Gcaud7888.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7888.t1
Unique Name	Gcaud7888.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_465_length_24681_cov_4.375641	contig	NODE_465_length_24681_cov_4.375641:20337..21380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4565.Traes_2DL_DA1A74C0D.2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07583
Evalue	1.34e-51
EggNOG OGs	COG1258@1\|root,KOG2364@2759\|Eukaryota,37IM8@33090\|Viridiplantae,3GDMV@35493\|Streptophyta,3KM5C@4447\|Liliopsida,3IAM7@38820\|Poales
EC	5.4.99.25
Description	tRNA pseudouridine synthase
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7888	Gcaud7888	Gracilaria caudata M_176_S67 male	gene	NODE_465_length_24681_cov_4.375641 20337..21380 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7888.t1.start1	Gcaud7888.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_465_length_24681_cov_4.375641 20337..20339 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7888.t1.CDS1	Gcaud7888.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_465_length_24681_cov_4.375641 20337..21380 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7888.t1.exon1	Gcaud7888.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_465_length_24681_cov_4.375641 20337..21380 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7888.t1.stop1	Gcaud7888.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_465_length_24681_cov_4.375641 21378..21380 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7888.t1	Gcaud7888.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_465_length_24681_cov_4.375641 20337..21380 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_465_length_24681_cov_4.375641:20337..21380+
coding sequence from alignment at NODE_465_length_24681_cov_4.375641:20337..21380+

mRNA sequence

>Gcaud7888.t1 ID=Gcaud7888.t1|Name=Gcaud7888.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp
MRDALRAALRPLMMPLRYDAEAEVVFRLFYEHRETAGEGDFLRESCGGVG
GGSGAGKRARADVSITAAQKVLDGMSDKEFEVAAPHLMQLPPVAQPVSVS
VRVETVPLLLAARYTKLSRVVSQTPWNVASSRTVNGRVERSVQSVVERAV
RQVILHERATFTAGGREDVDVRMLGDGRPFVLELQGANVVPSLVDARMID
DIVARIDGGVVRVHGLRVVPSTYFAKMRQYEAEKRKHYRCVIYTEGVLDE
HNLQLLNMQNVSIAQRTPLRVLHRRTQAVRHKMIFSTHVQRVMNEHFVVL
DVIAQAGTYIKEFVHGDNGRTSPSVASLLQCFADIVQLDVTEISQAS*

spliced messenger RNA

>Gcaud7888.t1 ID=Gcaud7888.t1|Name=Gcaud7888.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:20337..21380+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGATGCGCTGCGCGCGGCGCTCAGGCCGTTGATGATGCCGTTGCG
GTATGACGCGGAGGCGGAGGTGGTGTTTCGACTGTTTTATGAGCATCGAG
AGACAGCGGGTGAGGGGGATTTCTTGCGCGAAAGCTGTGGAGGCGTAGGC
GGTGGTAGCGGTGCTGGCAAGCGTGCGCGAGCAGATGTTTCCATCACAGC
CGCACAAAAAGTTCTAGACGGCATGTCCGACAAGGAGTTTGAGGTGGCGG
CGCCTCATCTGATGCAGCTGCCTCCCGTCGCGCAGCCGGTATCCGTGAGT
GTGCGCGTGGAGACTGTGCCGTTGTTGTTGGCCGCGCGTTACACAAAGCT
GTCGCGCGTAGTGTCACAGACGCCGTGGAATGTCGCTTCTTCGCGCACCG
TCAACGGCCGCGTGGAGCGAAGTGTGCAGTCTGTCGTGGAACGAGCGGTC
AGGCAAGTTATTTTGCATGAGCGAGCCACCTTCACTGCGGGCGGCCGCGA
AGATGTGGACGTGCGAATGCTGGGCGATGGCCGTCCCTTCGTGTTGGAGT
TACAAGGCGCCAACGTTGTGCCTTCCCTTGTGGATGCACGCATGATCGAC
GACATTGTTGCGCGCATTGACGGCGGCGTTGTGCGCGTGCATGGCCTGCG
CGTCGTGCCCAGTACTTACTTTGCTAAGATGAGGCAGTACGAAGCTGAGA
AGCGAAAGCATTATCGATGTGTGATTTATACGGAAGGTGTGTTGGATGAG
CATAACTTGCAACTGCTCAATATGCAAAACGTATCCATTGCACAACGCAC
GCCGCTGCGCGTTCTGCATCGGAGAACGCAGGCCGTGCGCCACAAGATGA
TCTTTTCTACTCACGTGCAACGCGTCATGAACGAGCATTTCGTCGTGCTG
GATGTGATTGCACAAGCCGGGACTTACATCAAGGAGTTTGTGCATGGTGA
TAATGGCCGCACTTCTCCCAGTGTCGCTTCCTTGTTACAATGCTTTGCCG
ATATTGTTCAGCTGGATGTGACCGAGATTAGTCAGGCCAGCTGA

protein sequence of Gcaud7888.t1

>Gcaud7888.t1 ID=Gcaud7888.t1|Name=Gcaud7888.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=348bp
MRDALRAALRPLMMPLRYDAEAEVVFRLFYEHRETAGEGDFLRESCGGVG
GGSGAGKRARADVSITAAQKVLDGMSDKEFEVAAPHLMQLPPVAQPVSVS
VRVETVPLLLAARYTKLSRVVSQTPWNVASSRTVNGRVERSVQSVVERAV
RQVILHERATFTAGGREDVDVRMLGDGRPFVLELQGANVVPSLVDARMID
DIVARIDGGVVRVHGLRVVPSTYFAKMRQYEAEKRKHYRCVIYTEGVLDE
HNLQLLNMQNVSIAQRTPLRVLHRRTQAVRHKMIFSTHVQRVMNEHFVVL
DVIAQAGTYIKEFVHGDNGRTSPSVASLLQCFADIVQLDVTEISQAS*

mRNA from alignment at NODE_465_length_24681_cov_4.375641:20337..21380+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7888.t1 ID=Gcaud7888.t1|Name=Gcaud7888.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:20337..21380+ (Gracilaria caudata M_176_S67 male)
ATGCGCGATGCGCTGCGCGCGGCGCTCAGGCCGTTGATGATGCCGTTGCG
GTATGACGCGGAGGCGGAGGTGGTGTTTCGACTGTTTTATGAGCATCGAG
AGACAGCGGGTGAGGGGGATTTCTTGCGCGAAAGCTGTGGAGGCGTAGGC
GGTGGTAGCGGTGCTGGCAAGCGTGCGCGAGCAGATGTTTCCATCACAGC
CGCACAAAAAGTTCTAGACGGCATGTCCGACAAGGAGTTTGAGGTGGCGG
CGCCTCATCTGATGCAGCTGCCTCCCGTCGCGCAGCCGGTATCCGTGAGT
GTGCGCGTGGAGACTGTGCCGTTGTTGTTGGCCGCGCGTTACACAAAGCT
GTCGCGCGTAGTGTCACAGACGCCGTGGAATGTCGCTTCTTCGCGCACCG
TCAACGGCCGCGTGGAGCGAAGTGTGCAGTCTGTCGTGGAACGAGCGGTC
AGGCAAGTTATTTTGCATGAGCGAGCCACCTTCACTGCGGGCGGCCGCGA
AGATGTGGACGTGCGAATGCTGGGCGATGGCCGTCCCTTCGTGTTGGAGT
TACAAGGCGCCAACGTTGTGCCTTCCCTTGTGGATGCACGCATGATCGAC
GACATTGTTGCGCGCATTGACGGCGGCGTTGTGCGCGTGCATGGCCTGCG
CGTCGTGCCCAGTACTTACTTTGCTAAGATGAGGCAGTACGAAGCTGAGA
AGCGAAAGCATTATCGATGTGTGATTTATACGGAAGGTGTGTTGGATGAG
CATAACTTGCAACTGCTCAATATGCAAAACGTATCCATTGCACAACGCAC
GCCGCTGCGCGTTCTGCATCGGAGAACGCAGGCCGTGCGCCACAAGATGA
TCTTTTCTACTCACGTGCAACGCGTCATGAACGAGCATTTCGTCGTGCTG
GATGTGATTGCACAAGCCGGGACTTACATCAAGGAGTTTGTGCATGGTGA
TAATGGCCGCACTTCTCCCAGTGTCGCTTCCTTGTTACAATGCTTTGCCG
ATATTGTTCAGCTGGATGTGACCGAGATTAGTCAGGCCAGCTGA

Coding sequence (CDS) from alignment at NODE_465_length_24681_cov_4.375641:20337..21380+

>Gcaud7888.t1 ID=Gcaud7888.t1|Name=Gcaud7888.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1044bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:20337..21380+ (Gracilaria caudata M_176_S67 male)
ATGCGCGATGCGCTGCGCGCGGCGCTCAGGCCGTTGATGATGCCGTTGCG
GTATGACGCGGAGGCGGAGGTGGTGTTTCGACTGTTTTATGAGCATCGAG
AGACAGCGGGTGAGGGGGATTTCTTGCGCGAAAGCTGTGGAGGCGTAGGC
GGTGGTAGCGGTGCTGGCAAGCGTGCGCGAGCAGATGTTTCCATCACAGC
CGCACAAAAAGTTCTAGACGGCATGTCCGACAAGGAGTTTGAGGTGGCGG
CGCCTCATCTGATGCAGCTGCCTCCCGTCGCGCAGCCGGTATCCGTGAGT
GTGCGCGTGGAGACTGTGCCGTTGTTGTTGGCCGCGCGTTACACAAAGCT
GTCGCGCGTAGTGTCACAGACGCCGTGGAATGTCGCTTCTTCGCGCACCG
TCAACGGCCGCGTGGAGCGAAGTGTGCAGTCTGTCGTGGAACGAGCGGTC
AGGCAAGTTATTTTGCATGAGCGAGCCACCTTCACTGCGGGCGGCCGCGA
AGATGTGGACGTGCGAATGCTGGGCGATGGCCGTCCCTTCGTGTTGGAGT
TACAAGGCGCCAACGTTGTGCCTTCCCTTGTGGATGCACGCATGATCGAC
GACATTGTTGCGCGCATTGACGGCGGCGTTGTGCGCGTGCATGGCCTGCG
CGTCGTGCCCAGTACTTACTTTGCTAAGATGAGGCAGTACGAAGCTGAGA
AGCGAAAGCATTATCGATGTGTGATTTATACGGAAGGTGTGTTGGATGAG
CATAACTTGCAACTGCTCAATATGCAAAACGTATCCATTGCACAACGCAC
GCCGCTGCGCGTTCTGCATCGGAGAACGCAGGCCGTGCGCCACAAGATGA
TCTTTTCTACTCACGTGCAACGCGTCATGAACGAGCATTTCGTCGTGCTG
GATGTGATTGCACAAGCCGGGACTTACATCAAGGAGTTTGTGCATGGTGA
TAATGGCCGCACTTCTCCCAGTGTCGCTTCCTTGTTACAATGCTTTGCCG
ATATTGTTCAGCTGGATGTGACCGAGATTAGTCAGGCCAGCTGA