Gcaud7714.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7714.t1
Unique NameGcaud7714.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_982_length_15525_cov_4.305624contigNODE_982_length_15525_cov_4.305624:5139..5825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7714Gcaud7714Gracilaria caudata M_176_S67 malegeneNODE_982_length_15525_cov_4.305624 5139..5825 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7714.t1.stop1Gcaud7714.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_982_length_15525_cov_4.305624 5139..5141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7714.t1.CDS1Gcaud7714.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_982_length_15525_cov_4.305624 5139..5825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7714.t1.exon1Gcaud7714.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_982_length_15525_cov_4.305624 5139..5825 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7714.t1.start1Gcaud7714.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_982_length_15525_cov_4.305624 5823..5825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7714.t1Gcaud7714.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_982_length_15525_cov_4.305624 5139..5825 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7714.t1 ID=Gcaud7714.t1|Name=Gcaud7714.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=229bp
MTSPFDKSLKSAEELIFKSKDVVKGKSLADSGIDPSWMASYAAIARRCRD
DRKVGLSRYPYEPGPSVSAFCGGFFENRQWPIRLALEKQSSMKTVAMHEA
NNINATGYWLSFYEASIQLRQEAITENKQTEAERYDVWAILAVRYALRVL
GLRTEFYKLASEDPVTAKLILPGLERRLDIPAADNIVDSMETLDSHMMTQ
LMKAVATMKTSNAKNKAGGQKGGAADGQ*
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spliced messenger RNA

>Gcaud7714.t1 ID=Gcaud7714.t1|Name=Gcaud7714.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_982_length_15525_cov_4.305624:5139..5825- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCTCCTTTTGATAAAAGCTTGAAAAGCGCAGAAGAGCTGATCTT
TAAATCCAAGGATGTTGTTAAAGGCAAGTCGCTCGCGGATTCTGGAATTG
ATCCGTCTTGGATGGCATCTTATGCCGCAATTGCGCGGCGTTGTCGAGAT
GATCGTAAGGTTGGTTTGTCTCGGTATCCCTACGAGCCTGGCCCATCAGT
GTCCGCTTTTTGCGGTGGGTTCTTCGAAAATCGCCAATGGCCGATTAGGC
TCGCACTCGAGAAGCAATCCAGCATGAAGACTGTTGCAATGCACGAGGCA
AATAACATAAACGCAACAGGTTATTGGCTATCGTTCTATGAGGCCAGTAT
TCAACTTCGTCAGGAGGCCATTACGGAAAACAAACAGACGGAAGCCGAAA
GATATGACGTCTGGGCAATTTTGGCGGTTAGATATGCTCTCCGAGTTCTC
GGGCTTCGTACTGAGTTCTACAAACTGGCTTCTGAAGACCCCGTGACAGC
AAAGCTTATCCTACCAGGCCTGGAACGTCGTCTCGATATACCGGCCGCAG
ACAATATCGTCGATTCAATGGAAACTCTAGATTCACATATGATGACACAA
TTGATGAAGGCAGTAGCCACCATGAAGACCAGCAACGCAAAGAACAAAGC
TGGCGGACAAAAGGGTGGCGCTGCCGATGGCCAGTAG
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protein sequence of Gcaud7714.t1

>Gcaud7714.t1 ID=Gcaud7714.t1|Name=Gcaud7714.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
MTSPFDKSLKSAEELIFKSKDVVKGKSLADSGIDPSWMASYAAIARRCRD
DRKVGLSRYPYEPGPSVSAFCGGFFENRQWPIRLALEKQSSMKTVAMHEA
NNINATGYWLSFYEASIQLRQEAITENKQTEAERYDVWAILAVRYALRVL
GLRTEFYKLASEDPVTAKLILPGLERRLDIPAADNIVDSMETLDSHMMTQ
LMKAVATMKTSNAKNKAGGQKGGAADGQ*
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mRNA from alignment at NODE_982_length_15525_cov_4.305624:5139..5825-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7714.t1 ID=Gcaud7714.t1|Name=Gcaud7714.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_982_length_15525_cov_4.305624:5139..5825- (Gracilaria caudata M_176_S67 male)
ATGACGTCTCCTTTTGATAAAAGCTTGAAAAGCGCAGAAGAGCTGATCTT
TAAATCCAAGGATGTTGTTAAAGGCAAGTCGCTCGCGGATTCTGGAATTG
ATCCGTCTTGGATGGCATCTTATGCCGCAATTGCGCGGCGTTGTCGAGAT
GATCGTAAGGTTGGTTTGTCTCGGTATCCCTACGAGCCTGGCCCATCAGT
GTCCGCTTTTTGCGGTGGGTTCTTCGAAAATCGCCAATGGCCGATTAGGC
TCGCACTCGAGAAGCAATCCAGCATGAAGACTGTTGCAATGCACGAGGCA
AATAACATAAACGCAACAGGTTATTGGCTATCGTTCTATGAGGCCAGTAT
TCAACTTCGTCAGGAGGCCATTACGGAAAACAAACAGACGGAAGCCGAAA
GATATGACGTCTGGGCAATTTTGGCGGTTAGATATGCTCTCCGAGTTCTC
GGGCTTCGTACTGAGTTCTACAAACTGGCTTCTGAAGACCCCGTGACAGC
AAAGCTTATCCTACCAGGCCTGGAACGTCGTCTCGATATACCGGCCGCAG
ACAATATCGTCGATTCAATGGAAACTCTAGATTCACATATGATGACACAA
TTGATGAAGGCAGTAGCCACCATGAAGACCAGCAACGCAAAGAACAAAGC
TGGCGGACAAAAGGGTGGCGCTGCCGATGGCCAGTAG
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Coding sequence (CDS) from alignment at NODE_982_length_15525_cov_4.305624:5139..5825-

>Gcaud7714.t1 ID=Gcaud7714.t1|Name=Gcaud7714.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=687bp|location=Sequence derived from alignment at NODE_982_length_15525_cov_4.305624:5139..5825- (Gracilaria caudata M_176_S67 male)
ATGACGTCTCCTTTTGATAAAAGCTTGAAAAGCGCAGAAGAGCTGATCTT
TAAATCCAAGGATGTTGTTAAAGGCAAGTCGCTCGCGGATTCTGGAATTG
ATCCGTCTTGGATGGCATCTTATGCCGCAATTGCGCGGCGTTGTCGAGAT
GATCGTAAGGTTGGTTTGTCTCGGTATCCCTACGAGCCTGGCCCATCAGT
GTCCGCTTTTTGCGGTGGGTTCTTCGAAAATCGCCAATGGCCGATTAGGC
TCGCACTCGAGAAGCAATCCAGCATGAAGACTGTTGCAATGCACGAGGCA
AATAACATAAACGCAACAGGTTATTGGCTATCGTTCTATGAGGCCAGTAT
TCAACTTCGTCAGGAGGCCATTACGGAAAACAAACAGACGGAAGCCGAAA
GATATGACGTCTGGGCAATTTTGGCGGTTAGATATGCTCTCCGAGTTCTC
GGGCTTCGTACTGAGTTCTACAAACTGGCTTCTGAAGACCCCGTGACAGC
AAAGCTTATCCTACCAGGCCTGGAACGTCGTCTCGATATACCGGCCGCAG
ACAATATCGTCGATTCAATGGAAACTCTAGATTCACATATGATGACACAA
TTGATGAAGGCAGTAGCCACCATGAAGACCAGCAACGCAAAGAACAAAGC
TGGCGGACAAAAGGGTGGCGCTGCCGATGGCCAGTAG
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