Gcaud7644.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7644.t1
Unique Name	Gcaud7644.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	566

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_240_length_34680_cov_4.545549	contig	NODE_240_length_34680_cov_4.545549:25724..27421 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LG51
Preferred name	GTPBP3
PFAMs	MMR_HSR1,MnmE_helical,TrmE_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00053,RC00209,RC00870
KEGG ko	ko:K03650,ko:K10769
KEGG Reaction	R08701
GOs	GO:0000166,GO:0000959,GO:0000963,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009790,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0070525,GO:0070899,GO:0070900,GO:0071704,GO:0090304,GO:0090646,GO:0097159,GO:0097367,GO:0140053,GO:1900864,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	5.39e-126
EggNOG OGs	COG0486@1\|root,KOG1191@2759\|Eukaryota
Description	GTP binding
COG category	D
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7644	Gcaud7644	Gracilaria caudata M_176_S67 male	gene	NODE_240_length_34680_cov_4.545549 25724..27421 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7644.t1.stop1	Gcaud7644.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_240_length_34680_cov_4.545549 25724..25726 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7644.t1.CDS1	Gcaud7644.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_240_length_34680_cov_4.545549 25724..27421 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7644.t1.exon1	Gcaud7644.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_240_length_34680_cov_4.545549 25724..27421 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7644.t1.start1	Gcaud7644.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_240_length_34680_cov_4.545549 27419..27421 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7644.t1	Gcaud7644.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_240_length_34680_cov_4.545549 25724..27421 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_240_length_34680_cov_4.545549:25724..27421-
coding sequence from alignment at NODE_240_length_34680_cov_4.545549:25724..27421-

mRNA sequence

>Gcaud7644.t1 ID=Gcaud7644.t1|Name=Gcaud7644.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=566bp
MALLFARSVSVPRLTGTTLAAFRKSLCRRWRLLRVAPVTHRHFRVAQLSI
RPTSTRPGSPEVNIYTSPLSSPNANFQEDTIFALSSGAGVTAGVAVIRIS
GPHATSCLRRLLRSQSPSAIPPPRYASLRRLYHPWSDELLDEALVLQFPG
PKSFTGEDVVELHVHGSRAVISAVIDAIADCASPELVVRPAERGEFTRRA
FENGQMDLTAVEGLADLIAAETTMQRKQALRQFTGHLEQTLEAWRTDIKT
CLAHVEAVIDFGDDVDDQVFEQIIPRIRELRDRIQARLRDAHRGEIIRGG
ARVAIVGHPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQMDLNGLAV
TVSDTAGLRESTSDPIEIEGMRRARDAASRADVTVLVHDVTAGGIDAAIR
TLSRRLPPTDSDPDSHKSGKHLICVLNKVDLVDKAERDPLDDACKVFRTS
LLQNEGLTELVDHLESTIRRICEGSSTNDSAGEEGSANSMPIITRARHRH
HMKNAVSALDSFLEGRSGSDPSLYLPMDLAAEDLRIAAKELGAITGKIDC
EEVLDVIFKEFCIGK*

spliced messenger RNA

>Gcaud7644.t1 ID=Gcaud7644.t1|Name=Gcaud7644.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:25724..27421- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTCTGTTTGCCCGGAGTGTTTCGGTTCCGCGCTTAACAGGGAC
GACGCTCGCAGCGTTTCGCAAATCGTTATGCCGTCGATGGCGCCTACTAC
GTGTAGCTCCCGTGACACATCGACATTTTCGTGTTGCGCAGCTGAGCATT
CGTCCCACTTCTACGCGACCAGGCTCGCCAGAGGTTAATATCTACACTTC
CCCGCTCAGCTCTCCAAATGCTAACTTCCAGGAAGATACCATCTTCGCCT
TGTCCTCTGGCGCAGGTGTCACCGCAGGTGTCGCCGTCATTCGAATATCC
GGGCCGCACGCCACCTCTTGCCTTAGGAGATTACTCCGTTCTCAGTCACC
CTCAGCTATTCCACCACCGCGATATGCATCGTTGCGGAGGTTATATCATC
CTTGGTCAGATGAACTGCTTGACGAAGCACTCGTTCTTCAATTCCCAGGT
CCAAAGAGCTTCACTGGGGAGGATGTCGTCGAGTTGCACGTTCATGGTTC
TAGAGCAGTCATCAGCGCAGTAATTGACGCCATTGCCGATTGCGCTTCTC
CCGAACTTGTAGTGCGACCCGCTGAGCGGGGTGAGTTTACCCGACGAGCC
TTTGAAAACGGGCAAATGGACCTCACAGCGGTTGAGGGACTGGCAGACCT
CATAGCGGCCGAAACTACGATGCAGCGAAAACAGGCTCTGCGTCAATTCA
CCGGTCATCTGGAACAAACACTTGAAGCATGGCGCACCGATATCAAAACT
TGCCTGGCTCATGTTGAAGCAGTTATCGACTTTGGCGACGACGTAGATGA
CCAAGTTTTCGAACAAATCATTCCCCGCATACGCGAGCTGCGCGATCGAA
TTCAAGCTCGTCTTCGTGACGCTCACAGAGGAGAGATCATTCGTGGGGGC
GCTCGAGTTGCCATCGTTGGACACCCAAACGCTGGAAAAAGTACGTTGCT
TAATGCGCTTGCAAAGCGACCAGCAGCGATCGTTTCCCCTCACGCAGGTA
CTACTCGGGATGTTGTTGAAGTTCAGATGGATCTTAATGGACTTGCCGTT
ACCGTGAGTGACACTGCAGGACTGCGAGAAAGTACAAGTGATCCCATTGA
AATTGAAGGCATGCGAAGAGCTCGCGACGCTGCTTCTAGAGCAGATGTTA
CGGTTCTGGTCCACGATGTCACAGCAGGAGGCATAGATGCAGCAATACGG
ACGCTATCACGTCGGCTACCGCCGACCGATTCCGACCCAGATTCACACAA
ATCTGGAAAACACTTGATCTGTGTTTTGAACAAGGTAGATTTAGTGGACA
AAGCCGAACGCGACCCTCTGGACGACGCTTGTAAAGTATTCAGAACCAGC
TTACTGCAAAATGAAGGACTCACGGAACTAGTGGATCATTTGGAATCGAC
AATACGAAGAATCTGTGAGGGAAGTAGCACAAACGATTCTGCTGGGGAAG
AAGGGTCCGCGAACAGTATGCCTATTATTACCAGAGCAAGACATAGACAT
CACATGAAGAACGCTGTTTCAGCACTGGACTCTTTTTTGGAAGGCAGATC
TGGTTCGGACCCGTCACTTTATCTGCCCATGGATCTTGCAGCTGAAGACC
TTCGTATCGCCGCCAAGGAACTTGGAGCCATAACCGGAAAAATTGATTGC
GAAGAAGTTCTGGATGTGATCTTCAAAGAATTTTGCATAGGGAAGTGA

protein sequence of Gcaud7644.t1

>Gcaud7644.t1 ID=Gcaud7644.t1|Name=Gcaud7644.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MALLFARSVSVPRLTGTTLAAFRKSLCRRWRLLRVAPVTHRHFRVAQLSI
RPTSTRPGSPEVNIYTSPLSSPNANFQEDTIFALSSGAGVTAGVAVIRIS
GPHATSCLRRLLRSQSPSAIPPPRYASLRRLYHPWSDELLDEALVLQFPG
PKSFTGEDVVELHVHGSRAVISAVIDAIADCASPELVVRPAERGEFTRRA
FENGQMDLTAVEGLADLIAAETTMQRKQALRQFTGHLEQTLEAWRTDIKT
CLAHVEAVIDFGDDVDDQVFEQIIPRIRELRDRIQARLRDAHRGEIIRGG
ARVAIVGHPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQMDLNGLAV
TVSDTAGLRESTSDPIEIEGMRRARDAASRADVTVLVHDVTAGGIDAAIR
TLSRRLPPTDSDPDSHKSGKHLICVLNKVDLVDKAERDPLDDACKVFRTS
LLQNEGLTELVDHLESTIRRICEGSSTNDSAGEEGSANSMPIITRARHRH
HMKNAVSALDSFLEGRSGSDPSLYLPMDLAAEDLRIAAKELGAITGKIDC
EEVLDVIFKEFCIGK*

mRNA from alignment at NODE_240_length_34680_cov_4.545549:25724..27421-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7644.t1 ID=Gcaud7644.t1|Name=Gcaud7644.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:25724..27421- (Gracilaria caudata M_176_S67 male)
ATGGCGCTTCTGTTTGCCCGGAGTGTTTCGGTTCCGCGCTTAACAGGGAC
GACGCTCGCAGCGTTTCGCAAATCGTTATGCCGTCGATGGCGCCTACTAC
GTGTAGCTCCCGTGACACATCGACATTTTCGTGTTGCGCAGCTGAGCATT
CGTCCCACTTCTACGCGACCAGGCTCGCCAGAGGTTAATATCTACACTTC
CCCGCTCAGCTCTCCAAATGCTAACTTCCAGGAAGATACCATCTTCGCCT
TGTCCTCTGGCGCAGGTGTCACCGCAGGTGTCGCCGTCATTCGAATATCC
GGGCCGCACGCCACCTCTTGCCTTAGGAGATTACTCCGTTCTCAGTCACC
CTCAGCTATTCCACCACCGCGATATGCATCGTTGCGGAGGTTATATCATC
CTTGGTCAGATGAACTGCTTGACGAAGCACTCGTTCTTCAATTCCCAGGT
CCAAAGAGCTTCACTGGGGAGGATGTCGTCGAGTTGCACGTTCATGGTTC
TAGAGCAGTCATCAGCGCAGTAATTGACGCCATTGCCGATTGCGCTTCTC
CCGAACTTGTAGTGCGACCCGCTGAGCGGGGTGAGTTTACCCGACGAGCC
TTTGAAAACGGGCAAATGGACCTCACAGCGGTTGAGGGACTGGCAGACCT
CATAGCGGCCGAAACTACGATGCAGCGAAAACAGGCTCTGCGTCAATTCA
CCGGTCATCTGGAACAAACACTTGAAGCATGGCGCACCGATATCAAAACT
TGCCTGGCTCATGTTGAAGCAGTTATCGACTTTGGCGACGACGTAGATGA
CCAAGTTTTCGAACAAATCATTCCCCGCATACGCGAGCTGCGCGATCGAA
TTCAAGCTCGTCTTCGTGACGCTCACAGAGGAGAGATCATTCGTGGGGGC
GCTCGAGTTGCCATCGTTGGACACCCAAACGCTGGAAAAAGTACGTTGCT
TAATGCGCTTGCAAAGCGACCAGCAGCGATCGTTTCCCCTCACGCAGGTA
CTACTCGGGATGTTGTTGAAGTTCAGATGGATCTTAATGGACTTGCCGTT
ACCGTGAGTGACACTGCAGGACTGCGAGAAAGTACAAGTGATCCCATTGA
AATTGAAGGCATGCGAAGAGCTCGCGACGCTGCTTCTAGAGCAGATGTTA
CGGTTCTGGTCCACGATGTCACAGCAGGAGGCATAGATGCAGCAATACGG
ACGCTATCACGTCGGCTACCGCCGACCGATTCCGACCCAGATTCACACAA
ATCTGGAAAACACTTGATCTGTGTTTTGAACAAGGTAGATTTAGTGGACA
AAGCCGAACGCGACCCTCTGGACGACGCTTGTAAAGTATTCAGAACCAGC
TTACTGCAAAATGAAGGACTCACGGAACTAGTGGATCATTTGGAATCGAC
AATACGAAGAATCTGTGAGGGAAGTAGCACAAACGATTCTGCTGGGGAAG
AAGGGTCCGCGAACAGTATGCCTATTATTACCAGAGCAAGACATAGACAT
CACATGAAGAACGCTGTTTCAGCACTGGACTCTTTTTTGGAAGGCAGATC
TGGTTCGGACCCGTCACTTTATCTGCCCATGGATCTTGCAGCTGAAGACC
TTCGTATCGCCGCCAAGGAACTTGGAGCCATAACCGGAAAAATTGATTGC
GAAGAAGTTCTGGATGTGATCTTCAAAGAATTTTGCATAGGGAAGTGA

Coding sequence (CDS) from alignment at NODE_240_length_34680_cov_4.545549:25724..27421-

>Gcaud7644.t1 ID=Gcaud7644.t1|Name=Gcaud7644.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1698bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:25724..27421- (Gracilaria caudata M_176_S67 male)
ATGGCGCTTCTGTTTGCCCGGAGTGTTTCGGTTCCGCGCTTAACAGGGAC
GACGCTCGCAGCGTTTCGCAAATCGTTATGCCGTCGATGGCGCCTACTAC
GTGTAGCTCCCGTGACACATCGACATTTTCGTGTTGCGCAGCTGAGCATT
CGTCCCACTTCTACGCGACCAGGCTCGCCAGAGGTTAATATCTACACTTC
CCCGCTCAGCTCTCCAAATGCTAACTTCCAGGAAGATACCATCTTCGCCT
TGTCCTCTGGCGCAGGTGTCACCGCAGGTGTCGCCGTCATTCGAATATCC
GGGCCGCACGCCACCTCTTGCCTTAGGAGATTACTCCGTTCTCAGTCACC
CTCAGCTATTCCACCACCGCGATATGCATCGTTGCGGAGGTTATATCATC
CTTGGTCAGATGAACTGCTTGACGAAGCACTCGTTCTTCAATTCCCAGGT
CCAAAGAGCTTCACTGGGGAGGATGTCGTCGAGTTGCACGTTCATGGTTC
TAGAGCAGTCATCAGCGCAGTAATTGACGCCATTGCCGATTGCGCTTCTC
CCGAACTTGTAGTGCGACCCGCTGAGCGGGGTGAGTTTACCCGACGAGCC
TTTGAAAACGGGCAAATGGACCTCACAGCGGTTGAGGGACTGGCAGACCT
CATAGCGGCCGAAACTACGATGCAGCGAAAACAGGCTCTGCGTCAATTCA
CCGGTCATCTGGAACAAACACTTGAAGCATGGCGCACCGATATCAAAACT
TGCCTGGCTCATGTTGAAGCAGTTATCGACTTTGGCGACGACGTAGATGA
CCAAGTTTTCGAACAAATCATTCCCCGCATACGCGAGCTGCGCGATCGAA
TTCAAGCTCGTCTTCGTGACGCTCACAGAGGAGAGATCATTCGTGGGGGC
GCTCGAGTTGCCATCGTTGGACACCCAAACGCTGGAAAAAGTACGTTGCT
TAATGCGCTTGCAAAGCGACCAGCAGCGATCGTTTCCCCTCACGCAGGTA
CTACTCGGGATGTTGTTGAAGTTCAGATGGATCTTAATGGACTTGCCGTT
ACCGTGAGTGACACTGCAGGACTGCGAGAAAGTACAAGTGATCCCATTGA
AATTGAAGGCATGCGAAGAGCTCGCGACGCTGCTTCTAGAGCAGATGTTA
CGGTTCTGGTCCACGATGTCACAGCAGGAGGCATAGATGCAGCAATACGG
ACGCTATCACGTCGGCTACCGCCGACCGATTCCGACCCAGATTCACACAA
ATCTGGAAAACACTTGATCTGTGTTTTGAACAAGGTAGATTTAGTGGACA
AAGCCGAACGCGACCCTCTGGACGACGCTTGTAAAGTATTCAGAACCAGC
TTACTGCAAAATGAAGGACTCACGGAACTAGTGGATCATTTGGAATCGAC
AATACGAAGAATCTGTGAGGGAAGTAGCACAAACGATTCTGCTGGGGAAG
AAGGGTCCGCGAACAGTATGCCTATTATTACCAGAGCAAGACATAGACAT
CACATGAAGAACGCTGTTTCAGCACTGGACTCTTTTTTGGAAGGCAGATC
TGGTTCGGACCCGTCACTTTATCTGCCCATGGATCTTGCAGCTGAAGACC
TTCGTATCGCCGCCAAGGAACTTGGAGCCATAACCGGAAAAATTGATTGC
GAAGAAGTTCTGGATGTGATCTTCAAAGAATTTTGCATAGGGAAGTGA