Gcaud7257.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7257.t1
Unique NameGcaud7257.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_86_length_54060_cov_4.498935contigNODE_86_length_54060_cov_4.498935:43916..44502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002947825.1
PFAMsMPC
Max annot lvl3041|Chlorophyta
KEGG koko:K22138
KEGG TC2.A.105.1
Evalue6.17e-39
EggNOG OGsKOG1590@1|root,KOG1590@2759|Eukaryota,37US3@33090|Viridiplantae,34I50@3041|Chlorophyta
DescriptionMediates the uptake of pyruvate into mitochondria
COG categoryC
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7257Gcaud7257Gracilaria caudata M_176_S67 malegeneNODE_86_length_54060_cov_4.498935 43916..44502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7257.t1Gcaud7257.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_86_length_54060_cov_4.498935 43916..44502 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7257.t1.start1Gcaud7257.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_86_length_54060_cov_4.498935 43916..43918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7257.t1.CDS1Gcaud7257.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_86_length_54060_cov_4.498935 43916..44073 +
Gcaud7257.t1.CDS2Gcaud7257.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_86_length_54060_cov_4.498935 44172..44502 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7257.t1.exon1Gcaud7257.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_86_length_54060_cov_4.498935 43916..44073 +
Gcaud7257.t1.exon2Gcaud7257.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_86_length_54060_cov_4.498935 44172..44502 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7257.t1.intron1Gcaud7257.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_86_length_54060_cov_4.498935 44074..44171 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7257.t1.stop1Gcaud7257.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_86_length_54060_cov_4.498935 44500..44502 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7257.t1 ID=Gcaud7257.t1|Name=Gcaud7257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=163bp
MFSSLSARIASKGIRFGSRKLSEKAGEKAGEASAAQTVTQSNGSFTSTIV
NFINSPTGPKTTHFWGPVTNWGISIAAMKDMTKSPEKVSPNMTIALCVYS
LLFMRFALRVQPTNYLLFACHGTNEVAQCYQLQRVYGGVDLFYKPPPEQE
GLAVALETQPKE*
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spliced messenger RNA

>Gcaud7257.t1 ID=Gcaud7257.t1|Name=Gcaud7257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:43916..44502+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCTCATTAAGCGCACGTATTGCTTCCAAAGGAATCCGATTTGG
TTCTCGAAAGCTGTCGGAGAAGGCCGGTGAAAAGGCAGGCGAAGCGAGCG
CCGCGCAAACTGTGACGCAGAGCAATGGCTCCTTTACAAGCACAATAGTC
AATTTTATAAATTCTCCTACAGGTCCTAAGACGACACACTTTTGGGGACC
GGTAACCAATTGGGGAATCAGCATCGCAGCTATGAAGGACATGACTAAAT
CACCAGAAAAGGTTTCGCCAAACATGACGATAGCTCTTTGTGTCTACTCA
TTGCTGTTTATGAGATTCGCACTCAGGGTTCAGCCGACGAATTATCTTTT
GTTTGCGTGTCACGGAACCAATGAAGTGGCGCAATGCTACCAGCTGCAAC
GAGTGTACGGTGGCGTGGATCTGTTTTATAAGCCGCCGCCAGAACAGGAA
GGATTGGCGGTAGCACTAGAAACACAGCCCAAAGAGTAA
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protein sequence of Gcaud7257.t1

>Gcaud7257.t1 ID=Gcaud7257.t1|Name=Gcaud7257.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MFSSLSARIASKGIRFGSRKLSEKAGEKAGEASAAQTVTQSNGSFTSTIV
NFINSPTGPKTTHFWGPVTNWGISIAAMKDMTKSPEKVSPNMTIALCVYS
LLFMRFALRVQPTNYLLFACHGTNEVAQCYQLQRVYGGVDLFYKPPPEQE
GLAVALETQPKE*
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mRNA from alignment at NODE_86_length_54060_cov_4.498935:43916..44502+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7257.t1 ID=Gcaud7257.t1|Name=Gcaud7257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=587bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:43916..44502+ (Gracilaria caudata M_176_S67 male)
ATGTTTTCCTCATTAAGCGCACGTATTGCTTCCAAAGGAATCCGATTTGG
TTCTCGAAAGCTGTCGGAGAAGGCCGGTGAAAAGGCAGGCGAAGCGAGCG
CCGCGCAAACTGTGACGCAGAGCAATGGCTCCTTTACAAGCACAATAGTC
AATTTTATGTACGTGATCCAGAAAGTGCGCTTGTAAACTCTGGAGCAAGA
CGCATCACACATTCTAACTACATCAACGCGTGAATTGGTCAACTTGATTT
CAATAGAAATTCTCCTACAGGTCCTAAGACGACACACTTTTGGGGACCGG
TAACCAATTGGGGAATCAGCATCGCAGCTATGAAGGACATGACTAAATCA
CCAGAAAAGGTTTCGCCAAACATGACGATAGCTCTTTGTGTCTACTCATT
GCTGTTTATGAGATTCGCACTCAGGGTTCAGCCGACGAATTATCTTTTGT
TTGCGTGTCACGGAACCAATGAAGTGGCGCAATGCTACCAGCTGCAACGA
GTGTACGGTGGCGTGGATCTGTTTTATAAGCCGCCGCCAGAACAGGAAGG
ATTGGCGGTAGCACTAGAAACACAGCCCAAAGAGTAA
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Coding sequence (CDS) from alignment at NODE_86_length_54060_cov_4.498935:43916..44502+

>Gcaud7257.t1 ID=Gcaud7257.t1|Name=Gcaud7257.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=489bp|location=Sequence derived from alignment at NODE_86_length_54060_cov_4.498935:43916..44502+ (Gracilaria caudata M_176_S67 male)
ATGTTTTCCTCATTAAGCGCACGTATTGCTTCCAAAGGAATCCGATTTGG
TTCTCGAAAGCTGTCGGAGAAGGCCGGTGAAAAGGCAGGCGAAGCGAGCG
CCGCGCAAACTGTGACGCAGAGCAATGGCTCCTTTACAAGCACAATAGTC
AATTTTATAAATTCTCCTACAGGTCCTAAGACGACACACTTTTGGGGACC
GGTAACCAATTGGGGAATCAGCATCGCAGCTATGAAGGACATGACTAAAT
CACCAGAAAAGGTTTCGCCAAACATGACGATAGCTCTTTGTGTCTACTCA
TTGCTGTTTATGAGATTCGCACTCAGGGTTCAGCCGACGAATTATCTTTT
GTTTGCGTGTCACGGAACCAATGAAGTGGCGCAATGCTACCAGCTGCAAC
GAGTGTACGGTGGCGTGGATCTGTTTTATAAGCCGCCGCCAGAACAGGAA
GGATTGGCGGTAGCACTAGAAACACAGCCCAAAGAGTAA
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