Gcaud7883.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7883.t1
Unique Name	Gcaud7883.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	587

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_465_length_24681_cov_4.375641	contig	NODE_465_length_24681_cov_4.375641:9128..10888 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13035.Dacsa_3262
PFAMs	Amino_oxidase,NAD_binding_8
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01960
KEGG ko	ko:K09835
KEGG Reaction	R07512
KEGG Pathway	ko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG Module	M00097
Evalue	4.03e-129
EggNOG OGs	COG1233@1\|root,COG1233@2\|Bacteria,1G0AY@1117\|Cyanobacteria
EC	5.2.1.13
Description	COG1233 Phytoene dehydrogenase and related
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7883	Gcaud7883	Gracilaria caudata M_176_S67 male	gene	NODE_465_length_24681_cov_4.375641 9128..10888 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7883.t1.start1	Gcaud7883.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_465_length_24681_cov_4.375641 9128..9130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7883.t1.CDS1	Gcaud7883.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_465_length_24681_cov_4.375641 9128..10888 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7883.t1.exon1	Gcaud7883.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_465_length_24681_cov_4.375641 9128..10888 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7883.t1.stop1	Gcaud7883.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_465_length_24681_cov_4.375641 10886..10888 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7883.t1	Gcaud7883.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_465_length_24681_cov_4.375641 9128..10888 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_465_length_24681_cov_4.375641:9128..10888+
coding sequence from alignment at NODE_465_length_24681_cov_4.375641:9128..10888+

mRNA sequence

>Gcaud7883.t1 ID=Gcaud7883.t1|Name=Gcaud7883.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=587bp
MGILAFSSFAGVPLVDKRLQVSHSESLSKRHLLAHASRGRVLIRSSVEDE
SYDVITIGSGLGGLCTSALLSTYNLRTLTLESHSEPGGAAHSFSRRTPYG
TITFESGPHLFSGLQFPSENPMYHVLRAVDAKLDVTRYDAWGVFLPNTYV
RATLRAGEPLFEQLLDVAGGPNAHNEMRNLTRALRPLGEAASLLPPAALR
ASDAIGSLRVAARYVFSLSSLSQIPRLSQLSRPFSTVLDRFVSDEFARNF
LNLLCFLLAGATAERVPVAEVAFMFREWLGDSAVHGAPVLQRPVGGASAI
AKALIEAIQRRGGVVQTGSHVRHVIIEDGRAIGVQLKSGRTIRANKAIIS
NVSALDVNQLLPGWKADDEKPYAKNSGGEMCPSFMHLHVALELTEDIRSR
LPHGRLEPNYVSVEDWTRGLDHPDNVVLISVPSALDENVCPAGHAVLHAY
TPATEPYERWRTLEPGTLEYDLYKEKRSQILWRAVNRIFNTDIRPMAYVK
LVGTPRTHSRFLRRRDGSYGPKVDARMRGLGLPFPGSGEYPEGFYCVGDG
VFPGVGVPAVAGSAWIVANGLVSVQEHVDLLRRNGI*

spliced messenger RNA

>Gcaud7883.t1 ID=Gcaud7883.t1|Name=Gcaud7883.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1761bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:9128..10888+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATCCTCGCATTTAGCTCTTTTGCTGGAGTTCCGCTGGTTGACAA
ACGATTGCAAGTCAGCCATTCAGAAAGCCTTTCCAAACGACATCTACTTG
CTCACGCCAGCCGTGGTAGAGTTTTAATTCGGAGCTCAGTAGAGGACGAA
AGTTATGATGTTATCACAATTGGCTCAGGTCTAGGTGGTCTCTGCACATC
AGCATTGCTTTCCACTTATAATCTTCGCACTCTCACACTAGAATCACACT
CAGAGCCTGGTGGTGCAGCTCATTCTTTTTCGAGAAGAACTCCCTACGGG
ACTATAACTTTTGAGTCAGGGCCGCATCTATTCTCAGGGCTTCAGTTTCC
CTCCGAGAATCCTATGTACCATGTTCTGCGGGCCGTTGATGCAAAACTTG
ACGTCACCCGCTATGATGCCTGGGGAGTGTTCCTTCCGAATACTTATGTC
CGGGCAACACTTCGAGCCGGAGAACCACTTTTTGAACAACTGCTTGACGT
AGCCGGAGGACCAAACGCGCACAACGAAATGAGAAATCTCACAAGAGCTT
TGCGCCCTTTAGGGGAGGCTGCATCTCTGTTACCACCAGCCGCACTACGA
GCTTCTGATGCTATAGGTTCTCTTCGAGTTGCCGCACGATATGTTTTTTC
CTTGAGCTCCCTATCTCAAATCCCACGCCTTTCGCAACTGTCGCGCCCAT
TTTCCACAGTTCTAGATCGCTTCGTCTCGGACGAGTTCGCTCGCAACTTT
CTGAACCTCCTGTGTTTCTTGCTGGCTGGTGCAACAGCAGAACGGGTCCC
CGTCGCCGAAGTGGCATTCATGTTTCGAGAGTGGCTCGGTGATAGTGCCG
TCCATGGTGCGCCAGTTCTACAAAGACCTGTGGGAGGAGCTTCTGCCATA
GCAAAGGCACTCATCGAAGCCATACAAAGGCGAGGCGGCGTCGTGCAGAC
GGGATCTCACGTGAGACATGTTATAATCGAAGATGGTAGAGCAATCGGAG
TACAGCTGAAGTCTGGTCGAACTATTCGAGCGAACAAAGCTATCATTTCA
AACGTATCTGCTTTGGATGTTAACCAGTTGCTGCCAGGTTGGAAGGCCGA
TGATGAGAAGCCTTATGCAAAAAACAGTGGTGGTGAAATGTGTCCATCTT
TTATGCACCTTCACGTTGCTTTAGAATTAACAGAAGACATTCGATCTCGC
TTACCTCATGGAAGGTTAGAGCCCAACTATGTCAGCGTTGAAGACTGGAC
TCGCGGTTTGGATCATCCTGACAATGTGGTTCTCATTAGTGTGCCGTCCG
CTCTGGACGAGAATGTCTGTCCAGCCGGACACGCAGTGCTACATGCCTAC
ACACCAGCCACAGAACCATACGAAAGATGGCGTACTTTGGAGCCGGGTAC
ACTTGAGTACGATTTATATAAAGAAAAACGGTCTCAGATCTTGTGGAGAG
CGGTCAATCGAATCTTCAATACTGACATTCGTCCGATGGCATACGTTAAA
CTCGTTGGTACGCCACGGACCCACTCCCGCTTTCTTCGCCGCCGTGACGG
GTCGTATGGTCCGAAAGTTGACGCAAGGATGAGAGGTTTAGGTCTTCCAT
TTCCTGGAAGTGGCGAATACCCAGAGGGATTTTATTGCGTAGGTGATGGT
GTGTTTCCAGGAGTGGGAGTACCTGCTGTCGCAGGTAGTGCTTGGATAGT
AGCGAACGGATTAGTTAGCGTTCAAGAGCATGTAGACCTTCTGAGGAGAA
ACGGTATATGA

protein sequence of Gcaud7883.t1

>Gcaud7883.t1 ID=Gcaud7883.t1|Name=Gcaud7883.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=587bp
MGILAFSSFAGVPLVDKRLQVSHSESLSKRHLLAHASRGRVLIRSSVEDE
SYDVITIGSGLGGLCTSALLSTYNLRTLTLESHSEPGGAAHSFSRRTPYG
TITFESGPHLFSGLQFPSENPMYHVLRAVDAKLDVTRYDAWGVFLPNTYV
RATLRAGEPLFEQLLDVAGGPNAHNEMRNLTRALRPLGEAASLLPPAALR
ASDAIGSLRVAARYVFSLSSLSQIPRLSQLSRPFSTVLDRFVSDEFARNF
LNLLCFLLAGATAERVPVAEVAFMFREWLGDSAVHGAPVLQRPVGGASAI
AKALIEAIQRRGGVVQTGSHVRHVIIEDGRAIGVQLKSGRTIRANKAIIS
NVSALDVNQLLPGWKADDEKPYAKNSGGEMCPSFMHLHVALELTEDIRSR
LPHGRLEPNYVSVEDWTRGLDHPDNVVLISVPSALDENVCPAGHAVLHAY
TPATEPYERWRTLEPGTLEYDLYKEKRSQILWRAVNRIFNTDIRPMAYVK
LVGTPRTHSRFLRRRDGSYGPKVDARMRGLGLPFPGSGEYPEGFYCVGDG
VFPGVGVPAVAGSAWIVANGLVSVQEHVDLLRRNGI*

mRNA from alignment at NODE_465_length_24681_cov_4.375641:9128..10888+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7883.t1 ID=Gcaud7883.t1|Name=Gcaud7883.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1761bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:9128..10888+ (Gracilaria caudata M_176_S67 male)
ATGGGTATCCTCGCATTTAGCTCTTTTGCTGGAGTTCCGCTGGTTGACAA
ACGATTGCAAGTCAGCCATTCAGAAAGCCTTTCCAAACGACATCTACTTG
CTCACGCCAGCCGTGGTAGAGTTTTAATTCGGAGCTCAGTAGAGGACGAA
AGTTATGATGTTATCACAATTGGCTCAGGTCTAGGTGGTCTCTGCACATC
AGCATTGCTTTCCACTTATAATCTTCGCACTCTCACACTAGAATCACACT
CAGAGCCTGGTGGTGCAGCTCATTCTTTTTCGAGAAGAACTCCCTACGGG
ACTATAACTTTTGAGTCAGGGCCGCATCTATTCTCAGGGCTTCAGTTTCC
CTCCGAGAATCCTATGTACCATGTTCTGCGGGCCGTTGATGCAAAACTTG
ACGTCACCCGCTATGATGCCTGGGGAGTGTTCCTTCCGAATACTTATGTC
CGGGCAACACTTCGAGCCGGAGAACCACTTTTTGAACAACTGCTTGACGT
AGCCGGAGGACCAAACGCGCACAACGAAATGAGAAATCTCACAAGAGCTT
TGCGCCCTTTAGGGGAGGCTGCATCTCTGTTACCACCAGCCGCACTACGA
GCTTCTGATGCTATAGGTTCTCTTCGAGTTGCCGCACGATATGTTTTTTC
CTTGAGCTCCCTATCTCAAATCCCACGCCTTTCGCAACTGTCGCGCCCAT
TTTCCACAGTTCTAGATCGCTTCGTCTCGGACGAGTTCGCTCGCAACTTT
CTGAACCTCCTGTGTTTCTTGCTGGCTGGTGCAACAGCAGAACGGGTCCC
CGTCGCCGAAGTGGCATTCATGTTTCGAGAGTGGCTCGGTGATAGTGCCG
TCCATGGTGCGCCAGTTCTACAAAGACCTGTGGGAGGAGCTTCTGCCATA
GCAAAGGCACTCATCGAAGCCATACAAAGGCGAGGCGGCGTCGTGCAGAC
GGGATCTCACGTGAGACATGTTATAATCGAAGATGGTAGAGCAATCGGAG
TACAGCTGAAGTCTGGTCGAACTATTCGAGCGAACAAAGCTATCATTTCA
AACGTATCTGCTTTGGATGTTAACCAGTTGCTGCCAGGTTGGAAGGCCGA
TGATGAGAAGCCTTATGCAAAAAACAGTGGTGGTGAAATGTGTCCATCTT
TTATGCACCTTCACGTTGCTTTAGAATTAACAGAAGACATTCGATCTCGC
TTACCTCATGGAAGGTTAGAGCCCAACTATGTCAGCGTTGAAGACTGGAC
TCGCGGTTTGGATCATCCTGACAATGTGGTTCTCATTAGTGTGCCGTCCG
CTCTGGACGAGAATGTCTGTCCAGCCGGACACGCAGTGCTACATGCCTAC
ACACCAGCCACAGAACCATACGAAAGATGGCGTACTTTGGAGCCGGGTAC
ACTTGAGTACGATTTATATAAAGAAAAACGGTCTCAGATCTTGTGGAGAG
CGGTCAATCGAATCTTCAATACTGACATTCGTCCGATGGCATACGTTAAA
CTCGTTGGTACGCCACGGACCCACTCCCGCTTTCTTCGCCGCCGTGACGG
GTCGTATGGTCCGAAAGTTGACGCAAGGATGAGAGGTTTAGGTCTTCCAT
TTCCTGGAAGTGGCGAATACCCAGAGGGATTTTATTGCGTAGGTGATGGT
GTGTTTCCAGGAGTGGGAGTACCTGCTGTCGCAGGTAGTGCTTGGATAGT
AGCGAACGGATTAGTTAGCGTTCAAGAGCATGTAGACCTTCTGAGGAGAA
ACGGTATATGA

Coding sequence (CDS) from alignment at NODE_465_length_24681_cov_4.375641:9128..10888+

>Gcaud7883.t1 ID=Gcaud7883.t1|Name=Gcaud7883.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1761bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:9128..10888+ (Gracilaria caudata M_176_S67 male)
ATGGGTATCCTCGCATTTAGCTCTTTTGCTGGAGTTCCGCTGGTTGACAA
ACGATTGCAAGTCAGCCATTCAGAAAGCCTTTCCAAACGACATCTACTTG
CTCACGCCAGCCGTGGTAGAGTTTTAATTCGGAGCTCAGTAGAGGACGAA
AGTTATGATGTTATCACAATTGGCTCAGGTCTAGGTGGTCTCTGCACATC
AGCATTGCTTTCCACTTATAATCTTCGCACTCTCACACTAGAATCACACT
CAGAGCCTGGTGGTGCAGCTCATTCTTTTTCGAGAAGAACTCCCTACGGG
ACTATAACTTTTGAGTCAGGGCCGCATCTATTCTCAGGGCTTCAGTTTCC
CTCCGAGAATCCTATGTACCATGTTCTGCGGGCCGTTGATGCAAAACTTG
ACGTCACCCGCTATGATGCCTGGGGAGTGTTCCTTCCGAATACTTATGTC
CGGGCAACACTTCGAGCCGGAGAACCACTTTTTGAACAACTGCTTGACGT
AGCCGGAGGACCAAACGCGCACAACGAAATGAGAAATCTCACAAGAGCTT
TGCGCCCTTTAGGGGAGGCTGCATCTCTGTTACCACCAGCCGCACTACGA
GCTTCTGATGCTATAGGTTCTCTTCGAGTTGCCGCACGATATGTTTTTTC
CTTGAGCTCCCTATCTCAAATCCCACGCCTTTCGCAACTGTCGCGCCCAT
TTTCCACAGTTCTAGATCGCTTCGTCTCGGACGAGTTCGCTCGCAACTTT
CTGAACCTCCTGTGTTTCTTGCTGGCTGGTGCAACAGCAGAACGGGTCCC
CGTCGCCGAAGTGGCATTCATGTTTCGAGAGTGGCTCGGTGATAGTGCCG
TCCATGGTGCGCCAGTTCTACAAAGACCTGTGGGAGGAGCTTCTGCCATA
GCAAAGGCACTCATCGAAGCCATACAAAGGCGAGGCGGCGTCGTGCAGAC
GGGATCTCACGTGAGACATGTTATAATCGAAGATGGTAGAGCAATCGGAG
TACAGCTGAAGTCTGGTCGAACTATTCGAGCGAACAAAGCTATCATTTCA
AACGTATCTGCTTTGGATGTTAACCAGTTGCTGCCAGGTTGGAAGGCCGA
TGATGAGAAGCCTTATGCAAAAAACAGTGGTGGTGAAATGTGTCCATCTT
TTATGCACCTTCACGTTGCTTTAGAATTAACAGAAGACATTCGATCTCGC
TTACCTCATGGAAGGTTAGAGCCCAACTATGTCAGCGTTGAAGACTGGAC
TCGCGGTTTGGATCATCCTGACAATGTGGTTCTCATTAGTGTGCCGTCCG
CTCTGGACGAGAATGTCTGTCCAGCCGGACACGCAGTGCTACATGCCTAC
ACACCAGCCACAGAACCATACGAAAGATGGCGTACTTTGGAGCCGGGTAC
ACTTGAGTACGATTTATATAAAGAAAAACGGTCTCAGATCTTGTGGAGAG
CGGTCAATCGAATCTTCAATACTGACATTCGTCCGATGGCATACGTTAAA
CTCGTTGGTACGCCACGGACCCACTCCCGCTTTCTTCGCCGCCGTGACGG
GTCGTATGGTCCGAAAGTTGACGCAAGGATGAGAGGTTTAGGTCTTCCAT
TTCCTGGAAGTGGCGAATACCCAGAGGGATTTTATTGCGTAGGTGATGGT
GTGTTTCCAGGAGTGGGAGTACCTGCTGTCGCAGGTAGTGCTTGGATAGT
AGCGAACGGATTAGTTAGCGTTCAAGAGCATGTAGACCTTCTGAGGAGAA
ACGGTATATGA