Gcaud7629.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7629.t1
Unique Name	Gcaud7629.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	524

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_534_length_22701_cov_4.725210	contig	NODE_534_length_22701_cov_4.725210:17417..18988 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7629	Gcaud7629	Gracilaria caudata M_176_S67 male	gene	NODE_534_length_22701_cov_4.725210 17417..18988 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7629.t1.start1	Gcaud7629.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_534_length_22701_cov_4.725210 17417..17419 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7629.t1.CDS1	Gcaud7629.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_534_length_22701_cov_4.725210 17417..18988 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7629.t1.exon1	Gcaud7629.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_534_length_22701_cov_4.725210 17417..18988 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7629.t1.stop1	Gcaud7629.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_534_length_22701_cov_4.725210 18986..18988 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7629.t1	Gcaud7629.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_534_length_22701_cov_4.725210 17417..18988 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_534_length_22701_cov_4.725210:17417..18988+
coding sequence from alignment at NODE_534_length_22701_cov_4.725210:17417..18988+

mRNA sequence

>Gcaud7629.t1 ID=Gcaud7629.t1|Name=Gcaud7629.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=524bp
MVERGGRRGNRWLEMIHTREVTSLAKRHDISLDDNLIRFLEEYSEVVLHV
TAKQKERKTNQSVLQQELEDVNRVVQDEVNAIREALFPNNEEARHYFFAV
QHQETYLPIVHLAIRGLPELLVHVTRTYATRKKGTSFGLLSKSTGGALWG
ATARAANYLRRRCRDQHWDLSVSEVVNLWYQQALEIPPEERMRPERSPSS
VAKRHRSIRRRARLQAEIQASMTTTQRDGKKRKVRIDAVERELADVPNRS
PTKKRRRTEAVEPSEMREASETVPENGPYEDAFRKDKTVKPGVAANQEVE
ANVAKHHDYVATSATTVEKHSFGRKDNKIERGELELRYETLRGKREEVPK
KGETEAETKACQHERTLRTRVDKRNDVRTKRTRKLVASAFLTSSSQARNR
GQDGDFKQVEIDEGFDTIGGMGDYDSEESDNESGDHNGEHALPVQQIRFE
QVHTDSVDKTGNSDNEGGIVEVGKTTEMDRLHSASKEQKFASYRFADALS
AVNLAGNDEGANHVKREDEEHVM*

spliced messenger RNA

>Gcaud7629.t1 ID=Gcaud7629.t1|Name=Gcaud7629.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:17417..18988+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAGCGAGGCGGCCGAAGAGGAAATCGATGGCTAGAAATGATTCA
CACCAGGGAGGTAACCTCTCTCGCAAAACGTCATGATATCTCTCTCGATG
ACAATCTGATACGTTTCTTGGAAGAGTATTCAGAAGTTGTACTTCATGTG
ACAGCAAAGCAGAAAGAAAGGAAAACAAATCAATCCGTACTGCAACAGGA
GCTTGAGGATGTTAACAGAGTGGTTCAGGACGAAGTGAACGCCATCCGTG
AAGCGCTGTTCCCGAACAATGAAGAAGCCAGGCATTACTTCTTTGCGGTA
CAGCACCAGGAGACCTATTTGCCCATCGTACATTTGGCAATCAGAGGCCT
TCCAGAACTCCTCGTGCACGTCACGCGTACTTATGCAACGAGGAAAAAAG
GGACATCGTTCGGACTGCTATCGAAAAGTACTGGGGGTGCGCTTTGGGGG
GCCACTGCTCGTGCGGCAAACTACCTTCGTCGCAGATGTCGTGATCAGCA
TTGGGATTTATCGGTTTCAGAAGTTGTGAATCTATGGTATCAACAGGCGT
TAGAGATTCCACCAGAAGAGCGTATGCGTCCCGAAAGAAGCCCATCTTCC
GTGGCAAAGCGTCATAGGTCTATTCGAAGACGAGCACGTCTTCAAGCTGA
AATACAAGCCTCTATGACGACCACTCAAAGAGATGGTAAGAAACGAAAGG
TCAGAATAGATGCGGTTGAAAGGGAACTTGCAGATGTCCCGAACCGCTCG
CCAACTAAAAAACGAAGGCGGACAGAGGCAGTTGAACCTTCTGAAATGCG
AGAGGCTTCAGAAACTGTGCCGGAGAATGGGCCGTACGAAGATGCTTTCA
GAAAGGACAAAACTGTGAAGCCGGGCGTTGCTGCAAACCAAGAAGTTGAA
GCGAACGTTGCGAAGCATCATGATTACGTGGCTACGAGTGCAACGACCGT
TGAAAAGCATTCATTTGGGCGAAAGGATAACAAGATTGAAAGGGGTGAAT
TGGAATTGCGCTATGAGACATTGAGGGGAAAACGTGAGGAGGTGCCCAAA
AAGGGTGAGACAGAAGCTGAAACGAAAGCTTGTCAGCATGAAAGGACTCT
AAGGACAAGAGTTGACAAACGAAATGATGTACGGACAAAAAGAACAAGGA
AGTTGGTGGCATCCGCATTTCTCACATCAAGTTCACAAGCAAGAAATCGT
GGGCAGGATGGAGATTTTAAGCAAGTGGAAATTGATGAAGGGTTCGATAC
AATTGGTGGGATGGGTGATTACGATTCAGAGGAGTCGGACAATGAAAGTG
GCGATCATAACGGCGAACATGCATTACCTGTACAACAAATTCGGTTTGAA
CAGGTACACACTGATAGTGTGGACAAAACTGGCAATAGCGACAATGAAGG
AGGAATCGTAGAGGTGGGCAAAACGACGGAGATGGACAGACTGCATTCTG
CGTCGAAAGAACAAAAGTTTGCGTCTTATCGATTTGCAGACGCTCTGAGT
GCCGTGAACCTGGCCGGAAATGATGAGGGTGCGAATCACGTAAAACGCGA
AGACGAGGAGCACGTGATGTAA

protein sequence of Gcaud7629.t1

>Gcaud7629.t1 ID=Gcaud7629.t1|Name=Gcaud7629.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=524bp
MVERGGRRGNRWLEMIHTREVTSLAKRHDISLDDNLIRFLEEYSEVVLHV
TAKQKERKTNQSVLQQELEDVNRVVQDEVNAIREALFPNNEEARHYFFAV
QHQETYLPIVHLAIRGLPELLVHVTRTYATRKKGTSFGLLSKSTGGALWG
ATARAANYLRRRCRDQHWDLSVSEVVNLWYQQALEIPPEERMRPERSPSS
VAKRHRSIRRRARLQAEIQASMTTTQRDGKKRKVRIDAVERELADVPNRS
PTKKRRRTEAVEPSEMREASETVPENGPYEDAFRKDKTVKPGVAANQEVE
ANVAKHHDYVATSATTVEKHSFGRKDNKIERGELELRYETLRGKREEVPK
KGETEAETKACQHERTLRTRVDKRNDVRTKRTRKLVASAFLTSSSQARNR
GQDGDFKQVEIDEGFDTIGGMGDYDSEESDNESGDHNGEHALPVQQIRFE
QVHTDSVDKTGNSDNEGGIVEVGKTTEMDRLHSASKEQKFASYRFADALS
AVNLAGNDEGANHVKREDEEHVM*

mRNA from alignment at NODE_534_length_22701_cov_4.725210:17417..18988+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7629.t1 ID=Gcaud7629.t1|Name=Gcaud7629.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:17417..18988+ (Gracilaria caudata M_176_S67 male)
ATGGTTGAGCGAGGCGGCCGAAGAGGAAATCGATGGCTAGAAATGATTCA
CACCAGGGAGGTAACCTCTCTCGCAAAACGTCATGATATCTCTCTCGATG
ACAATCTGATACGTTTCTTGGAAGAGTATTCAGAAGTTGTACTTCATGTG
ACAGCAAAGCAGAAAGAAAGGAAAACAAATCAATCCGTACTGCAACAGGA
GCTTGAGGATGTTAACAGAGTGGTTCAGGACGAAGTGAACGCCATCCGTG
AAGCGCTGTTCCCGAACAATGAAGAAGCCAGGCATTACTTCTTTGCGGTA
CAGCACCAGGAGACCTATTTGCCCATCGTACATTTGGCAATCAGAGGCCT
TCCAGAACTCCTCGTGCACGTCACGCGTACTTATGCAACGAGGAAAAAAG
GGACATCGTTCGGACTGCTATCGAAAAGTACTGGGGGTGCGCTTTGGGGG
GCCACTGCTCGTGCGGCAAACTACCTTCGTCGCAGATGTCGTGATCAGCA
TTGGGATTTATCGGTTTCAGAAGTTGTGAATCTATGGTATCAACAGGCGT
TAGAGATTCCACCAGAAGAGCGTATGCGTCCCGAAAGAAGCCCATCTTCC
GTGGCAAAGCGTCATAGGTCTATTCGAAGACGAGCACGTCTTCAAGCTGA
AATACAAGCCTCTATGACGACCACTCAAAGAGATGGTAAGAAACGAAAGG
TCAGAATAGATGCGGTTGAAAGGGAACTTGCAGATGTCCCGAACCGCTCG
CCAACTAAAAAACGAAGGCGGACAGAGGCAGTTGAACCTTCTGAAATGCG
AGAGGCTTCAGAAACTGTGCCGGAGAATGGGCCGTACGAAGATGCTTTCA
GAAAGGACAAAACTGTGAAGCCGGGCGTTGCTGCAAACCAAGAAGTTGAA
GCGAACGTTGCGAAGCATCATGATTACGTGGCTACGAGTGCAACGACCGT
TGAAAAGCATTCATTTGGGCGAAAGGATAACAAGATTGAAAGGGGTGAAT
TGGAATTGCGCTATGAGACATTGAGGGGAAAACGTGAGGAGGTGCCCAAA
AAGGGTGAGACAGAAGCTGAAACGAAAGCTTGTCAGCATGAAAGGACTCT
AAGGACAAGAGTTGACAAACGAAATGATGTACGGACAAAAAGAACAAGGA
AGTTGGTGGCATCCGCATTTCTCACATCAAGTTCACAAGCAAGAAATCGT
GGGCAGGATGGAGATTTTAAGCAAGTGGAAATTGATGAAGGGTTCGATAC
AATTGGTGGGATGGGTGATTACGATTCAGAGGAGTCGGACAATGAAAGTG
GCGATCATAACGGCGAACATGCATTACCTGTACAACAAATTCGGTTTGAA
CAGGTACACACTGATAGTGTGGACAAAACTGGCAATAGCGACAATGAAGG
AGGAATCGTAGAGGTGGGCAAAACGACGGAGATGGACAGACTGCATTCTG
CGTCGAAAGAACAAAAGTTTGCGTCTTATCGATTTGCAGACGCTCTGAGT
GCCGTGAACCTGGCCGGAAATGATGAGGGTGCGAATCACGTAAAACGCGA
AGACGAGGAGCACGTGATGTAA

Coding sequence (CDS) from alignment at NODE_534_length_22701_cov_4.725210:17417..18988+

>Gcaud7629.t1 ID=Gcaud7629.t1|Name=Gcaud7629.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1572bp|location=Sequence derived from alignment at NODE_534_length_22701_cov_4.725210:17417..18988+ (Gracilaria caudata M_176_S67 male)
ATGGTTGAGCGAGGCGGCCGAAGAGGAAATCGATGGCTAGAAATGATTCA
CACCAGGGAGGTAACCTCTCTCGCAAAACGTCATGATATCTCTCTCGATG
ACAATCTGATACGTTTCTTGGAAGAGTATTCAGAAGTTGTACTTCATGTG
ACAGCAAAGCAGAAAGAAAGGAAAACAAATCAATCCGTACTGCAACAGGA
GCTTGAGGATGTTAACAGAGTGGTTCAGGACGAAGTGAACGCCATCCGTG
AAGCGCTGTTCCCGAACAATGAAGAAGCCAGGCATTACTTCTTTGCGGTA
CAGCACCAGGAGACCTATTTGCCCATCGTACATTTGGCAATCAGAGGCCT
TCCAGAACTCCTCGTGCACGTCACGCGTACTTATGCAACGAGGAAAAAAG
GGACATCGTTCGGACTGCTATCGAAAAGTACTGGGGGTGCGCTTTGGGGG
GCCACTGCTCGTGCGGCAAACTACCTTCGTCGCAGATGTCGTGATCAGCA
TTGGGATTTATCGGTTTCAGAAGTTGTGAATCTATGGTATCAACAGGCGT
TAGAGATTCCACCAGAAGAGCGTATGCGTCCCGAAAGAAGCCCATCTTCC
GTGGCAAAGCGTCATAGGTCTATTCGAAGACGAGCACGTCTTCAAGCTGA
AATACAAGCCTCTATGACGACCACTCAAAGAGATGGTAAGAAACGAAAGG
TCAGAATAGATGCGGTTGAAAGGGAACTTGCAGATGTCCCGAACCGCTCG
CCAACTAAAAAACGAAGGCGGACAGAGGCAGTTGAACCTTCTGAAATGCG
AGAGGCTTCAGAAACTGTGCCGGAGAATGGGCCGTACGAAGATGCTTTCA
GAAAGGACAAAACTGTGAAGCCGGGCGTTGCTGCAAACCAAGAAGTTGAA
GCGAACGTTGCGAAGCATCATGATTACGTGGCTACGAGTGCAACGACCGT
TGAAAAGCATTCATTTGGGCGAAAGGATAACAAGATTGAAAGGGGTGAAT
TGGAATTGCGCTATGAGACATTGAGGGGAAAACGTGAGGAGGTGCCCAAA
AAGGGTGAGACAGAAGCTGAAACGAAAGCTTGTCAGCATGAAAGGACTCT
AAGGACAAGAGTTGACAAACGAAATGATGTACGGACAAAAAGAACAAGGA
AGTTGGTGGCATCCGCATTTCTCACATCAAGTTCACAAGCAAGAAATCGT
GGGCAGGATGGAGATTTTAAGCAAGTGGAAATTGATGAAGGGTTCGATAC
AATTGGTGGGATGGGTGATTACGATTCAGAGGAGTCGGACAATGAAAGTG
GCGATCATAACGGCGAACATGCATTACCTGTACAACAAATTCGGTTTGAA
CAGGTACACACTGATAGTGTGGACAAAACTGGCAATAGCGACAATGAAGG
AGGAATCGTAGAGGTGGGCAAAACGACGGAGATGGACAGACTGCATTCTG
CGTCGAAAGAACAAAAGTTTGCGTCTTATCGATTTGCAGACGCTCTGAGT
GCCGTGAACCTGGCCGGAAATGATGAGGGTGCGAATCACGTAAAACGCGA
AGACGAGGAGCACGTGATGTAA