Gcaud7224.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7224.t1
Unique Name	Gcaud7224.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	512

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_726_length_19042_cov_4.198195	contig	NODE_726_length_19042_cov_4.198195:5029..6564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S21_158V6.1
PFAMs	V-ATPase_H_C,V-ATPase_H_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02144
KEGG TC	3.A.2.2
KEGG Pathway	ko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG Module	M00160
GOs	GO:0000221,GO:0000325,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009507,GO:0009536,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0016020,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0099131,GO:0099132,GO:1902600
Evalue	3.73e-24
EggNOG OGs	COG5231@1\|root,KOG2759@2759\|Eukaryota,37KG5@33090\|Viridiplantae,3GAXP@35493\|Streptophyta
Description	V-type proton ATPase subunit
COG category	C
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7224	Gcaud7224	Gracilaria caudata M_176_S67 male	gene	NODE_726_length_19042_cov_4.198195 5029..6564 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7224.t1.start1	Gcaud7224.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_726_length_19042_cov_4.198195 5029..5031 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7224.t1.CDS1	Gcaud7224.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_726_length_19042_cov_4.198195 5029..6564 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7224.t1.exon1	Gcaud7224.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_726_length_19042_cov_4.198195 5029..6564 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7224.t1.stop1	Gcaud7224.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_726_length_19042_cov_4.198195 6562..6564 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7224.t1	Gcaud7224.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_726_length_19042_cov_4.198195 5029..6564 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_726_length_19042_cov_4.198195:5029..6564+
coding sequence from alignment at NODE_726_length_19042_cov_4.198195:5029..6564+

mRNA sequence

>Gcaud7224.t1 ID=Gcaud7224.t1|Name=Gcaud7224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=512bp
MPANATVHTITTHSDMAWALYLSNTNQAAVSDDQLAELDAYEQATKAGPL
HRSRLLASRIGNIVHALVCTAGAVNSRVQMLRAVNLLREVLNGADYVLLR
HAIRGYTAALIEHQPTTRYSSTHNQTSSVGPPFLGPLANIAVNRVSDQQL
SAIAADSLAFLLGCASLDHGADKSIPSHICDQADEQTRRVIAMLITEIVL
TSSPPALSALSKLLRRDAARYMFCKKDGVSTLASILHTKPGRSFTAIGEQ
VANAQSNADPVEASYHAVFAVWMLTFAKDPNVVHLFLKSVVSSGLVVVLA
KLLNHSSGQRLKIARVTLASLRNMATGDTDFHRDIRRDLVSTEIPQTLQR
IMHMTSGAGSLIGKDDEAMADALALHQLLLKEKASMSSLQAYVSEVKFGA
LHWSPIHTDSVFWEKNAAKLVESHREVLGLLSDMISSAKTTDEERIIACH
DLVCIIQYSPTGRHAVASIPGLKKCLMKLMTSASSPELRLKALCCVQLIM
LSGRVAMVYNQ*

spliced messenger RNA

>Gcaud7224.t1 ID=Gcaud7224.t1|Name=Gcaud7224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at NODE_726_length_19042_cov_4.198195:5029..6564+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGCCAACGCCACCGTCCATACCATCACCACCCATTCCGACATGGC
GTGGGCTCTCTACCTGTCCAACACGAATCAGGCTGCCGTCTCCGATGATC
AGCTCGCCGAGCTCGATGCGTACGAGCAGGCCACCAAAGCCGGTCCGCTC
CATCGCTCGCGGTTGCTCGCCTCTCGCATTGGAAACATCGTGCACGCCCT
CGTGTGCACGGCCGGCGCCGTTAACAGTCGCGTGCAAATGCTTCGCGCCG
TCAATCTGCTACGAGAGGTGTTAAACGGCGCGGACTACGTGCTGTTGCGA
CACGCCATTCGCGGCTACACAGCCGCCTTAATTGAACACCAACCGACTAC
AAGGTATTCTTCTACACACAATCAAACCAGTTCGGTCGGTCCGCCGTTCC
TTGGACCGCTGGCAAACATCGCCGTCAACCGAGTGTCAGATCAACAGCTG
TCTGCGATTGCCGCAGATTCGCTCGCGTTTTTGTTGGGCTGTGCTTCTCT
TGATCATGGCGCTGACAAGAGCATCCCGTCTCACATTTGTGACCAGGCCG
ATGAGCAGACCAGACGAGTCATTGCCATGTTGATCACTGAAATCGTGCTC
ACTTCTTCGCCACCGGCCCTCAGCGCGCTTTCGAAGTTGCTCAGAAGAGA
TGCGGCGCGATACATGTTCTGCAAGAAGGACGGCGTCTCAACGCTGGCTT
CCATTTTGCATACCAAACCTGGTCGCAGTTTTACTGCCATTGGAGAACAA
GTAGCAAATGCTCAGAGCAATGCCGATCCGGTTGAAGCCTCGTATCACGC
CGTGTTCGCCGTGTGGATGCTCACATTTGCAAAGGACCCCAATGTTGTGC
ACTTGTTTTTGAAGAGCGTCGTATCATCTGGTCTTGTAGTGGTCTTAGCC
AAGCTACTCAATCACTCCAGCGGCCAAAGACTGAAGATTGCTCGCGTCAC
TCTGGCAAGTCTTCGCAATATGGCCACTGGTGACACCGACTTTCATCGAG
ATATAAGAAGGGATCTTGTTTCTACCGAAATTCCACAAACGCTGCAGCGA
ATCATGCACATGACTTCTGGCGCAGGTTCGCTTATAGGTAAGGATGATGA
AGCTATGGCTGATGCACTTGCGTTACACCAACTTCTTCTCAAGGAAAAGG
CATCCATGTCATCGCTGCAAGCATACGTCTCGGAAGTTAAGTTTGGTGCG
TTGCACTGGTCTCCAATACATACAGATAGTGTCTTCTGGGAAAAGAATGC
CGCTAAACTGGTTGAATCTCATCGAGAAGTGTTGGGTCTTTTGTCCGATA
TGATTTCGAGTGCAAAGACAACCGATGAAGAGAGAATAATCGCTTGTCAT
GATCTTGTGTGCATAATCCAATATTCTCCCACCGGACGTCATGCTGTCGC
ATCAATCCCTGGGCTCAAAAAGTGTCTCATGAAACTCATGACGTCTGCAT
CCAGTCCAGAACTGAGACTAAAGGCACTATGTTGTGTGCAACTCATCATG
TTGTCCGGACGGGTAGCCATGGTCTATAATCAATAA

protein sequence of Gcaud7224.t1

>Gcaud7224.t1 ID=Gcaud7224.t1|Name=Gcaud7224.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=512bp
MPANATVHTITTHSDMAWALYLSNTNQAAVSDDQLAELDAYEQATKAGPL
HRSRLLASRIGNIVHALVCTAGAVNSRVQMLRAVNLLREVLNGADYVLLR
HAIRGYTAALIEHQPTTRYSSTHNQTSSVGPPFLGPLANIAVNRVSDQQL
SAIAADSLAFLLGCASLDHGADKSIPSHICDQADEQTRRVIAMLITEIVL
TSSPPALSALSKLLRRDAARYMFCKKDGVSTLASILHTKPGRSFTAIGEQ
VANAQSNADPVEASYHAVFAVWMLTFAKDPNVVHLFLKSVVSSGLVVVLA
KLLNHSSGQRLKIARVTLASLRNMATGDTDFHRDIRRDLVSTEIPQTLQR
IMHMTSGAGSLIGKDDEAMADALALHQLLLKEKASMSSLQAYVSEVKFGA
LHWSPIHTDSVFWEKNAAKLVESHREVLGLLSDMISSAKTTDEERIIACH
DLVCIIQYSPTGRHAVASIPGLKKCLMKLMTSASSPELRLKALCCVQLIM
LSGRVAMVYNQ*

mRNA from alignment at NODE_726_length_19042_cov_4.198195:5029..6564+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7224.t1 ID=Gcaud7224.t1|Name=Gcaud7224.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at NODE_726_length_19042_cov_4.198195:5029..6564+ (Gracilaria caudata M_176_S67 male)
ATGCCAGCCAACGCCACCGTCCATACCATCACCACCCATTCCGACATGGC
GTGGGCTCTCTACCTGTCCAACACGAATCAGGCTGCCGTCTCCGATGATC
AGCTCGCCGAGCTCGATGCGTACGAGCAGGCCACCAAAGCCGGTCCGCTC
CATCGCTCGCGGTTGCTCGCCTCTCGCATTGGAAACATCGTGCACGCCCT
CGTGTGCACGGCCGGCGCCGTTAACAGTCGCGTGCAAATGCTTCGCGCCG
TCAATCTGCTACGAGAGGTGTTAAACGGCGCGGACTACGTGCTGTTGCGA
CACGCCATTCGCGGCTACACAGCCGCCTTAATTGAACACCAACCGACTAC
AAGGTATTCTTCTACACACAATCAAACCAGTTCGGTCGGTCCGCCGTTCC
TTGGACCGCTGGCAAACATCGCCGTCAACCGAGTGTCAGATCAACAGCTG
TCTGCGATTGCCGCAGATTCGCTCGCGTTTTTGTTGGGCTGTGCTTCTCT
TGATCATGGCGCTGACAAGAGCATCCCGTCTCACATTTGTGACCAGGCCG
ATGAGCAGACCAGACGAGTCATTGCCATGTTGATCACTGAAATCGTGCTC
ACTTCTTCGCCACCGGCCCTCAGCGCGCTTTCGAAGTTGCTCAGAAGAGA
TGCGGCGCGATACATGTTCTGCAAGAAGGACGGCGTCTCAACGCTGGCTT
CCATTTTGCATACCAAACCTGGTCGCAGTTTTACTGCCATTGGAGAACAA
GTAGCAAATGCTCAGAGCAATGCCGATCCGGTTGAAGCCTCGTATCACGC
CGTGTTCGCCGTGTGGATGCTCACATTTGCAAAGGACCCCAATGTTGTGC
ACTTGTTTTTGAAGAGCGTCGTATCATCTGGTCTTGTAGTGGTCTTAGCC
AAGCTACTCAATCACTCCAGCGGCCAAAGACTGAAGATTGCTCGCGTCAC
TCTGGCAAGTCTTCGCAATATGGCCACTGGTGACACCGACTTTCATCGAG
ATATAAGAAGGGATCTTGTTTCTACCGAAATTCCACAAACGCTGCAGCGA
ATCATGCACATGACTTCTGGCGCAGGTTCGCTTATAGGTAAGGATGATGA
AGCTATGGCTGATGCACTTGCGTTACACCAACTTCTTCTCAAGGAAAAGG
CATCCATGTCATCGCTGCAAGCATACGTCTCGGAAGTTAAGTTTGGTGCG
TTGCACTGGTCTCCAATACATACAGATAGTGTCTTCTGGGAAAAGAATGC
CGCTAAACTGGTTGAATCTCATCGAGAAGTGTTGGGTCTTTTGTCCGATA
TGATTTCGAGTGCAAAGACAACCGATGAAGAGAGAATAATCGCTTGTCAT
GATCTTGTGTGCATAATCCAATATTCTCCCACCGGACGTCATGCTGTCGC
ATCAATCCCTGGGCTCAAAAAGTGTCTCATGAAACTCATGACGTCTGCAT
CCAGTCCAGAACTGAGACTAAAGGCACTATGTTGTGTGCAACTCATCATG
TTGTCCGGACGGGTAGCCATGGTCTATAATCAATAA

Coding sequence (CDS) from alignment at NODE_726_length_19042_cov_4.198195:5029..6564+

>Gcaud7224.t1 ID=Gcaud7224.t1|Name=Gcaud7224.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1536bp|location=Sequence derived from alignment at NODE_726_length_19042_cov_4.198195:5029..6564+ (Gracilaria caudata M_176_S67 male)
ATGCCAGCCAACGCCACCGTCCATACCATCACCACCCATTCCGACATGGC
GTGGGCTCTCTACCTGTCCAACACGAATCAGGCTGCCGTCTCCGATGATC
AGCTCGCCGAGCTCGATGCGTACGAGCAGGCCACCAAAGCCGGTCCGCTC
CATCGCTCGCGGTTGCTCGCCTCTCGCATTGGAAACATCGTGCACGCCCT
CGTGTGCACGGCCGGCGCCGTTAACAGTCGCGTGCAAATGCTTCGCGCCG
TCAATCTGCTACGAGAGGTGTTAAACGGCGCGGACTACGTGCTGTTGCGA
CACGCCATTCGCGGCTACACAGCCGCCTTAATTGAACACCAACCGACTAC
AAGGTATTCTTCTACACACAATCAAACCAGTTCGGTCGGTCCGCCGTTCC
TTGGACCGCTGGCAAACATCGCCGTCAACCGAGTGTCAGATCAACAGCTG
TCTGCGATTGCCGCAGATTCGCTCGCGTTTTTGTTGGGCTGTGCTTCTCT
TGATCATGGCGCTGACAAGAGCATCCCGTCTCACATTTGTGACCAGGCCG
ATGAGCAGACCAGACGAGTCATTGCCATGTTGATCACTGAAATCGTGCTC
ACTTCTTCGCCACCGGCCCTCAGCGCGCTTTCGAAGTTGCTCAGAAGAGA
TGCGGCGCGATACATGTTCTGCAAGAAGGACGGCGTCTCAACGCTGGCTT
CCATTTTGCATACCAAACCTGGTCGCAGTTTTACTGCCATTGGAGAACAA
GTAGCAAATGCTCAGAGCAATGCCGATCCGGTTGAAGCCTCGTATCACGC
CGTGTTCGCCGTGTGGATGCTCACATTTGCAAAGGACCCCAATGTTGTGC
ACTTGTTTTTGAAGAGCGTCGTATCATCTGGTCTTGTAGTGGTCTTAGCC
AAGCTACTCAATCACTCCAGCGGCCAAAGACTGAAGATTGCTCGCGTCAC
TCTGGCAAGTCTTCGCAATATGGCCACTGGTGACACCGACTTTCATCGAG
ATATAAGAAGGGATCTTGTTTCTACCGAAATTCCACAAACGCTGCAGCGA
ATCATGCACATGACTTCTGGCGCAGGTTCGCTTATAGGTAAGGATGATGA
AGCTATGGCTGATGCACTTGCGTTACACCAACTTCTTCTCAAGGAAAAGG
CATCCATGTCATCGCTGCAAGCATACGTCTCGGAAGTTAAGTTTGGTGCG
TTGCACTGGTCTCCAATACATACAGATAGTGTCTTCTGGGAAAAGAATGC
CGCTAAACTGGTTGAATCTCATCGAGAAGTGTTGGGTCTTTTGTCCGATA
TGATTTCGAGTGCAAAGACAACCGATGAAGAGAGAATAATCGCTTGTCAT
GATCTTGTGTGCATAATCCAATATTCTCCCACCGGACGTCATGCTGTCGC
ATCAATCCCTGGGCTCAAAAAGTGTCTCATGAAACTCATGACGTCTGCAT
CCAGTCCAGAACTGAGACTAAAGGCACTATGTTGTGTGCAACTCATCATG
TTGTCCGGACGGGTAGCCATGGTCTATAATCAATAA