Gcaud7352.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7352.t1
Unique Name	Gcaud7352.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	404

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1542_length_9851_cov_4.655123	contig	NODE_1542_length_9851_cov_4.655123:7801..9245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7176.CPIJ003737-PA
PFAMs	THAP,zf-AD,zf-C2H2,zf-C2H2_4,zf-C2H2_6,zf-met
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09228
Evalue	2.64e-05
EggNOG OGs	KOG1721@1\|root,KOG1721@2759\|Eukaryota,38BZ9@33154\|Opisthokonta,3BA9A@33208\|Metazoa,3CT35@33213\|Bilateria
Description	nucleic acid binding
COG category	C
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7352	Gcaud7352	Gracilaria caudata M_176_S67 male	gene	NODE_1542_length_9851_cov_4.655123 7801..9245 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7352.t1	Gcaud7352.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1542_length_9851_cov_4.655123 7801..9245 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7352.t1.start1	Gcaud7352.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1542_length_9851_cov_4.655123 7801..7803 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7352.t1.CDS1	Gcaud7352.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1542_length_9851_cov_4.655123 7801..8890 +
Gcaud7352.t1.CDS2	Gcaud7352.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1542_length_9851_cov_4.655123 9124..9245 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7352.t1.exon1	Gcaud7352.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1542_length_9851_cov_4.655123 7801..8890 +
Gcaud7352.t1.exon2	Gcaud7352.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1542_length_9851_cov_4.655123 9124..9245 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7352.t1.intron1	Gcaud7352.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1542_length_9851_cov_4.655123 8891..9123 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7352.t1.stop1	Gcaud7352.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1542_length_9851_cov_4.655123 9243..9245 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1542_length_9851_cov_4.655123:7801..9245+
coding sequence from alignment at NODE_1542_length_9851_cov_4.655123:7801..9245+

mRNA sequence

>Gcaud7352.t1 ID=Gcaud7352.t1|Name=Gcaud7352.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=404bp
MLKDPLEDTEAVTPDSPDVGRPEQRSSATNRSKRNKKRKRRDEDQNQPPK
RRFVEPEVENEDWTKLGNYFDEEVEGPALSTDREDEQSSSAEETQGSAQT
EGQQAETRSVPTTQEAQDDADEPTASSLPLHALGGGASTEHKQRVQQPQR
LGLVGESAAPNVLTSSVGVGAAPIVQSSAFGVGAAPNVQASAAGVGAAPY
AQAPAVNAGARPSAQTPAEDVSAPRYGQPVGRLLKLRGRDEHPNVPNLIV
QQAHIECQQCGKHFGSELAVERHTLRVHKTEGTFQCRHCPLKLKSELNRK
KHEKTQHDCDGRQRIECDVEGCTAFFNKPINLTSHKKQFHGALFRDRTEE
NKGNERSVYACHFLRRQEPAIDRDSMGKLNQAHGVQNRTTSMPSISLVPN
SSR*

spliced messenger RNA

>Gcaud7352.t1 ID=Gcaud7352.t1|Name=Gcaud7352.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at NODE_1542_length_9851_cov_4.655123:7801..9245+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAAGGATCCATTGGAAGATACTGAAGCAGTCACTCCTGATAGCCC
CGATGTTGGCAGACCTGAACAGCGTTCGAGTGCAACGAATAGAAGTAAAA
GGAATAAAAAAAGGAAAAGGAGAGATGAAGATCAAAACCAGCCGCCGAAA
AGACGGTTCGTTGAGCCTGAAGTTGAAAATGAGGATTGGACAAAGTTGGG
AAATTACTTTGACGAAGAGGTTGAGGGGCCGGCCTTATCAACTGATCGAG
AGGATGAACAAAGTTCAAGTGCAGAGGAGACACAGGGCAGTGCACAAACG
GAAGGGCAACAAGCTGAAACGCGTAGTGTACCGACTACACAAGAAGCACA
AGACGATGCAGACGAGCCGACAGCGTCTTCATTGCCACTTCACGCACTTG
GTGGTGGAGCAAGCACTGAACACAAGCAACGGGTTCAGCAGCCGCAGAGA
CTTGGGCTTGTTGGTGAGAGCGCTGCGCCAAACGTGCTGACGTCCTCTGT
CGGTGTGGGAGCAGCGCCGATCGTGCAATCGTCTGCCTTTGGTGTGGGTG
CGGCACCGAACGTGCAAGCTTCCGCAGCTGGTGTGGGTGCAGCGCCATAC
GCGCAAGCGCCCGCAGTCAATGCGGGTGCACGGCCAAGTGCACAAACGCC
CGCAGAAGATGTGAGTGCACCGCGGTACGGGCAACCGGTGGGCCGACTTT
TGAAGCTGAGAGGACGAGATGAGCATCCCAACGTGCCCAACCTGATTGTG
CAACAGGCTCATATTGAGTGCCAGCAATGTGGCAAGCACTTTGGCTCCGA
ACTGGCAGTTGAACGGCATACGCTGCGCGTGCACAAGACGGAAGGAACGT
TCCAGTGTCGCCATTGTCCCCTAAAACTCAAGTCCGAACTCAATCGAAAG
AAGCATGAGAAGACGCAGCACGACTGCGACGGAAGACAACGAATCGAATG
CGACGTTGAGGGCTGCACCGCCTTTTTCAACAAGCCCATCAACTTAACCT
CTCACAAGAAACAGTTCCACGGAGCACTGTTCCGGGACAGAACGGAGGAA
AATAAGGGCAATGAGAGAAGTGTGTATGCGTGCCATTTTTTACGTAGACA
AGAGCCAGCGATCGATCGTGATTCCATGGGCAAACTAAATCAGGCGCACG
GTGTTCAAAATCGCACCACCTCCATGCCAAGTATCTCTCTCGTGCCTAAC
TCCTCTCGTTGA

protein sequence of Gcaud7352.t1

>Gcaud7352.t1 ID=Gcaud7352.t1|Name=Gcaud7352.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=404bp
MLKDPLEDTEAVTPDSPDVGRPEQRSSATNRSKRNKKRKRRDEDQNQPPK
RRFVEPEVENEDWTKLGNYFDEEVEGPALSTDREDEQSSSAEETQGSAQT
EGQQAETRSVPTTQEAQDDADEPTASSLPLHALGGGASTEHKQRVQQPQR
LGLVGESAAPNVLTSSVGVGAAPIVQSSAFGVGAAPNVQASAAGVGAAPY
AQAPAVNAGARPSAQTPAEDVSAPRYGQPVGRLLKLRGRDEHPNVPNLIV
QQAHIECQQCGKHFGSELAVERHTLRVHKTEGTFQCRHCPLKLKSELNRK
KHEKTQHDCDGRQRIECDVEGCTAFFNKPINLTSHKKQFHGALFRDRTEE
NKGNERSVYACHFLRRQEPAIDRDSMGKLNQAHGVQNRTTSMPSISLVPN
SSR*

mRNA from alignment at NODE_1542_length_9851_cov_4.655123:7801..9245+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7352.t1 ID=Gcaud7352.t1|Name=Gcaud7352.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1445bp|location=Sequence derived from alignment at NODE_1542_length_9851_cov_4.655123:7801..9245+ (Gracilaria caudata M_176_S67 male)
ATGCTAAAGGATCCATTGGAAGATACTGAAGCAGTCACTCCTGATAGCCC
CGATGTTGGCAGACCTGAACAGCGTTCGAGTGCAACGAATAGAAGTAAAA
GGAATAAAAAAAGGAAAAGGAGAGATGAAGATCAAAACCAGCCGCCGAAA
AGACGGTTCGTTGAGCCTGAAGTTGAAAATGAGGATTGGACAAAGTTGGG
AAATTACTTTGACGAAGAGGTTGAGGGGCCGGCCTTATCAACTGATCGAG
AGGATGAACAAAGTTCAAGTGCAGAGGAGACACAGGGCAGTGCACAAACG
GAAGGGCAACAAGCTGAAACGCGTAGTGTACCGACTACACAAGAAGCACA
AGACGATGCAGACGAGCCGACAGCGTCTTCATTGCCACTTCACGCACTTG
GTGGTGGAGCAAGCACTGAACACAAGCAACGGGTTCAGCAGCCGCAGAGA
CTTGGGCTTGTTGGTGAGAGCGCTGCGCCAAACGTGCTGACGTCCTCTGT
CGGTGTGGGAGCAGCGCCGATCGTGCAATCGTCTGCCTTTGGTGTGGGTG
CGGCACCGAACGTGCAAGCTTCCGCAGCTGGTGTGGGTGCAGCGCCATAC
GCGCAAGCGCCCGCAGTCAATGCGGGTGCACGGCCAAGTGCACAAACGCC
CGCAGAAGATGTGAGTGCACCGCGGTACGGGCAACCGGTGGGCCGACTTT
TGAAGCTGAGAGGACGAGATGAGCATCCCAACGTGCCCAACCTGATTGTG
CAACAGGCTCATATTGAGTGCCAGCAATGTGGCAAGCACTTTGGCTCCGA
ACTGGCAGTTGAACGGCATACGCTGCGCGTGCACAAGACGGAAGGAACGT
TCCAGTGTCGCCATTGTCCCCTAAAACTCAAGTCCGAACTCAATCGAAAG
AAGCATGAGAAGACGCAGCACGACTGCGACGGAAGACAACGAATCGAATG
CGACGTTGAGGGCTGCACCGCCTTTTTCAACAAGCCCATCAACTTAACCT
CTCACAAGAAACAGTTCCACGGAGCACTGTTCCGGGACAGAACGGAGGAA
AATAAGGGCAATGAGAGAAGTGTGTATGCGTGCCATTTTTGTGAGTATAC
GACCAGGGCGCGCGCCAACCTGAACCGCCATGTGTTCTCCAAGCACGGCG
CGGGGCGCGAGATGAGGGCGGCGCATTCGGTGGCGTGCCGCGGGTGCAGC
AGGACTTTTGTGCACTCGACGAATTTCGTCATTCACCAGTGCAATCGAAG
CAGGCATGGAAAGCGCCGCCAGTGAGGCCGAGGTTAGCGCTTGTGTGTGT
ATGAAACTTATGCATGTGCGAAGTACGTAGACAAGAGCCAGCGATCGATC
GTGATTCCATGGGCAAACTAAATCAGGCGCACGGTGTTCAAAATCGCACC
ACCTCCATGCCAAGTATCTCTCTCGTGCCTAACTCCTCTCGTTGA

Coding sequence (CDS) from alignment at NODE_1542_length_9851_cov_4.655123:7801..9245+

>Gcaud7352.t1 ID=Gcaud7352.t1|Name=Gcaud7352.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1212bp|location=Sequence derived from alignment at NODE_1542_length_9851_cov_4.655123:7801..9245+ (Gracilaria caudata M_176_S67 male)
ATGCTAAAGGATCCATTGGAAGATACTGAAGCAGTCACTCCTGATAGCCC
CGATGTTGGCAGACCTGAACAGCGTTCGAGTGCAACGAATAGAAGTAAAA
GGAATAAAAAAAGGAAAAGGAGAGATGAAGATCAAAACCAGCCGCCGAAA
AGACGGTTCGTTGAGCCTGAAGTTGAAAATGAGGATTGGACAAAGTTGGG
AAATTACTTTGACGAAGAGGTTGAGGGGCCGGCCTTATCAACTGATCGAG
AGGATGAACAAAGTTCAAGTGCAGAGGAGACACAGGGCAGTGCACAAACG
GAAGGGCAACAAGCTGAAACGCGTAGTGTACCGACTACACAAGAAGCACA
AGACGATGCAGACGAGCCGACAGCGTCTTCATTGCCACTTCACGCACTTG
GTGGTGGAGCAAGCACTGAACACAAGCAACGGGTTCAGCAGCCGCAGAGA
CTTGGGCTTGTTGGTGAGAGCGCTGCGCCAAACGTGCTGACGTCCTCTGT
CGGTGTGGGAGCAGCGCCGATCGTGCAATCGTCTGCCTTTGGTGTGGGTG
CGGCACCGAACGTGCAAGCTTCCGCAGCTGGTGTGGGTGCAGCGCCATAC
GCGCAAGCGCCCGCAGTCAATGCGGGTGCACGGCCAAGTGCACAAACGCC
CGCAGAAGATGTGAGTGCACCGCGGTACGGGCAACCGGTGGGCCGACTTT
TGAAGCTGAGAGGACGAGATGAGCATCCCAACGTGCCCAACCTGATTGTG
CAACAGGCTCATATTGAGTGCCAGCAATGTGGCAAGCACTTTGGCTCCGA
ACTGGCAGTTGAACGGCATACGCTGCGCGTGCACAAGACGGAAGGAACGT
TCCAGTGTCGCCATTGTCCCCTAAAACTCAAGTCCGAACTCAATCGAAAG
AAGCATGAGAAGACGCAGCACGACTGCGACGGAAGACAACGAATCGAATG
CGACGTTGAGGGCTGCACCGCCTTTTTCAACAAGCCCATCAACTTAACCT
CTCACAAGAAACAGTTCCACGGAGCACTGTTCCGGGACAGAACGGAGGAA
AATAAGGGCAATGAGAGAAGTGTGTATGCGTGCCATTTTTTACGTAGACA
AGAGCCAGCGATCGATCGTGATTCCATGGGCAAACTAAATCAGGCGCACG
GTGTTCAAAATCGCACCACCTCCATGCCAAGTATCTCTCTCGTGCCTAAC
TCCTCTCGTTGA