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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7206.t1.stop1 | Gcaud7206.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_476_length_24381_cov_4.240099 7272..7274 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7206.t1.intron1 | Gcaud7206.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_476_length_24381_cov_4.240099 7400..7837 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7206.t1.start1 | Gcaud7206.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_476_length_24381_cov_4.240099 8472..8474 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud7206.t1 ID=Gcaud7206.t1|Name=Gcaud7206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp
MKTLSALPILLLFCLTLADGDDSDSRRGPMKGIFIPRIPFTTTSTRTESC
LLLNGKNVISEPFPFDFEAADTLFACSEKTAGIVTHYPGKLSLFQSEFVC
EESPLISYSDEETSVDLSPFRLPFVCLEETCVFYRARGNRVFLSAAIIPE
EAPKLAARRDLRIPFLPTEVFYDFDDDMLKKFAEAQAEAFNKGVTGSIDL
RAMTYLGVTKSQSPEHDFQVLGVEQPEVEAEEKKTTVKCGKDGCMALIVD
GSGE* back to topspliced messenger RNA >Gcaud7206.t1 ID=Gcaud7206.t1|Name=Gcaud7206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:7272..8474- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAAACTCTTTCCGCCTTACCTATTCTTCTTCTCTTCTGTTTGACTTT
GGCAGATGGAGACGACTCAGATTCCCGCCGAGGACCCATGAAAGGCATCT
TCATACCAAGAATCCCGTTTACTACAACAAGCACAAGAACCGAATCTTGT
CTCCTTCTCAATGGCAAGAATGTCATCTCTGAACCATTCCCTTTCGACTT
CGAAGCAGCAGACACCCTATTCGCATGTTCCGAGAAAACCGCTGGAATAG
TTACCCATTATCCAGGCAAACTCAGTCTGTTCCAATCTGAATTTGTTTGC
GAAGAATCTCCGTTGATTTCGTACAGTGATGAAGAAACTTCTGTGGATCT
TTCGCCATTCCGTCTGCCGTTCGTTTGTCTTGAAGAAACTTGCGTGTTCT
ACCGAGCCAGGGGGAATAGGGTGTTTCTCTCTGCAGCAATTATTCCCGAA
GAGGCCCCGAAACTTGCCGCCAGGCGAGATTTAAGGATACCTTTTCTCCC
TACTGAGGTGTTTTACGACTTTGATGATGATATGCTTAAGAAGTTCGCAG
AAGCGCAAGCTGAGGCATTCAACAAAGGAGTTACGGGATCAATTGACCTT
CGAGCCATGACGTACCTAGGCGTTACGAAATCACAATCCCCCGAGCACGA
CTTTCAAGTTCTTGGCGTTGAACAGCCTGAGGTTGAAGCCGAAGAAAAGA
AAACAACAGTGAAATGTGGAAAAGACGGATGTATGGCGCTCATTGTTGAC
GGCAGCGGCGAATAG back to topprotein sequence of Gcaud7206.t1 >Gcaud7206.t1 ID=Gcaud7206.t1|Name=Gcaud7206.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MKTLSALPILLLFCLTLADGDDSDSRRGPMKGIFIPRIPFTTTSTRTESC
LLLNGKNVISEPFPFDFEAADTLFACSEKTAGIVTHYPGKLSLFQSEFVC
EESPLISYSDEETSVDLSPFRLPFVCLEETCVFYRARGNRVFLSAAIIPE
EAPKLAARRDLRIPFLPTEVFYDFDDDMLKKFAEAQAEAFNKGVTGSIDL
RAMTYLGVTKSQSPEHDFQVLGVEQPEVEAEEKKTTVKCGKDGCMALIVD
GSGE* back to topmRNA from alignment at NODE_476_length_24381_cov_4.240099:7272..8474- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud7206.t1 ID=Gcaud7206.t1|Name=Gcaud7206.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:7272..8474- (Gracilaria caudata M_176_S67 male)
ATGAAAACTCTTTCCGCCTTACCTATTCTTCTTCTCTTCTGTTTGACTTT
GGCAGATGGAGACGACTCAGATTCCCGCCGAGGACCCATGAAAGGCATCT
TCATACCAAGAATCCCGTTTACTACAACAAGCACAAGAACCGAATCTTGT
CTCCTTCTCAATGGCAAGAATGTCATCTCTGAACCATTCCCTTTCGACTT
CGAAGCAGCAGACACCCTATTCGCATGTTCCGAGAAAACCGCTGGAATAG
TTACCCATTATCCAGGCAAACTCAGTCTGTTCCAATCTGAATTTGTTTGC
GAAGAATCTCCGTTGATTTCGTACAGTGATGAAGAAACTTCTGTGGATCT
TTCGCCATTCCGTCTGCCGTTCGTTTGTCTTGAAGAAACTTGCGTGTTCT
ACCGAGCCAGGGGGAATAGGGTGTTTCTCTCTGCAGCAATTATTCCCGAA
GAGGCCCCGAAACTTGCCGCCAGGCGAGATTTAAGGATACCTTTTCTCCC
TACTGAGGTGTTTTACGACTTTGATGATGATATGCTTAAGAAGTTCGCAG
AAGCGCAAGCTGAGGCATTCAACAAAGGAGTTACGGGATCAATTGACCTT
CGAGCCATGACGTACCTAGGCGTTACGAAATCACAATGTAGGTTTCCGAG
GGTCTCTTGCACTTGCAGCCGAAGGTGAACTCGAAGAATCTGGACTTTCT
GCACTTAATTATGTACAATGAGAAAGAGAATGCGTTTTGATCGTTTTCGT
GATGGGTTGTCCTTGACAAAGATGTTTAGACGTATAGATCAAACTGGACC
TGCGTTTTAACTTGATCACGGTTAGTGTGAACAAGCCTATTTTTCGTATT
CTCTGTGATAAAGACAAATAAATACAACTGTTGTTCAGATTCGCATAAAT
CATGTTCATCGCTTGGAGCGCAAAGCTTCGCAAAGTAAGAAAGGTAGGAA
CGCTTCAACTCAGTGATGAGTTGCATCACGCTCCTGTGATGTTGGTGTTG
CTCAATGAGAGACTGTTTCAAAATGGATCTTTCTATGATTAAAGGTGAAG
TTCTGACGTTCTCTCTAACCGACAGCCCCCGAGCACGACTTTCAAGTTCT
TGGCGTTGAACAGCCTGAGGTTGAAGCCGAAGAAAAGAAAACAACAGTGA
AATGTGGAAAAGACGGATGTATGGCGCTCATTGTTGACGGCAGCGGCGAA
TAG back to topCoding sequence (CDS) from alignment at NODE_476_length_24381_cov_4.240099:7272..8474- >Gcaud7206.t1 ID=Gcaud7206.t1|Name=Gcaud7206.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=765bp|location=Sequence derived from alignment at NODE_476_length_24381_cov_4.240099:7272..8474- (Gracilaria caudata M_176_S67 male)
ATGAAAACTCTTTCCGCCTTACCTATTCTTCTTCTCTTCTGTTTGACTTT
GGCAGATGGAGACGACTCAGATTCCCGCCGAGGACCCATGAAAGGCATCT
TCATACCAAGAATCCCGTTTACTACAACAAGCACAAGAACCGAATCTTGT
CTCCTTCTCAATGGCAAGAATGTCATCTCTGAACCATTCCCTTTCGACTT
CGAAGCAGCAGACACCCTATTCGCATGTTCCGAGAAAACCGCTGGAATAG
TTACCCATTATCCAGGCAAACTCAGTCTGTTCCAATCTGAATTTGTTTGC
GAAGAATCTCCGTTGATTTCGTACAGTGATGAAGAAACTTCTGTGGATCT
TTCGCCATTCCGTCTGCCGTTCGTTTGTCTTGAAGAAACTTGCGTGTTCT
ACCGAGCCAGGGGGAATAGGGTGTTTCTCTCTGCAGCAATTATTCCCGAA
GAGGCCCCGAAACTTGCCGCCAGGCGAGATTTAAGGATACCTTTTCTCCC
TACTGAGGTGTTTTACGACTTTGATGATGATATGCTTAAGAAGTTCGCAG
AAGCGCAAGCTGAGGCATTCAACAAAGGAGTTACGGGATCAATTGACCTT
CGAGCCATGACGTACCTAGGCGTTACGAAATCACAATCCCCCGAGCACGA
CTTTCAAGTTCTTGGCGTTGAACAGCCTGAGGTTGAAGCCGAAGAAAAGA
AAACAACAGTGAAATGTGGAAAAGACGGATGTATGGCGCTCATTGTTGAC
GGCAGCGGCGAATAG back to top
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