Gcaud7564.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7564.t1
Unique NameGcaud7564.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1858_length_8045_cov_4.168972contigNODE_1858_length_8045_cov_4.168972:3267..3941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9733.XP_004285436.1
Preferred nameUBE2T
PFAMsUQ_con
Max annot lvl33208|Metazoa
KEGG koko:K13960
KEGG Pathwayko03460,map03460
GOsGO:0000209,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0035519,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044314,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0051865,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070013,GO:0070534,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0085020,GO:0090304,GO:0140096,GO:1901360,GO:1901564
Evalue4.82e-56
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota,39TZT@33154|Opisthokonta,3BG3R@33208|Metazoa,3CZZU@33213|Bilateria,48AT7@7711|Chordata,492K2@7742|Vertebrata,3J745@40674|Mammalia,4IVK5@91561|Cetartiodactyla
EC2.3.2.23
Descriptionubiquitin-conjugating enzyme
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7564Gcaud7564Gracilaria caudata M_176_S67 malegeneNODE_1858_length_8045_cov_4.168972 3267..3941 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7564.t1.stop1Gcaud7564.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1858_length_8045_cov_4.168972 3267..3269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7564.t1.CDS1Gcaud7564.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1858_length_8045_cov_4.168972 3267..3941 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7564.t1.exon1Gcaud7564.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1858_length_8045_cov_4.168972 3267..3941 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7564.t1.start1Gcaud7564.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1858_length_8045_cov_4.168972 3939..3941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7564.t1Gcaud7564.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1858_length_8045_cov_4.168972 3267..3941 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7564.t1 ID=Gcaud7564.t1|Name=Gcaud7564.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp
MNSVANKRITRELQLLARGSAAPGIAAWARDEGTRLDVLDAEITGASDTP
YERGVFRLELHIPREYPFKPPRVRFITKIYHPNVDSDGRICLDSLNMPPK
GVWKPSLNVPTILTSIQALMSTPNADDGLMADITHEYRTNPALFRRKAVQ
WTQLYAIPSKTSQQRTETAPPEQHTSAEHRSQPTSSPQRRDQRVPSQART
EPSTDAVAPPAPSLEPRLKKARTS*
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spliced messenger RNA

>Gcaud7564.t1 ID=Gcaud7564.t1|Name=Gcaud7564.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_1858_length_8045_cov_4.168972:3267..3941- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCGTGGCCAACAAACGAATCACGCGCGAGCTTCAACTGCTTGC
TCGCGGCAGCGCCGCGCCAGGCATTGCGGCGTGGGCGCGTGACGAAGGCA
CGCGACTGGACGTGCTCGATGCCGAAATCACAGGCGCCTCCGACACGCCC
TACGAACGCGGCGTCTTTCGTCTCGAGTTGCACATTCCGCGAGAGTATCC
GTTCAAGCCGCCTCGCGTGCGCTTCATCACCAAGATCTATCACCCTAACG
TCGACTCCGACGGTCGAATATGTCTTGACAGCCTTAACATGCCTCCAAAG
GGCGTGTGGAAGCCCTCGCTCAACGTGCCTACCATTCTCACCAGCATTCA
GGCGCTCATGTCCACCCCGAACGCTGACGACGGCCTCATGGCTGATATCA
CACATGAGTACAGAACCAATCCTGCTCTGTTTCGACGCAAAGCTGTGCAA
TGGACTCAGCTGTATGCCATACCGTCCAAAACCTCTCAGCAGCGGACAGA
AACCGCTCCTCCCGAGCAACACACCAGTGCCGAACACCGCTCGCAACCTA
CTTCATCCCCGCAACGCCGAGATCAACGTGTGCCATCTCAGGCGCGCACC
GAACCCAGCACCGATGCTGTTGCGCCTCCGGCGCCGTCTCTGGAACCGCG
CTTGAAGAAGGCAAGGACCAGCTGA
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protein sequence of Gcaud7564.t1

>Gcaud7564.t1 ID=Gcaud7564.t1|Name=Gcaud7564.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MNSVANKRITRELQLLARGSAAPGIAAWARDEGTRLDVLDAEITGASDTP
YERGVFRLELHIPREYPFKPPRVRFITKIYHPNVDSDGRICLDSLNMPPK
GVWKPSLNVPTILTSIQALMSTPNADDGLMADITHEYRTNPALFRRKAVQ
WTQLYAIPSKTSQQRTETAPPEQHTSAEHRSQPTSSPQRRDQRVPSQART
EPSTDAVAPPAPSLEPRLKKARTS*
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mRNA from alignment at NODE_1858_length_8045_cov_4.168972:3267..3941-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7564.t1 ID=Gcaud7564.t1|Name=Gcaud7564.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_1858_length_8045_cov_4.168972:3267..3941- (Gracilaria caudata M_176_S67 male)
ATGAACTCCGTGGCCAACAAACGAATCACGCGCGAGCTTCAACTGCTTGC
TCGCGGCAGCGCCGCGCCAGGCATTGCGGCGTGGGCGCGTGACGAAGGCA
CGCGACTGGACGTGCTCGATGCCGAAATCACAGGCGCCTCCGACACGCCC
TACGAACGCGGCGTCTTTCGTCTCGAGTTGCACATTCCGCGAGAGTATCC
GTTCAAGCCGCCTCGCGTGCGCTTCATCACCAAGATCTATCACCCTAACG
TCGACTCCGACGGTCGAATATGTCTTGACAGCCTTAACATGCCTCCAAAG
GGCGTGTGGAAGCCCTCGCTCAACGTGCCTACCATTCTCACCAGCATTCA
GGCGCTCATGTCCACCCCGAACGCTGACGACGGCCTCATGGCTGATATCA
CACATGAGTACAGAACCAATCCTGCTCTGTTTCGACGCAAAGCTGTGCAA
TGGACTCAGCTGTATGCCATACCGTCCAAAACCTCTCAGCAGCGGACAGA
AACCGCTCCTCCCGAGCAACACACCAGTGCCGAACACCGCTCGCAACCTA
CTTCATCCCCGCAACGCCGAGATCAACGTGTGCCATCTCAGGCGCGCACC
GAACCCAGCACCGATGCTGTTGCGCCTCCGGCGCCGTCTCTGGAACCGCG
CTTGAAGAAGGCAAGGACCAGCTGA
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Coding sequence (CDS) from alignment at NODE_1858_length_8045_cov_4.168972:3267..3941-

>Gcaud7564.t1 ID=Gcaud7564.t1|Name=Gcaud7564.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=675bp|location=Sequence derived from alignment at NODE_1858_length_8045_cov_4.168972:3267..3941- (Gracilaria caudata M_176_S67 male)
ATGAACTCCGTGGCCAACAAACGAATCACGCGCGAGCTTCAACTGCTTGC
TCGCGGCAGCGCCGCGCCAGGCATTGCGGCGTGGGCGCGTGACGAAGGCA
CGCGACTGGACGTGCTCGATGCCGAAATCACAGGCGCCTCCGACACGCCC
TACGAACGCGGCGTCTTTCGTCTCGAGTTGCACATTCCGCGAGAGTATCC
GTTCAAGCCGCCTCGCGTGCGCTTCATCACCAAGATCTATCACCCTAACG
TCGACTCCGACGGTCGAATATGTCTTGACAGCCTTAACATGCCTCCAAAG
GGCGTGTGGAAGCCCTCGCTCAACGTGCCTACCATTCTCACCAGCATTCA
GGCGCTCATGTCCACCCCGAACGCTGACGACGGCCTCATGGCTGATATCA
CACATGAGTACAGAACCAATCCTGCTCTGTTTCGACGCAAAGCTGTGCAA
TGGACTCAGCTGTATGCCATACCGTCCAAAACCTCTCAGCAGCGGACAGA
AACCGCTCCTCCCGAGCAACACACCAGTGCCGAACACCGCTCGCAACCTA
CTTCATCCCCGCAACGCCGAGATCAACGTGTGCCATCTCAGGCGCGCACC
GAACCCAGCACCGATGCTGTTGCGCCTCCGGCGCCGTCTCTGGAACCGCG
CTTGAAGAAGGCAAGGACCAGCTGA
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