Gcaud6736.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud6736.t1
Unique Name	Gcaud6736.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	300

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_622_length_20744_cov_5.309592	contig	NODE_622_length_20744_cov_5.309592:3716..4615 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD07330
Preferred name	Surf2
PFAMs	SURF2
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0016020,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071944
Evalue	2.78e-17
EggNOG OGs	2A8IF@1\|root,2QW1X@2759\|Eukaryota
Description	Surfeit locus protein 2 (SURF2)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud6736	Gcaud6736	Gracilaria caudata M_176_S67 male	gene	NODE_622_length_20744_cov_5.309592 3716..4615 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud6736.t1.stop1	Gcaud6736.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_622_length_20744_cov_5.309592 3716..3718 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud6736.t1.CDS1	Gcaud6736.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_622_length_20744_cov_5.309592 3716..4615 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud6736.t1.exon1	Gcaud6736.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_622_length_20744_cov_5.309592 3716..4615 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud6736.t1.start1	Gcaud6736.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_622_length_20744_cov_5.309592 4613..4615 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud6736.t1	Gcaud6736.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_622_length_20744_cov_5.309592 3716..4615 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_622_length_20744_cov_5.309592:3716..4615-
coding sequence from alignment at NODE_622_length_20744_cov_5.309592:3716..4615-

mRNA sequence

>Gcaud6736.t1 ID=Gcaud6736.t1|Name=Gcaud6736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp
MADKSDAVRYAEQHAGTTKLLPSGKLQFTHSGMEFPPHVDWNTLQSYATG
RAYRRGVARKKNDAYDFEQHVPYIVPHKQRDEKHFLYCTLTNKTLPRQRD
VLLNHTNGKRYKRRLEEAQQKQKQKQERMEKRNKKRQRKQEEDADADADA
DAMQTERAQGAQDVLDGLLSSDEESTSGDDQMEDEADADAEAEAEAEAEA
HERDEGSEGNAANSNDVDEVMQDHNDGEKTRVKASPNGVQRTLSGTLPAA
SERTTPQSVKARQFASIKRRRPRTPGPKRVRQARQKRKTEHAPAMENGT*

spliced messenger RNA

>Gcaud6736.t1 ID=Gcaud6736.t1|Name=Gcaud6736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_622_length_20744_cov_5.309592:3716..4615- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACAAGTCCGATGCCGTGAGGTATGCGGAGCAGCATGCGGGCAC
CACAAAGCTGCTTCCCAGCGGGAAGCTGCAATTCACGCACAGCGGCATGG
AGTTCCCCCCCCACGTGGACTGGAACACGCTGCAATCGTACGCAACTGGC
AGAGCGTATCGGCGAGGAGTGGCCAGAAAGAAAAACGACGCGTATGACTT
TGAGCAGCATGTGCCGTACATTGTGCCGCACAAACAGCGCGACGAAAAGC
ACTTTTTGTACTGCACGTTGACCAACAAGACGCTGCCTCGTCAGAGAGAT
GTGCTGCTGAATCACACAAACGGAAAGAGGTACAAGCGCAGGTTGGAGGA
GGCGCAGCAGAAGCAGAAGCAAAAGCAGGAACGAATGGAAAAGCGGAACA
AGAAACGCCAGCGCAAGCAGGAGGAGGATGCTGATGCTGATGCTGATGCT
GATGCGATGCAAACTGAGCGTGCGCAGGGTGCGCAGGACGTGTTGGATGG
CTTGCTGTCCAGTGACGAAGAGAGTACGAGCGGAGACGATCAGATGGAAG
ATGAAGCAGATGCAGATGCAGAGGCAGAGGCAGAGGCAGAGGCAGAAGCA
CACGAACGCGATGAAGGAAGCGAAGGGAACGCTGCGAACAGTAATGACGT
GGATGAAGTGATGCAAGACCACAATGACGGTGAGAAAACGCGCGTCAAAG
CTTCACCCAACGGCGTGCAGCGCACGCTGAGCGGCACGCTGCCAGCGGCG
AGTGAGCGCACGACGCCGCAGTCTGTGAAAGCTCGGCAGTTTGCGTCGAT
AAAGAGGCGTCGACCGAGGACGCCGGGGCCCAAGAGGGTGAGACAAGCAC
GGCAGAAACGAAAGACTGAACACGCTCCCGCCATGGAGAATGGCACATAA

protein sequence of Gcaud6736.t1

>Gcaud6736.t1 ID=Gcaud6736.t1|Name=Gcaud6736.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
MADKSDAVRYAEQHAGTTKLLPSGKLQFTHSGMEFPPHVDWNTLQSYATG
RAYRRGVARKKNDAYDFEQHVPYIVPHKQRDEKHFLYCTLTNKTLPRQRD
VLLNHTNGKRYKRRLEEAQQKQKQKQERMEKRNKKRQRKQEEDADADADA
DAMQTERAQGAQDVLDGLLSSDEESTSGDDQMEDEADADAEAEAEAEAEA
HERDEGSEGNAANSNDVDEVMQDHNDGEKTRVKASPNGVQRTLSGTLPAA
SERTTPQSVKARQFASIKRRRPRTPGPKRVRQARQKRKTEHAPAMENGT*

mRNA from alignment at NODE_622_length_20744_cov_5.309592:3716..4615-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud6736.t1 ID=Gcaud6736.t1|Name=Gcaud6736.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_622_length_20744_cov_5.309592:3716..4615- (Gracilaria caudata M_176_S67 male)
ATGGCGGACAAGTCCGATGCCGTGAGGTATGCGGAGCAGCATGCGGGCAC
CACAAAGCTGCTTCCCAGCGGGAAGCTGCAATTCACGCACAGCGGCATGG
AGTTCCCCCCCCACGTGGACTGGAACACGCTGCAATCGTACGCAACTGGC
AGAGCGTATCGGCGAGGAGTGGCCAGAAAGAAAAACGACGCGTATGACTT
TGAGCAGCATGTGCCGTACATTGTGCCGCACAAACAGCGCGACGAAAAGC
ACTTTTTGTACTGCACGTTGACCAACAAGACGCTGCCTCGTCAGAGAGAT
GTGCTGCTGAATCACACAAACGGAAAGAGGTACAAGCGCAGGTTGGAGGA
GGCGCAGCAGAAGCAGAAGCAAAAGCAGGAACGAATGGAAAAGCGGAACA
AGAAACGCCAGCGCAAGCAGGAGGAGGATGCTGATGCTGATGCTGATGCT
GATGCGATGCAAACTGAGCGTGCGCAGGGTGCGCAGGACGTGTTGGATGG
CTTGCTGTCCAGTGACGAAGAGAGTACGAGCGGAGACGATCAGATGGAAG
ATGAAGCAGATGCAGATGCAGAGGCAGAGGCAGAGGCAGAGGCAGAAGCA
CACGAACGCGATGAAGGAAGCGAAGGGAACGCTGCGAACAGTAATGACGT
GGATGAAGTGATGCAAGACCACAATGACGGTGAGAAAACGCGCGTCAAAG
CTTCACCCAACGGCGTGCAGCGCACGCTGAGCGGCACGCTGCCAGCGGCG
AGTGAGCGCACGACGCCGCAGTCTGTGAAAGCTCGGCAGTTTGCGTCGAT
AAAGAGGCGTCGACCGAGGACGCCGGGGCCCAAGAGGGTGAGACAAGCAC
GGCAGAAACGAAAGACTGAACACGCTCCCGCCATGGAGAATGGCACATAA

Coding sequence (CDS) from alignment at NODE_622_length_20744_cov_5.309592:3716..4615-

>Gcaud6736.t1 ID=Gcaud6736.t1|Name=Gcaud6736.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=900bp|location=Sequence derived from alignment at NODE_622_length_20744_cov_5.309592:3716..4615- (Gracilaria caudata M_176_S67 male)
ATGGCGGACAAGTCCGATGCCGTGAGGTATGCGGAGCAGCATGCGGGCAC
CACAAAGCTGCTTCCCAGCGGGAAGCTGCAATTCACGCACAGCGGCATGG
AGTTCCCCCCCCACGTGGACTGGAACACGCTGCAATCGTACGCAACTGGC
AGAGCGTATCGGCGAGGAGTGGCCAGAAAGAAAAACGACGCGTATGACTT
TGAGCAGCATGTGCCGTACATTGTGCCGCACAAACAGCGCGACGAAAAGC
ACTTTTTGTACTGCACGTTGACCAACAAGACGCTGCCTCGTCAGAGAGAT
GTGCTGCTGAATCACACAAACGGAAAGAGGTACAAGCGCAGGTTGGAGGA
GGCGCAGCAGAAGCAGAAGCAAAAGCAGGAACGAATGGAAAAGCGGAACA
AGAAACGCCAGCGCAAGCAGGAGGAGGATGCTGATGCTGATGCTGATGCT
GATGCGATGCAAACTGAGCGTGCGCAGGGTGCGCAGGACGTGTTGGATGG
CTTGCTGTCCAGTGACGAAGAGAGTACGAGCGGAGACGATCAGATGGAAG
ATGAAGCAGATGCAGATGCAGAGGCAGAGGCAGAGGCAGAGGCAGAAGCA
CACGAACGCGATGAAGGAAGCGAAGGGAACGCTGCGAACAGTAATGACGT
GGATGAAGTGATGCAAGACCACAATGACGGTGAGAAAACGCGCGTCAAAG
CTTCACCCAACGGCGTGCAGCGCACGCTGAGCGGCACGCTGCCAGCGGCG
AGTGAGCGCACGACGCCGCAGTCTGTGAAAGCTCGGCAGTTTGCGTCGAT
AAAGAGGCGTCGACCGAGGACGCCGGGGCCCAAGAGGGTGAGACAAGCAC
GGCAGAAACGAAAGACTGAACACGCTCCCGCCATGGAGAATGGCACATAA