Gcaud7415.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7415.t1
Unique Name	Gcaud7415.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_10_length_87931_cov_4.732901	contig	NODE_10_length_87931_cov_4.732901:11659..13260 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7415	Gcaud7415	Gracilaria caudata M_176_S67 male	gene	NODE_10_length_87931_cov_4.732901 11659..13260 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7415.t1.start1	Gcaud7415.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_10_length_87931_cov_4.732901 11659..11661 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7415.t1.CDS1	Gcaud7415.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 11659..13260 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7415.t1.exon1	Gcaud7415.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 11659..13260 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7415.t1.stop1	Gcaud7415.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_10_length_87931_cov_4.732901 13258..13260 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7415.t1	Gcaud7415.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_10_length_87931_cov_4.732901 11659..13260 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_10_length_87931_cov_4.732901:11659..13260+
coding sequence from alignment at NODE_10_length_87931_cov_4.732901:11659..13260+

mRNA sequence

>Gcaud7415.t1 ID=Gcaud7415.t1|Name=Gcaud7415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp
MRAPSPFSWRRHRSSQPADAQSFSSESSSIPYHATPTAQLSTPTASTRDP
PSTPTRSLSQPSTSRLPISRVLRRPVHPDSADVTRNSTNSRHSDVFPPQR
LHAFEPYHPLSPPDSRRVSSAVTVTPPASFDVTSPPSPPSAPLPMHPWRK
GPAFRRKHNAHTKAAHPAPADPVFGVGQQKDDRPLREDGEQVLVKFLRST
LGPKAQGIAVRLVNKTPLPSQSAFTYVITQGSEDEDVDMLRAQLMSGRLL
VVGMRYAATAWANLLLGDRFFVANNRQRHELVYRRSTCTCIICKVRATER
PRSIDQADPSGMSDDVSIMSTPAPLARTPSHSAMANFVVRFSLPDKTALS
RIGASSSFRELEIGTVVRLNYRASAKLKLTDDVKELLGHLAYTGPISHED
MYRKVTTIGVHYYLYNKGKKERKVYIQGELVRLPINVGIIKLGTQPMYMP
ELGATFCLHRKQIMSIYVGEIVLEGNSVGSFIKTGIYYYIGFGEEKGVCP
VYPNKTLGKARILGINELLLHHHMVDDLEVRCV*

spliced messenger RNA

>Gcaud7415.t1 ID=Gcaud7415.t1|Name=Gcaud7415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:11659..13260+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGcgccgtcgccgttctcgtggcggcgccaccgctcgtcgcagcc
cgccgatgcgcagtcCTTTTCGTCAGAGTCCTCATCCATCCCGTACCATG
CGACGCCAACTGCGCAGCTCTCGACACCTACCGCCTCCACCAGAGATCCC
CCCTCCACCCCCACCCGCTCCCTTTCGCAGCCTTCCACATCCCGCCTGCC
CATTTCCCGCGTCCTGCGCCGCCCCGTCCATCCCGACTCCGCCGACGTCA
CGCGCAACTCTACCAACTCCAGGCATTCTGACGTCTTTCCCCCGCAGCGT
TTGCATGCGTTTGAGCCCTATCACCCGTTGTCGCCGCCCGACTCACGTCG
CGTTTCTAGTGCCGTCACTGTCACGCCCCCGGCTTCTTTTGACGTTACCT
CCCCGCCTTCGCCGCCTTCCGCACCGCTTCCGATGCATCCATGGCGCAAG
GGACCAGCTTTCCGTCGAAAGCACAACGCGCACACAAAAGCCGCTCACCC
CGCTCCTGCAGACCCGGTTTTCGGAGTTGGCCAGCAGAAGGACGATCGTC
CACTTCGCGAGGATGGTGAGCAGGTGCTCGTCAAGTTCCTCAGGTCTACA
TTAGGGCCAAAGGCGCAGGGAATTGCAGTCAGGCTCGTCAACAAGACACC
GCTTCCCTCCCAGTCTGCATTTACCTATGTCATCACCCAGGGTTCCGAAG
ATGAAGACGTTGACATGCTGCGCGCCCAGCTCATGTCTGGAAGACTCTTG
GTGGTGGGAATGCGGTACGCCGCAACTGCCTGGGCCAATCTCTTGCTCGG
TGATAGGTTTTTTGTTGCCAACAATCGTCAGAGACATGAGCTGGTGTACC
GCCGTTCCACGTGCACCTGTATCATATGTAAAGTACGAGCAACTGAAAGG
CCCCGAAGCATCGATCAAGCGGATCCTTCTGGTATGTCCGACGACGTGTC
CATCATGAGTACGCCCGCACCCCTCGCAAGAACACCTAGTCATTCCGCCA
TGGCCAATTTCGTCGTTCGCTTCAGCCTCCCAGACAAAACGGCCCTCAGT
CGTATCGGGGCGTCGTCGTCATTCAGGGAATTGGAAATTGGCACTGTTGT
TCGGTTAAACTATCGAGCCTCAGCGAAGCTCAAGCTTACTGACGATGTCA
AAGAGCTCCTCGGACATCTTGCGTACACTGGACCTATCTCTCACGAAGAT
ATGTACAGAAAAGTTACCACCATTGGCGTCCATTATTATTTGTACAACAA
GGGTAAAAAGGAGCGCAAGGTATACATTCAGGGTGAGCTCGTACGTCTGC
CAATCAATGTTGGCATCATCAAGCTCGGCACCCAGCCAATGTACATGCCG
GAACTTGGTGCCACTTTCTGCCTGCATCGAAAACAGATAATGTCAATATA
CGTTGGAGAGATTGTCTTGGAGGGCAATTCGGTTGGTTCTTTCATCAAGA
CTGGAATTTACTATTATATTGGCTTTGGCGAGGAGAAAGGTGTTTGCCCA
GTATATCCAAATAAGACTCTTGGTAAGGCCAGAATATTGGGGATCAACGA
ATTGCTCCTGCATCATCACATGGTCGATGATCTAGAAGTCAGGTGCGTAT
AA

protein sequence of Gcaud7415.t1

>Gcaud7415.t1 ID=Gcaud7415.t1|Name=Gcaud7415.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=534bp
MRAPSPFSWRRHRSSQPADAQSFSSESSSIPYHATPTAQLSTPTASTRDP
PSTPTRSLSQPSTSRLPISRVLRRPVHPDSADVTRNSTNSRHSDVFPPQR
LHAFEPYHPLSPPDSRRVSSAVTVTPPASFDVTSPPSPPSAPLPMHPWRK
GPAFRRKHNAHTKAAHPAPADPVFGVGQQKDDRPLREDGEQVLVKFLRST
LGPKAQGIAVRLVNKTPLPSQSAFTYVITQGSEDEDVDMLRAQLMSGRLL
VVGMRYAATAWANLLLGDRFFVANNRQRHELVYRRSTCTCIICKVRATER
PRSIDQADPSGMSDDVSIMSTPAPLARTPSHSAMANFVVRFSLPDKTALS
RIGASSSFRELEIGTVVRLNYRASAKLKLTDDVKELLGHLAYTGPISHED
MYRKVTTIGVHYYLYNKGKKERKVYIQGELVRLPINVGIIKLGTQPMYMP
ELGATFCLHRKQIMSIYVGEIVLEGNSVGSFIKTGIYYYIGFGEEKGVCP
VYPNKTLGKARILGINELLLHHHMVDDLEVRCV*

mRNA from alignment at NODE_10_length_87931_cov_4.732901:11659..13260+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7415.t1 ID=Gcaud7415.t1|Name=Gcaud7415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:11659..13260+ (Gracilaria caudata M_176_S67 male)
ATGCGAGcgccgtcgccgttctcgtggcggcgccaccgctcgtcgcagcc
cgccgatgcgcagtcCTTTTCGTCAGAGTCCTCATCCATCCCGTACCATG
CGACGCCAACTGCGCAGCTCTCGACACCTACCGCCTCCACCAGAGATCCC
CCCTCCACCCCCACCCGCTCCCTTTCGCAGCCTTCCACATCCCGCCTGCC
CATTTCCCGCGTCCTGCGCCGCCCCGTCCATCCCGACTCCGCCGACGTCA
CGCGCAACTCTACCAACTCCAGGCATTCTGACGTCTTTCCCCCGCAGCGT
TTGCATGCGTTTGAGCCCTATCACCCGTTGTCGCCGCCCGACTCACGTCG
CGTTTCTAGTGCCGTCACTGTCACGCCCCCGGCTTCTTTTGACGTTACCT
CCCCGCCTTCGCCGCCTTCCGCACCGCTTCCGATGCATCCATGGCGCAAG
GGACCAGCTTTCCGTCGAAAGCACAACGCGCACACAAAAGCCGCTCACCC
CGCTCCTGCAGACCCGGTTTTCGGAGTTGGCCAGCAGAAGGACGATCGTC
CACTTCGCGAGGATGGTGAGCAGGTGCTCGTCAAGTTCCTCAGGTCTACA
TTAGGGCCAAAGGCGCAGGGAATTGCAGTCAGGCTCGTCAACAAGACACC
GCTTCCCTCCCAGTCTGCATTTACCTATGTCATCACCCAGGGTTCCGAAG
ATGAAGACGTTGACATGCTGCGCGCCCAGCTCATGTCTGGAAGACTCTTG
GTGGTGGGAATGCGGTACGCCGCAACTGCCTGGGCCAATCTCTTGCTCGG
TGATAGGTTTTTTGTTGCCAACAATCGTCAGAGACATGAGCTGGTGTACC
GCCGTTCCACGTGCACCTGTATCATATGTAAAGTACGAGCAACTGAAAGG
CCCCGAAGCATCGATCAAGCGGATCCTTCTGGTATGTCCGACGACGTGTC
CATCATGAGTACGCCCGCACCCCTCGCAAGAACACCTAGTCATTCCGCCA
TGGCCAATTTCGTCGTTCGCTTCAGCCTCCCAGACAAAACGGCCCTCAGT
CGTATCGGGGCGTCGTCGTCATTCAGGGAATTGGAAATTGGCACTGTTGT
TCGGTTAAACTATCGAGCCTCAGCGAAGCTCAAGCTTACTGACGATGTCA
AAGAGCTCCTCGGACATCTTGCGTACACTGGACCTATCTCTCACGAAGAT
ATGTACAGAAAAGTTACCACCATTGGCGTCCATTATTATTTGTACAACAA
GGGTAAAAAGGAGCGCAAGGTATACATTCAGGGTGAGCTCGTACGTCTGC
CAATCAATGTTGGCATCATCAAGCTCGGCACCCAGCCAATGTACATGCCG
GAACTTGGTGCCACTTTCTGCCTGCATCGAAAACAGATAATGTCAATATA
CGTTGGAGAGATTGTCTTGGAGGGCAATTCGGTTGGTTCTTTCATCAAGA
CTGGAATTTACTATTATATTGGCTTTGGCGAGGAGAAAGGTGTTTGCCCA
GTATATCCAAATAAGACTCTTGGTAAGGCCAGAATATTGGGGATCAACGA
ATTGCTCCTGCATCATCACATGGTCGATGATCTAGAAGTCAGGTGCGTAT
AA

Coding sequence (CDS) from alignment at NODE_10_length_87931_cov_4.732901:11659..13260+

>Gcaud7415.t1 ID=Gcaud7415.t1|Name=Gcaud7415.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1602bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:11659..13260+ (Gracilaria caudata M_176_S67 male)
ATGCGAGcgccgtcgccgttctcgtggcggcgccaccgctcgtcgcagcc
cgccgatgcgcagtcCTTTTCGTCAGAGTCCTCATCCATCCCGTACCATG
CGACGCCAACTGCGCAGCTCTCGACACCTACCGCCTCCACCAGAGATCCC
CCCTCCACCCCCACCCGCTCCCTTTCGCAGCCTTCCACATCCCGCCTGCC
CATTTCCCGCGTCCTGCGCCGCCCCGTCCATCCCGACTCCGCCGACGTCA
CGCGCAACTCTACCAACTCCAGGCATTCTGACGTCTTTCCCCCGCAGCGT
TTGCATGCGTTTGAGCCCTATCACCCGTTGTCGCCGCCCGACTCACGTCG
CGTTTCTAGTGCCGTCACTGTCACGCCCCCGGCTTCTTTTGACGTTACCT
CCCCGCCTTCGCCGCCTTCCGCACCGCTTCCGATGCATCCATGGCGCAAG
GGACCAGCTTTCCGTCGAAAGCACAACGCGCACACAAAAGCCGCTCACCC
CGCTCCTGCAGACCCGGTTTTCGGAGTTGGCCAGCAGAAGGACGATCGTC
CACTTCGCGAGGATGGTGAGCAGGTGCTCGTCAAGTTCCTCAGGTCTACA
TTAGGGCCAAAGGCGCAGGGAATTGCAGTCAGGCTCGTCAACAAGACACC
GCTTCCCTCCCAGTCTGCATTTACCTATGTCATCACCCAGGGTTCCGAAG
ATGAAGACGTTGACATGCTGCGCGCCCAGCTCATGTCTGGAAGACTCTTG
GTGGTGGGAATGCGGTACGCCGCAACTGCCTGGGCCAATCTCTTGCTCGG
TGATAGGTTTTTTGTTGCCAACAATCGTCAGAGACATGAGCTGGTGTACC
GCCGTTCCACGTGCACCTGTATCATATGTAAAGTACGAGCAACTGAAAGG
CCCCGAAGCATCGATCAAGCGGATCCTTCTGGTATGTCCGACGACGTGTC
CATCATGAGTACGCCCGCACCCCTCGCAAGAACACCTAGTCATTCCGCCA
TGGCCAATTTCGTCGTTCGCTTCAGCCTCCCAGACAAAACGGCCCTCAGT
CGTATCGGGGCGTCGTCGTCATTCAGGGAATTGGAAATTGGCACTGTTGT
TCGGTTAAACTATCGAGCCTCAGCGAAGCTCAAGCTTACTGACGATGTCA
AAGAGCTCCTCGGACATCTTGCGTACACTGGACCTATCTCTCACGAAGAT
ATGTACAGAAAAGTTACCACCATTGGCGTCCATTATTATTTGTACAACAA
GGGTAAAAAGGAGCGCAAGGTATACATTCAGGGTGAGCTCGTACGTCTGC
CAATCAATGTTGGCATCATCAAGCTCGGCACCCAGCCAATGTACATGCCG
GAACTTGGTGCCACTTTCTGCCTGCATCGAAAACAGATAATGTCAATATA
CGTTGGAGAGATTGTCTTGGAGGGCAATTCGGTTGGTTCTTTCATCAAGA
CTGGAATTTACTATTATATTGGCTTTGGCGAGGAGAAAGGTGTTTGCCCA
GTATATCCAAATAAGACTCTTGGTAAGGCCAGAATATTGGGGATCAACGA
ATTGCTCCTGCATCATCACATGGTCGATGATCTAGAAGTCAGGTGCGTAT
AA