Gcaud7892.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7892.t1
Unique Name	Gcaud7892.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1851_length_8084_cov_4.360315	contig	NODE_1851_length_8084_cov_4.360315:5330..6754 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7892	Gcaud7892	Gracilaria caudata M_176_S67 male	gene	NODE_1851_length_8084_cov_4.360315 5330..6754 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7892.t1.start1	Gcaud7892.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1851_length_8084_cov_4.360315 5330..5332 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7892.t1.CDS1	Gcaud7892.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1851_length_8084_cov_4.360315 5330..6754 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7892.t1.exon1	Gcaud7892.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1851_length_8084_cov_4.360315 5330..6754 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7892.t1.stop1	Gcaud7892.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1851_length_8084_cov_4.360315 6752..6754 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7892.t1	Gcaud7892.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1851_length_8084_cov_4.360315 5330..6754 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1851_length_8084_cov_4.360315:5330..6754+
coding sequence from alignment at NODE_1851_length_8084_cov_4.360315:5330..6754+

mRNA sequence

>Gcaud7892.t1 ID=Gcaud7892.t1|Name=Gcaud7892.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MKEVTSDPIIRPNLLLTPKNDPCYACGQNSKKRPTVLVHLTTAQLEKRAN
VDTSPLLNPFASGCPEHVKLCTDCRCSTKGWSVICNPRKYGAKSQAALVS
WKRRYTPASVRKSSECYICARLAKCGREDLVPSYIPGKSPRSNLPLLELL
FYDDHARAHFCSELSQRSKISEQDARDLLKELAESRFCSLHHNHTRHSKD
SAARIEPSRRGVKRGYCVFRGHGCPDTSQIFRPILRPSLDSLEELEEFGE
LEEAIESHSGFALIAAETMGKQACGSCRYIISKGRTGTVPTVDTASLGCA
TDRCLVDCIFYALDNDVDKSPQSTYMRGNEAVFDKARSLRDAVVTPFSGA
PNARFLPVSKVQKLRRLLHAMSISGTKHICDRTVESRIGPVLAARRVHLY
ALSRKCRCYALQDSLSDTLNNFMSICGDNEDYLSPRDRRKMLTDVCQRFF
KQAENYRHGRWRLWDEITAIPAKL*

spliced messenger RNA

>Gcaud7892.t1 ID=Gcaud7892.t1|Name=Gcaud7892.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_1851_length_8084_cov_4.360315:5330..6754+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGAAGTAACGTCCGACCCTATAATCAGACCTAATTTGTTATTAAC
CCCAAAGAATGATCCGTGTTATGCATGTGGACAGAACTCAAAGAAACGTC
CTACAGTACTTGTCCACCTAACCACTGCTCAACTGGAGAAACGAGCGAAT
GTGGACACATCACCTCTTCTGAACCCATTTGCATCCGGGTGTCCTGAACA
TGTGAAGCTCTGCACTGATTGCAGGTGTTCTACAAAAGGATGGTCAGTGA
TTTGCAATCCTCGTAAATACGGGGCCAAATCCCAGGCAGCATTGGTATCC
TGGAAAAGAAGATATACACCTGCAAGCGTTCGGAAGTCAAGCGAGTGTTA
TATTTGCGCAAGGCTTGCAAAATGTGGGCGAGAAGATCTTGTACCTTCGT
ATATTCCAGGGAAGAGCCCTCGATCTAATCTTCCTCTTCTTGAACTTTTG
TTCTATGATGACCATGCACGCGCCCATTTCTGTTCAGAACTGAGCCAAAG
GTCTAAAATATCTGAGCAAGATGCCCGTGATCTCCTCAAAGAATTGGCAG
AATCTCGATTTTGCTCATTACACCATAACCACACTCGACATTCAAAAGAT
TCGGCGGCCCGCATTGAGCCAAGTCGCAGGGGAGTCAAGCGTGGGTACTG
CGTCTTTAGAGGTCATGGATGCCCCGATACAAGCCAGATTTTTAGACCTA
TCTTGCGACCGTCATTGGATTCCTTGGAAGAATTGGAAGAGTTTGGTGAG
CTTGAGGAGGCGATTGAAAGCCATTCGGGCTTTGCCCTCATAGCTGCAGA
AACCATGGGAAAGCAAGCTTGTGGGTCTTGTAGGTATATTATTTCCAAAG
GAAGAACTGGAACAGTTCCCACTGTGGACACTGCATCGCTAGGCTGTGCT
ACCGACCGATGTCTCGTTGACTGCATCTTCTATGCTCTGGATAACGATGT
GGACAAAAGCCCTCAGTCGACTTACATGCGCGGAAATGAAGCTGTTTTTG
ATAAGGCAAGGTCCCTAAGGGATGCAGTTGTTACGCCATTTTCAGGAGCA
CCCAATGCTCGTTTCTTGCCTGTAAGCAAAGTTCAAAAGCTGAGAAGACT
CTTGCATGCTATGTCCATCAGTGGGACGAAGCATATATGCGACAGAACTG
TAGAGTCAAGAATAGGGCCAGTATTGGCTGCAAGACGTGTTCATTTATAT
GCCCTATCGAGAAAGTGTCGCTGTTACGCCCTGCAAGACTCTCTTTCGGA
TACATTGAACAACTTCATGAGCATTTGCGGAGACAATGAGGATTACCTCT
CACCTAGAGACAGAAGGAAGATGCTGACGGATGTGTGCCAAAGATTCTTT
AAGCAGGCCGAAAATTACAGGCATGGAAGATGGAGGCTTTGGGATGAAAT
TACCGCAATTCCCGCCAAGCTGTAG

protein sequence of Gcaud7892.t1

>Gcaud7892.t1 ID=Gcaud7892.t1|Name=Gcaud7892.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MKEVTSDPIIRPNLLLTPKNDPCYACGQNSKKRPTVLVHLTTAQLEKRAN
VDTSPLLNPFASGCPEHVKLCTDCRCSTKGWSVICNPRKYGAKSQAALVS
WKRRYTPASVRKSSECYICARLAKCGREDLVPSYIPGKSPRSNLPLLELL
FYDDHARAHFCSELSQRSKISEQDARDLLKELAESRFCSLHHNHTRHSKD
SAARIEPSRRGVKRGYCVFRGHGCPDTSQIFRPILRPSLDSLEELEEFGE
LEEAIESHSGFALIAAETMGKQACGSCRYIISKGRTGTVPTVDTASLGCA
TDRCLVDCIFYALDNDVDKSPQSTYMRGNEAVFDKARSLRDAVVTPFSGA
PNARFLPVSKVQKLRRLLHAMSISGTKHICDRTVESRIGPVLAARRVHLY
ALSRKCRCYALQDSLSDTLNNFMSICGDNEDYLSPRDRRKMLTDVCQRFF
KQAENYRHGRWRLWDEITAIPAKL*

mRNA from alignment at NODE_1851_length_8084_cov_4.360315:5330..6754+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7892.t1 ID=Gcaud7892.t1|Name=Gcaud7892.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_1851_length_8084_cov_4.360315:5330..6754+ (Gracilaria caudata M_176_S67 male)
ATGAAGGAAGTAACGTCCGACCCTATAATCAGACCTAATTTGTTATTAAC
CCCAAAGAATGATCCGTGTTATGCATGTGGACAGAACTCAAAGAAACGTC
CTACAGTACTTGTCCACCTAACCACTGCTCAACTGGAGAAACGAGCGAAT
GTGGACACATCACCTCTTCTGAACCCATTTGCATCCGGGTGTCCTGAACA
TGTGAAGCTCTGCACTGATTGCAGGTGTTCTACAAAAGGATGGTCAGTGA
TTTGCAATCCTCGTAAATACGGGGCCAAATCCCAGGCAGCATTGGTATCC
TGGAAAAGAAGATATACACCTGCAAGCGTTCGGAAGTCAAGCGAGTGTTA
TATTTGCGCAAGGCTTGCAAAATGTGGGCGAGAAGATCTTGTACCTTCGT
ATATTCCAGGGAAGAGCCCTCGATCTAATCTTCCTCTTCTTGAACTTTTG
TTCTATGATGACCATGCACGCGCCCATTTCTGTTCAGAACTGAGCCAAAG
GTCTAAAATATCTGAGCAAGATGCCCGTGATCTCCTCAAAGAATTGGCAG
AATCTCGATTTTGCTCATTACACCATAACCACACTCGACATTCAAAAGAT
TCGGCGGCCCGCATTGAGCCAAGTCGCAGGGGAGTCAAGCGTGGGTACTG
CGTCTTTAGAGGTCATGGATGCCCCGATACAAGCCAGATTTTTAGACCTA
TCTTGCGACCGTCATTGGATTCCTTGGAAGAATTGGAAGAGTTTGGTGAG
CTTGAGGAGGCGATTGAAAGCCATTCGGGCTTTGCCCTCATAGCTGCAGA
AACCATGGGAAAGCAAGCTTGTGGGTCTTGTAGGTATATTATTTCCAAAG
GAAGAACTGGAACAGTTCCCACTGTGGACACTGCATCGCTAGGCTGTGCT
ACCGACCGATGTCTCGTTGACTGCATCTTCTATGCTCTGGATAACGATGT
GGACAAAAGCCCTCAGTCGACTTACATGCGCGGAAATGAAGCTGTTTTTG
ATAAGGCAAGGTCCCTAAGGGATGCAGTTGTTACGCCATTTTCAGGAGCA
CCCAATGCTCGTTTCTTGCCTGTAAGCAAAGTTCAAAAGCTGAGAAGACT
CTTGCATGCTATGTCCATCAGTGGGACGAAGCATATATGCGACAGAACTG
TAGAGTCAAGAATAGGGCCAGTATTGGCTGCAAGACGTGTTCATTTATAT
GCCCTATCGAGAAAGTGTCGCTGTTACGCCCTGCAAGACTCTCTTTCGGA
TACATTGAACAACTTCATGAGCATTTGCGGAGACAATGAGGATTACCTCT
CACCTAGAGACAGAAGGAAGATGCTGACGGATGTGTGCCAAAGATTCTTT
AAGCAGGCCGAAAATTACAGGCATGGAAGATGGAGGCTTTGGGATGAAAT
TACCGCAATTCCCGCCAAGCTGTAG

Coding sequence (CDS) from alignment at NODE_1851_length_8084_cov_4.360315:5330..6754+

>Gcaud7892.t1 ID=Gcaud7892.t1|Name=Gcaud7892.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_1851_length_8084_cov_4.360315:5330..6754+ (Gracilaria caudata M_176_S67 male)
ATGAAGGAAGTAACGTCCGACCCTATAATCAGACCTAATTTGTTATTAAC
CCCAAAGAATGATCCGTGTTATGCATGTGGACAGAACTCAAAGAAACGTC
CTACAGTACTTGTCCACCTAACCACTGCTCAACTGGAGAAACGAGCGAAT
GTGGACACATCACCTCTTCTGAACCCATTTGCATCCGGGTGTCCTGAACA
TGTGAAGCTCTGCACTGATTGCAGGTGTTCTACAAAAGGATGGTCAGTGA
TTTGCAATCCTCGTAAATACGGGGCCAAATCCCAGGCAGCATTGGTATCC
TGGAAAAGAAGATATACACCTGCAAGCGTTCGGAAGTCAAGCGAGTGTTA
TATTTGCGCAAGGCTTGCAAAATGTGGGCGAGAAGATCTTGTACCTTCGT
ATATTCCAGGGAAGAGCCCTCGATCTAATCTTCCTCTTCTTGAACTTTTG
TTCTATGATGACCATGCACGCGCCCATTTCTGTTCAGAACTGAGCCAAAG
GTCTAAAATATCTGAGCAAGATGCCCGTGATCTCCTCAAAGAATTGGCAG
AATCTCGATTTTGCTCATTACACCATAACCACACTCGACATTCAAAAGAT
TCGGCGGCCCGCATTGAGCCAAGTCGCAGGGGAGTCAAGCGTGGGTACTG
CGTCTTTAGAGGTCATGGATGCCCCGATACAAGCCAGATTTTTAGACCTA
TCTTGCGACCGTCATTGGATTCCTTGGAAGAATTGGAAGAGTTTGGTGAG
CTTGAGGAGGCGATTGAAAGCCATTCGGGCTTTGCCCTCATAGCTGCAGA
AACCATGGGAAAGCAAGCTTGTGGGTCTTGTAGGTATATTATTTCCAAAG
GAAGAACTGGAACAGTTCCCACTGTGGACACTGCATCGCTAGGCTGTGCT
ACCGACCGATGTCTCGTTGACTGCATCTTCTATGCTCTGGATAACGATGT
GGACAAAAGCCCTCAGTCGACTTACATGCGCGGAAATGAAGCTGTTTTTG
ATAAGGCAAGGTCCCTAAGGGATGCAGTTGTTACGCCATTTTCAGGAGCA
CCCAATGCTCGTTTCTTGCCTGTAAGCAAAGTTCAAAAGCTGAGAAGACT
CTTGCATGCTATGTCCATCAGTGGGACGAAGCATATATGCGACAGAACTG
TAGAGTCAAGAATAGGGCCAGTATTGGCTGCAAGACGTGTTCATTTATAT
GCCCTATCGAGAAAGTGTCGCTGTTACGCCCTGCAAGACTCTCTTTCGGA
TACATTGAACAACTTCATGAGCATTTGCGGAGACAATGAGGATTACCTCT
CACCTAGAGACAGAAGGAAGATGCTGACGGATGTGTGCCAAAGATTCTTT
AAGCAGGCCGAAAATTACAGGCATGGAAGATGGAGGCTTTGGGATGAAAT
TACCGCAATTCCCGCCAAGCTGTAG