Gcaud7304.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7304.t1
Unique Name	Gcaud7304.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_716_length_19192_cov_4.213758	contig	NODE_716_length_19192_cov_4.213758:14798..15775 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD15795
PFAMs	Methyltransf_21
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00395
KEGG ko	ko:K01847
KEGG Reaction	R00833
KEGG Pathway	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200
KEGG Module	M00373,M00376,M00741
Evalue	9.38e-13
EggNOG OGs	2DYJ5@1\|root,2S6V0@2759\|Eukaryota
EC	5.4.99.2
Description	Methyltransferase FkbM domain
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7304	Gcaud7304	Gracilaria caudata M_176_S67 male	gene	NODE_716_length_19192_cov_4.213758 14798..15775 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7304.t1.stop1	Gcaud7304.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_716_length_19192_cov_4.213758 14798..14800 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7304.t1.CDS1	Gcaud7304.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_716_length_19192_cov_4.213758 14798..15775 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7304.t1.exon1	Gcaud7304.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_716_length_19192_cov_4.213758 14798..15775 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7304.t1.start1	Gcaud7304.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_716_length_19192_cov_4.213758 15773..15775 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7304.t1	Gcaud7304.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_716_length_19192_cov_4.213758 14798..15775 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_716_length_19192_cov_4.213758:14798..15775-
coding sequence from alignment at NODE_716_length_19192_cov_4.213758:14798..15775-

mRNA sequence

>Gcaud7304.t1 ID=Gcaud7304.t1|Name=Gcaud7304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=326bp
MLSVVVFLVATMSACVLCAYAVPASLPHLREKRVYSTNMLPAFKKDNPQL
FPPGLLHKHAKHMLVLDIGANNGDSYTLTAAQHGHPVIAFEPSPIVNSLF
QKVMRQHKVPLSVYNFTSGQHSQQYSASKPSKLSSNNVFLIPVALSNTTT
VLNFHQSPCSDLQKCGKINHLAPDSNAKTAVKVPVYRLDDVPLPADPKNI
WFMKIDVEGYELQVLKGARKLISHAKIPYISIEFAPHGKNGTQWGVDLLE
ELYRQGYSCHHLRGFGRCHDRQFRSPSLKCNYPFSLHDWKNAPTFEEYTE
TFEMRADRHKKSSLADLMCIRHGLK*

spliced messenger RNA

>Gcaud7304.t1 ID=Gcaud7304.t1|Name=Gcaud7304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_716_length_19192_cov_4.213758:14798..15775- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAGCGTCGTCGTCTTCTTGGTCGCCACCATGAGCGCATGCGTGCT
GTGTGCATACGCAGTGCCTGCTTCGCTGCCGCATCTGCGTGAGAAGCGAG
TGTATTCCACAAACATGCTGCCCGCCTTCAAAAAGGACAACCCGCAGCTG
TTTCCGCCTGGACTGCTGCACAAACACGCCAAACACATGCTTGTTCTGGA
CATTGGTGCCAACAACGGCGATTCGTACACCCTCACCGCCGCTCAACACG
GCCATCCCGTCATTGCCTTTGAGCCCAGTCCCATTGTCAATTCGCTCTTC
CAAAAAGTCATGCGTCAGCACAAAGTGCCTCTCAGCGTGTATAATTTCAC
CTCCGGTCAACATTCGCAGCAATATTCCGCGTCCAAGCCGAGCAAACTGT
CGTCCAACAACGTGTTTTTGATTCCGGTGGCGCTGTCCAATACCACCACT
GTTCTCAACTTTCATCAGTCGCCGTGTTCCGATCTGCAAAAGTGTGGAAA
GATCAATCATCTTGCGCCTGATTCAAACGCCAAGACGGCGGTGAAGGTGC
CGGTGTATCGTCTGGACGACGTTCCGCTGCCGGCCGACCCCAAAAACATC
TGGTTCATGAAAATCGATGTGGAGGGCTATGAACTACAGGTTTTGAAGGG
AGCTAGAAAGCTCATCAGTCACGCCAAGATCCCGTACATCAGCATTGAGT
TTGCGCCGCATGGCAAGAACGGTACGCAATGGGGCGTCGATCTGTTGGAA
GAGTTGTATCGACAGGGTTATTCCTGTCATCATTTGAGAGGTTTTGGTCG
ATGTCATGATCGACAATTCAGATCTCCTAGTCTCAAGTGCAACTATCCAT
TTTCTTTGCACGATTGGAAGAACGCACCCACTTTTGAAGAGTATACCGAG
ACGTTTGAGATGAGAGCCGATCGTCACAAAAAGAGCAGCCTTGCCGATCT
CATGTGCATTCGTCATGGTCTGAAATGA

protein sequence of Gcaud7304.t1

>Gcaud7304.t1 ID=Gcaud7304.t1|Name=Gcaud7304.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=326bp
MLSVVVFLVATMSACVLCAYAVPASLPHLREKRVYSTNMLPAFKKDNPQL
FPPGLLHKHAKHMLVLDIGANNGDSYTLTAAQHGHPVIAFEPSPIVNSLF
QKVMRQHKVPLSVYNFTSGQHSQQYSASKPSKLSSNNVFLIPVALSNTTT
VLNFHQSPCSDLQKCGKINHLAPDSNAKTAVKVPVYRLDDVPLPADPKNI
WFMKIDVEGYELQVLKGARKLISHAKIPYISIEFAPHGKNGTQWGVDLLE
ELYRQGYSCHHLRGFGRCHDRQFRSPSLKCNYPFSLHDWKNAPTFEEYTE
TFEMRADRHKKSSLADLMCIRHGLK*

mRNA from alignment at NODE_716_length_19192_cov_4.213758:14798..15775-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7304.t1 ID=Gcaud7304.t1|Name=Gcaud7304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_716_length_19192_cov_4.213758:14798..15775- (Gracilaria caudata M_176_S67 male)
ATGCTCAGCGTCGTCGTCTTCTTGGTCGCCACCATGAGCGCATGCGTGCT
GTGTGCATACGCAGTGCCTGCTTCGCTGCCGCATCTGCGTGAGAAGCGAG
TGTATTCCACAAACATGCTGCCCGCCTTCAAAAAGGACAACCCGCAGCTG
TTTCCGCCTGGACTGCTGCACAAACACGCCAAACACATGCTTGTTCTGGA
CATTGGTGCCAACAACGGCGATTCGTACACCCTCACCGCCGCTCAACACG
GCCATCCCGTCATTGCCTTTGAGCCCAGTCCCATTGTCAATTCGCTCTTC
CAAAAAGTCATGCGTCAGCACAAAGTGCCTCTCAGCGTGTATAATTTCAC
CTCCGGTCAACATTCGCAGCAATATTCCGCGTCCAAGCCGAGCAAACTGT
CGTCCAACAACGTGTTTTTGATTCCGGTGGCGCTGTCCAATACCACCACT
GTTCTCAACTTTCATCAGTCGCCGTGTTCCGATCTGCAAAAGTGTGGAAA
GATCAATCATCTTGCGCCTGATTCAAACGCCAAGACGGCGGTGAAGGTGC
CGGTGTATCGTCTGGACGACGTTCCGCTGCCGGCCGACCCCAAAAACATC
TGGTTCATGAAAATCGATGTGGAGGGCTATGAACTACAGGTTTTGAAGGG
AGCTAGAAAGCTCATCAGTCACGCCAAGATCCCGTACATCAGCATTGAGT
TTGCGCCGCATGGCAAGAACGGTACGCAATGGGGCGTCGATCTGTTGGAA
GAGTTGTATCGACAGGGTTATTCCTGTCATCATTTGAGAGGTTTTGGTCG
ATGTCATGATCGACAATTCAGATCTCCTAGTCTCAAGTGCAACTATCCAT
TTTCTTTGCACGATTGGAAGAACGCACCCACTTTTGAAGAGTATACCGAG
ACGTTTGAGATGAGAGCCGATCGTCACAAAAAGAGCAGCCTTGCCGATCT
CATGTGCATTCGTCATGGTCTGAAATGA

Coding sequence (CDS) from alignment at NODE_716_length_19192_cov_4.213758:14798..15775-

>Gcaud7304.t1 ID=Gcaud7304.t1|Name=Gcaud7304.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=978bp|location=Sequence derived from alignment at NODE_716_length_19192_cov_4.213758:14798..15775- (Gracilaria caudata M_176_S67 male)
ATGCTCAGCGTCGTCGTCTTCTTGGTCGCCACCATGAGCGCATGCGTGCT
GTGTGCATACGCAGTGCCTGCTTCGCTGCCGCATCTGCGTGAGAAGCGAG
TGTATTCCACAAACATGCTGCCCGCCTTCAAAAAGGACAACCCGCAGCTG
TTTCCGCCTGGACTGCTGCACAAACACGCCAAACACATGCTTGTTCTGGA
CATTGGTGCCAACAACGGCGATTCGTACACCCTCACCGCCGCTCAACACG
GCCATCCCGTCATTGCCTTTGAGCCCAGTCCCATTGTCAATTCGCTCTTC
CAAAAAGTCATGCGTCAGCACAAAGTGCCTCTCAGCGTGTATAATTTCAC
CTCCGGTCAACATTCGCAGCAATATTCCGCGTCCAAGCCGAGCAAACTGT
CGTCCAACAACGTGTTTTTGATTCCGGTGGCGCTGTCCAATACCACCACT
GTTCTCAACTTTCATCAGTCGCCGTGTTCCGATCTGCAAAAGTGTGGAAA
GATCAATCATCTTGCGCCTGATTCAAACGCCAAGACGGCGGTGAAGGTGC
CGGTGTATCGTCTGGACGACGTTCCGCTGCCGGCCGACCCCAAAAACATC
TGGTTCATGAAAATCGATGTGGAGGGCTATGAACTACAGGTTTTGAAGGG
AGCTAGAAAGCTCATCAGTCACGCCAAGATCCCGTACATCAGCATTGAGT
TTGCGCCGCATGGCAAGAACGGTACGCAATGGGGCGTCGATCTGTTGGAA
GAGTTGTATCGACAGGGTTATTCCTGTCATCATTTGAGAGGTTTTGGTCG
ATGTCATGATCGACAATTCAGATCTCCTAGTCTCAAGTGCAACTATCCAT
TTTCTTTGCACGATTGGAAGAACGCACCCACTTTTGAAGAGTATACCGAG
ACGTTTGAGATGAGAGCCGATCGTCACAAAAAGAGCAGCCTTGCCGATCT
CATGTGCATTCGTCATGGTCTGAAATGA