Gcaud7364.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7364.t1
Unique Name	Gcaud7364.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	741

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_85_length_54060_cov_4.846356	contig	NODE_85_length_54060_cov_4.846356:16397..18619 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7364	Gcaud7364	Gracilaria caudata M_176_S67 male	gene	NODE_85_length_54060_cov_4.846356 16397..18619 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7364.t1.start1	Gcaud7364.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_85_length_54060_cov_4.846356 16397..16399 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7364.t1.CDS1	Gcaud7364.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_85_length_54060_cov_4.846356 16397..18619 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7364.t1.exon1	Gcaud7364.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_85_length_54060_cov_4.846356 16397..18619 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7364.t1.stop1	Gcaud7364.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_85_length_54060_cov_4.846356 18617..18619 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7364.t1	Gcaud7364.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_85_length_54060_cov_4.846356 16397..18619 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_85_length_54060_cov_4.846356:16397..18619+
coding sequence from alignment at NODE_85_length_54060_cov_4.846356:16397..18619+

mRNA sequence

>Gcaud7364.t1 ID=Gcaud7364.t1|Name=Gcaud7364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=741bp
MRSRVSNMHHHARSVRPAASAPALSQALSSSTSLSSATVATASTVPRRPD
SAQARSLPREPAPESRLPSVDDSSTPRRLVTDTSQRAHFVRALLPPPSSH
MLHHNCASITQFLRPVTLPIDCVPDAADPSFKAHSSLLRKIALHHFELNR
YLFAYKPLARVHAVMAATLLSPAHIDSNTFPMSSLLRTAVMYLAGNSYRN
VYVMTYAAQLKSIHRSTPPAQGIMPSVLLKGHHLPKSELLALDFAQQMLS
DEYAVSEAISKRFIDMHANEVCAVDRYVAATCAYGAFLSTLTSPLDLELT
HAAIQYASTNLQGLPWKSSAAPLNVGFTDDDLGNFGSSAHHSTFGARVKP
MKERFSLHNNYHRHHQNGKSRPRAIRKVSHFLSHSIMAPKIIADVNRVTE
NWMSNAHVPSPGQLFETNDFISHIFGFEPFYFSTQAMAGEAMRRAFLYGC
TELLFGERDIPRRLKFILCYVLSSGKERRRIDTDHTKSFETQGLHNGRSI
TSVYKQRPYDALSIMSAHAAYLACKYGSCAAELVAATDVSRVRSAMERYQ
NRSDLNMHTRLVDFPLPKRDCAAILLAHALLRESPCISEAELLAFESSFG
SAKDADQASRNSRRAFLEVLGTACMWGSLERYATGVLAFDIDCTSNLVFA
MGRAEPTITEFCQSVEGKKIGLSLAVGDDGKLVRNRSDPKATRAQSLRSA
TRSKKRLHRKRTSSVLSSGLRVARMFSTDELRTKESPAVA*

spliced messenger RNA

>Gcaud7364.t1 ID=Gcaud7364.t1|Name=Gcaud7364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2223bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:16397..18619+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCGCGCGTGTCCAATATGCACCACCACGCGCGCTCCGTGCGTCC
CGCCGCCTCTGCGCCCGCGCTGTCGCAGGCGCTGTCCTCCTCCACGTCGC
TGTCCTCCGCCACCGTCGCCACTGCCTCCACGGTGCCGCGTCGTCCCGAC
TCCGCGCAGGCGCGCTCGCTGCCGAGAGAGCCGGCGCCGGAGTCGCGGCT
GCCGTCCGTGGATGACTCCTCGACGCCGCGTCGTCTCGTCACCGACACCT
CGCAACGCGCGCACTTTGTGCGCGCGTTGCTGCCGCCGCCGTCTTCGCAT
ATGCTGCATCACAACTGTGCGTCCATCACGCAGTTTTTGCGGCCGGTGAC
GCTTCCCATCGACTGTGTGCCGGACGCGGCTGATCCGTCGTTCAAGGCGC
ATTCTTCGCTGCTGCGCAAGATTGCGTTGCATCACTTTGAGCTCAACCGA
TACTTGTTTGCGTACAAGCCGTTGGCACGCGTGCATGCGGTGATGGCCGC
TACATTGCTTTCGCCGGCGCACATTGACTCCAATACGTTTCCGATGTCGT
CGCTGCTCCGCACCGCCGTCATGTACCTGGCGGGCAATTCGTATCGCAAT
GTGTACGTCATGACGTATGCCGCGCAGCTCAAGAGCATTCATCGTTCCAC
TCCGCCCGCGCAGGGGATCATGCCCTCCGTGCTGTTGAAGGGGCATCATC
TTCCCAAGTCTGAGCTGCTGGCGTTGGACTTTGCGCAGCAGATGCTCTCG
GATGAGTATGCAGTGTCAGAAGCAATAAGCAAACGTTTTATCGATATGCA
TGCCAACGAGGTGTGTGCGGTAGATCGATACGTTGCTGCCACTTGTGCGT
ACGGTGCCTTTCTGTCCACCCTTACTAGCCCTCTGGACCTCGAGCTTACG
CACGCCGCCATTCAGTACGCGTCCACCAACTTGCAGGGCCTTCCTTGGAA
GTCCAGCGCCGCGCCGTTGAACGTCGGTTTCACGGATGATGATTTGGGTA
ACTTCGGCTCCTCCGCTCATCATTCCACGTTCGGTGCCAGGGTCAAGCCC
ATGAAGGAGCGCTTCAGCCTGCATAACAACTACCATCGCCACCATCAAAA
CGGAAAGAGTCGGCCACGTGCCATCCGCAAGGTGTCCCATTTTCTCTCGC
ACTCTATCATGGCGCCGAAGATCATCGCCGACGTCAACCGAGTCACCGAG
AACTGGATGAGCAATGCTCACGTACCGTCCCCCGGTCAGCTGTTTGAAAC
CAACGACTTTATCTCTCATATATTTGGCTTTGAGCCCTTTTACTTTTCGA
CACAAGCAATGGCTGGAGAGGCCATGAGACGCGCTTTTCTATACGGCTGT
ACCGAGCTCTTGTTCGGCGAACGCGATATTCCGAGACGTCTCAAGTTTAT
TCTGTGCTACGTTCTGTCCTCTGGTAAGGAGCGTCGTAGAATAGATACCG
ATCATACAAAGAGCTTCGAAACGCAGGGATTGCACAATGGTCGTTCTATC
ACCTCCGTGTACAAGCAGAGACCGTATGATGCATTGAGTATCATGTCTGC
GCATGCTGCGTATCTCGCCTGCAAATACGGCTCGTGCGCGGCTGAACTGG
TGGCTGCCACGGATGTCAGTCGAGTGCGGAGCGCGATGGAAAGGTATCAG
AATCGATCCGACCTCAACATGCACACTCGTCTTGTGGACTTTCCGCTGCC
CAAACGAGACTGTGCTGCAATTCTGCTCGCGCACGCTCTGTTGCGGGAAT
CGCCTTGTATCTCAGAGGCAGAGCTTCTGGCTTTCGAAAGCAGTTTTGGT
TCAGCAAAGGACGCCGATCAGGCGAGCAGGAATAGTAGAAGAGCGTTTTT
GGAAGTTCTGGGAACCGCGTGTATGTGGGGTTCGCTGGAAAGATATGCTA
CGGGAGTGCTTGCGTTCGACATTGACTGTACATCGAATCTGGTATTTGCC
ATGGGGAGAGCGGAGCCTACGATTACAGAGTTTTGTCAGAGTGTGGAAGG
AAAGAAGATTGGCTTGAGTCTGGCGGTTGGTGATGACGGAAAACTGGTGA
GAAATCGCTCGGACCCAAAAGCCACAAGGGCTCAATCTCTTCGAAGCGCT
ACCAGAAGCAAGAAAAGGCTGCACAGAAAGAGAACTAGTTCGGTGTTGAG
CTCTGGACTGCGGGTCGCTCGCATGTTTAGCACCGACGAACTGCGGACGA
AAGAGAGTCCGGCCGTTGCATAG

protein sequence of Gcaud7364.t1

>Gcaud7364.t1 ID=Gcaud7364.t1|Name=Gcaud7364.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=741bp
MRSRVSNMHHHARSVRPAASAPALSQALSSSTSLSSATVATASTVPRRPD
SAQARSLPREPAPESRLPSVDDSSTPRRLVTDTSQRAHFVRALLPPPSSH
MLHHNCASITQFLRPVTLPIDCVPDAADPSFKAHSSLLRKIALHHFELNR
YLFAYKPLARVHAVMAATLLSPAHIDSNTFPMSSLLRTAVMYLAGNSYRN
VYVMTYAAQLKSIHRSTPPAQGIMPSVLLKGHHLPKSELLALDFAQQMLS
DEYAVSEAISKRFIDMHANEVCAVDRYVAATCAYGAFLSTLTSPLDLELT
HAAIQYASTNLQGLPWKSSAAPLNVGFTDDDLGNFGSSAHHSTFGARVKP
MKERFSLHNNYHRHHQNGKSRPRAIRKVSHFLSHSIMAPKIIADVNRVTE
NWMSNAHVPSPGQLFETNDFISHIFGFEPFYFSTQAMAGEAMRRAFLYGC
TELLFGERDIPRRLKFILCYVLSSGKERRRIDTDHTKSFETQGLHNGRSI
TSVYKQRPYDALSIMSAHAAYLACKYGSCAAELVAATDVSRVRSAMERYQ
NRSDLNMHTRLVDFPLPKRDCAAILLAHALLRESPCISEAELLAFESSFG
SAKDADQASRNSRRAFLEVLGTACMWGSLERYATGVLAFDIDCTSNLVFA
MGRAEPTITEFCQSVEGKKIGLSLAVGDDGKLVRNRSDPKATRAQSLRSA
TRSKKRLHRKRTSSVLSSGLRVARMFSTDELRTKESPAVA*

mRNA from alignment at NODE_85_length_54060_cov_4.846356:16397..18619+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7364.t1 ID=Gcaud7364.t1|Name=Gcaud7364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2223bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:16397..18619+ (Gracilaria caudata M_176_S67 male)
ATGCGCTCGCGCGTGTCCAATATGCACCACCACGCGCGCTCCGTGCGTCC
CGCCGCCTCTGCGCCCGCGCTGTCGCAGGCGCTGTCCTCCTCCACGTCGC
TGTCCTCCGCCACCGTCGCCACTGCCTCCACGGTGCCGCGTCGTCCCGAC
TCCGCGCAGGCGCGCTCGCTGCCGAGAGAGCCGGCGCCGGAGTCGCGGCT
GCCGTCCGTGGATGACTCCTCGACGCCGCGTCGTCTCGTCACCGACACCT
CGCAACGCGCGCACTTTGTGCGCGCGTTGCTGCCGCCGCCGTCTTCGCAT
ATGCTGCATCACAACTGTGCGTCCATCACGCAGTTTTTGCGGCCGGTGAC
GCTTCCCATCGACTGTGTGCCGGACGCGGCTGATCCGTCGTTCAAGGCGC
ATTCTTCGCTGCTGCGCAAGATTGCGTTGCATCACTTTGAGCTCAACCGA
TACTTGTTTGCGTACAAGCCGTTGGCACGCGTGCATGCGGTGATGGCCGC
TACATTGCTTTCGCCGGCGCACATTGACTCCAATACGTTTCCGATGTCGT
CGCTGCTCCGCACCGCCGTCATGTACCTGGCGGGCAATTCGTATCGCAAT
GTGTACGTCATGACGTATGCCGCGCAGCTCAAGAGCATTCATCGTTCCAC
TCCGCCCGCGCAGGGGATCATGCCCTCCGTGCTGTTGAAGGGGCATCATC
TTCCCAAGTCTGAGCTGCTGGCGTTGGACTTTGCGCAGCAGATGCTCTCG
GATGAGTATGCAGTGTCAGAAGCAATAAGCAAACGTTTTATCGATATGCA
TGCCAACGAGGTGTGTGCGGTAGATCGATACGTTGCTGCCACTTGTGCGT
ACGGTGCCTTTCTGTCCACCCTTACTAGCCCTCTGGACCTCGAGCTTACG
CACGCCGCCATTCAGTACGCGTCCACCAACTTGCAGGGCCTTCCTTGGAA
GTCCAGCGCCGCGCCGTTGAACGTCGGTTTCACGGATGATGATTTGGGTA
ACTTCGGCTCCTCCGCTCATCATTCCACGTTCGGTGCCAGGGTCAAGCCC
ATGAAGGAGCGCTTCAGCCTGCATAACAACTACCATCGCCACCATCAAAA
CGGAAAGAGTCGGCCACGTGCCATCCGCAAGGTGTCCCATTTTCTCTCGC
ACTCTATCATGGCGCCGAAGATCATCGCCGACGTCAACCGAGTCACCGAG
AACTGGATGAGCAATGCTCACGTACCGTCCCCCGGTCAGCTGTTTGAAAC
CAACGACTTTATCTCTCATATATTTGGCTTTGAGCCCTTTTACTTTTCGA
CACAAGCAATGGCTGGAGAGGCCATGAGACGCGCTTTTCTATACGGCTGT
ACCGAGCTCTTGTTCGGCGAACGCGATATTCCGAGACGTCTCAAGTTTAT
TCTGTGCTACGTTCTGTCCTCTGGTAAGGAGCGTCGTAGAATAGATACCG
ATCATACAAAGAGCTTCGAAACGCAGGGATTGCACAATGGTCGTTCTATC
ACCTCCGTGTACAAGCAGAGACCGTATGATGCATTGAGTATCATGTCTGC
GCATGCTGCGTATCTCGCCTGCAAATACGGCTCGTGCGCGGCTGAACTGG
TGGCTGCCACGGATGTCAGTCGAGTGCGGAGCGCGATGGAAAGGTATCAG
AATCGATCCGACCTCAACATGCACACTCGTCTTGTGGACTTTCCGCTGCC
CAAACGAGACTGTGCTGCAATTCTGCTCGCGCACGCTCTGTTGCGGGAAT
CGCCTTGTATCTCAGAGGCAGAGCTTCTGGCTTTCGAAAGCAGTTTTGGT
TCAGCAAAGGACGCCGATCAGGCGAGCAGGAATAGTAGAAGAGCGTTTTT
GGAAGTTCTGGGAACCGCGTGTATGTGGGGTTCGCTGGAAAGATATGCTA
CGGGAGTGCTTGCGTTCGACATTGACTGTACATCGAATCTGGTATTTGCC
ATGGGGAGAGCGGAGCCTACGATTACAGAGTTTTGTCAGAGTGTGGAAGG
AAAGAAGATTGGCTTGAGTCTGGCGGTTGGTGATGACGGAAAACTGGTGA
GAAATCGCTCGGACCCAAAAGCCACAAGGGCTCAATCTCTTCGAAGCGCT
ACCAGAAGCAAGAAAAGGCTGCACAGAAAGAGAACTAGTTCGGTGTTGAG
CTCTGGACTGCGGGTCGCTCGCATGTTTAGCACCGACGAACTGCGGACGA
AAGAGAGTCCGGCCGTTGCATAG

Coding sequence (CDS) from alignment at NODE_85_length_54060_cov_4.846356:16397..18619+

>Gcaud7364.t1 ID=Gcaud7364.t1|Name=Gcaud7364.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2223bp|location=Sequence derived from alignment at NODE_85_length_54060_cov_4.846356:16397..18619+ (Gracilaria caudata M_176_S67 male)
ATGCGCTCGCGCGTGTCCAATATGCACCACCACGCGCGCTCCGTGCGTCC
CGCCGCCTCTGCGCCCGCGCTGTCGCAGGCGCTGTCCTCCTCCACGTCGC
TGTCCTCCGCCACCGTCGCCACTGCCTCCACGGTGCCGCGTCGTCCCGAC
TCCGCGCAGGCGCGCTCGCTGCCGAGAGAGCCGGCGCCGGAGTCGCGGCT
GCCGTCCGTGGATGACTCCTCGACGCCGCGTCGTCTCGTCACCGACACCT
CGCAACGCGCGCACTTTGTGCGCGCGTTGCTGCCGCCGCCGTCTTCGCAT
ATGCTGCATCACAACTGTGCGTCCATCACGCAGTTTTTGCGGCCGGTGAC
GCTTCCCATCGACTGTGTGCCGGACGCGGCTGATCCGTCGTTCAAGGCGC
ATTCTTCGCTGCTGCGCAAGATTGCGTTGCATCACTTTGAGCTCAACCGA
TACTTGTTTGCGTACAAGCCGTTGGCACGCGTGCATGCGGTGATGGCCGC
TACATTGCTTTCGCCGGCGCACATTGACTCCAATACGTTTCCGATGTCGT
CGCTGCTCCGCACCGCCGTCATGTACCTGGCGGGCAATTCGTATCGCAAT
GTGTACGTCATGACGTATGCCGCGCAGCTCAAGAGCATTCATCGTTCCAC
TCCGCCCGCGCAGGGGATCATGCCCTCCGTGCTGTTGAAGGGGCATCATC
TTCCCAAGTCTGAGCTGCTGGCGTTGGACTTTGCGCAGCAGATGCTCTCG
GATGAGTATGCAGTGTCAGAAGCAATAAGCAAACGTTTTATCGATATGCA
TGCCAACGAGGTGTGTGCGGTAGATCGATACGTTGCTGCCACTTGTGCGT
ACGGTGCCTTTCTGTCCACCCTTACTAGCCCTCTGGACCTCGAGCTTACG
CACGCCGCCATTCAGTACGCGTCCACCAACTTGCAGGGCCTTCCTTGGAA
GTCCAGCGCCGCGCCGTTGAACGTCGGTTTCACGGATGATGATTTGGGTA
ACTTCGGCTCCTCCGCTCATCATTCCACGTTCGGTGCCAGGGTCAAGCCC
ATGAAGGAGCGCTTCAGCCTGCATAACAACTACCATCGCCACCATCAAAA
CGGAAAGAGTCGGCCACGTGCCATCCGCAAGGTGTCCCATTTTCTCTCGC
ACTCTATCATGGCGCCGAAGATCATCGCCGACGTCAACCGAGTCACCGAG
AACTGGATGAGCAATGCTCACGTACCGTCCCCCGGTCAGCTGTTTGAAAC
CAACGACTTTATCTCTCATATATTTGGCTTTGAGCCCTTTTACTTTTCGA
CACAAGCAATGGCTGGAGAGGCCATGAGACGCGCTTTTCTATACGGCTGT
ACCGAGCTCTTGTTCGGCGAACGCGATATTCCGAGACGTCTCAAGTTTAT
TCTGTGCTACGTTCTGTCCTCTGGTAAGGAGCGTCGTAGAATAGATACCG
ATCATACAAAGAGCTTCGAAACGCAGGGATTGCACAATGGTCGTTCTATC
ACCTCCGTGTACAAGCAGAGACCGTATGATGCATTGAGTATCATGTCTGC
GCATGCTGCGTATCTCGCCTGCAAATACGGCTCGTGCGCGGCTGAACTGG
TGGCTGCCACGGATGTCAGTCGAGTGCGGAGCGCGATGGAAAGGTATCAG
AATCGATCCGACCTCAACATGCACACTCGTCTTGTGGACTTTCCGCTGCC
CAAACGAGACTGTGCTGCAATTCTGCTCGCGCACGCTCTGTTGCGGGAAT
CGCCTTGTATCTCAGAGGCAGAGCTTCTGGCTTTCGAAAGCAGTTTTGGT
TCAGCAAAGGACGCCGATCAGGCGAGCAGGAATAGTAGAAGAGCGTTTTT
GGAAGTTCTGGGAACCGCGTGTATGTGGGGTTCGCTGGAAAGATATGCTA
CGGGAGTGCTTGCGTTCGACATTGACTGTACATCGAATCTGGTATTTGCC
ATGGGGAGAGCGGAGCCTACGATTACAGAGTTTTGTCAGAGTGTGGAAGG
AAAGAAGATTGGCTTGAGTCTGGCGGTTGGTGATGACGGAAAACTGGTGA
GAAATCGCTCGGACCCAAAAGCCACAAGGGCTCAATCTCTTCGAAGCGCT
ACCAGAAGCAAGAAAAGGCTGCACAGAAAGAGAACTAGTTCGGTGTTGAG
CTCTGGACTGCGGGTCGCTCGCATGTTTAGCACCGACGAACTGCGGACGA
AAGAGAGTCCGGCCGTTGCATAG