGACAATGT
CCTCCTCTGAAAGAGAACAGGATTCGCCACGACACTCGTTCGACCGACGT
CTTGTTCGTTCAAACGCACGAAGACCTGTCGCATCGTTATCTCAAACGTC
GCGTCTGCTCGTCTCGTCAAATGGAAATTGTTCCGACAGAAACCGCGTGT
TTTGGAAATTGTTTCAAGACTGGCGACGACACCGCGAAGTGTTGGTCCAG
TTTCTCGGCATCTCACCTGCCCTGGCTGTCCAAACTATGGTTGATTCCAT
TTCATATGGAACACAAGAAGATGCTTGGAAACGAATGGAAACTGTTATGG
CTTGCTGGCATGTGAAGGTTGCAGCCAACAGAGTTGAGGTTGGATTGCGA
GGTCGATCAGAGAGCGTAATATTCCAGTTCAGTCAGAAACTATGTTTTCT
GAATGAAGGTCAGTCCTAA back to top
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