Gcaud3806.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3806.t1
Unique NameGcaud3806.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_71_length_56537_cov_4.318092contigNODE_71_length_56537_cov_4.318092:41101..41511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005645830.1
Max annot lvl2759|Eukaryota
Evalue2.53e-07
EggNOG OGs2EA86@1|root,2SGH1@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3806Gcaud3806Gracilaria caudata M_176_S67 malegeneNODE_71_length_56537_cov_4.318092 41101..41511 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3806.t1.stop1Gcaud3806.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_71_length_56537_cov_4.318092 41101..41103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3806.t1.CDS1Gcaud3806.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_71_length_56537_cov_4.318092 41101..41511 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3806.t1.exon1Gcaud3806.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_71_length_56537_cov_4.318092 41101..41511 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3806.t1.start1Gcaud3806.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_71_length_56537_cov_4.318092 41509..41511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3806.t1Gcaud3806.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_71_length_56537_cov_4.318092 41101..41511 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3806.t1 ID=Gcaud3806.t1|Name=Gcaud3806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=137bp
MRPRNIIIKNLAEVEAAKAARPAVMKPQKVNGKWHMPKMSAKAIARRRKQ
YLKAGREWKWDIPHKIVEKRVPFKGHLRELRYRQRQEEIARCMARMPKLI
EDYRKRTAERRRQKKYEGIEGLLRTPREIPGVKSRF*
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spliced messenger RNA

>Gcaud3806.t1 ID=Gcaud3806.t1|Name=Gcaud3806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=411bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:41101..41511- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACCGAGGAACATCATAATCAAAAATCTCGCGGAAGTCGAGGCCGC
TAAAGCGGCCCGACCAGCCGTAATGAAGCCTCAAAAGGTGAACGGAAAAT
GGCACATGCCCAAGATGTCAGCTAAAGCTATTGCCCGTCGTCGAAAACAG
TACTTGAAGGCTGGTCGGGAGTGGAAGTGGGATATTCCCCATAAGATCGT
AGAGAAAAGAGTCCCGTTCAAAGGCCATCTTCGGGAACTTAGATATCGAC
AAAGACAAGAGGAAATCGCTCGTTGCATGGCACGCATGCCTAAGCTGATC
GAGGATTACAGAAAGAGAACGGCTGAAAGACGAAGGCAAAAGAAGTATGA
AGGGATCGAAGGCCTGCTACGCACACCTCGAGAGATACCGGGCGTCAAAT
CTCGCTTTTGA
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protein sequence of Gcaud3806.t1

>Gcaud3806.t1 ID=Gcaud3806.t1|Name=Gcaud3806.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=137bp
MRPRNIIIKNLAEVEAAKAARPAVMKPQKVNGKWHMPKMSAKAIARRRKQ
YLKAGREWKWDIPHKIVEKRVPFKGHLRELRYRQRQEEIARCMARMPKLI
EDYRKRTAERRRQKKYEGIEGLLRTPREIPGVKSRF*
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mRNA from alignment at NODE_71_length_56537_cov_4.318092:41101..41511-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3806.t1 ID=Gcaud3806.t1|Name=Gcaud3806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=411bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:41101..41511- (Gracilaria caudata M_176_S67 male)
ATGCGACCGAGGAACATCATAATCAAAAATCTCGCGGAAGTCGAGGCCGC
TAAAGCGGCCCGACCAGCCGTAATGAAGCCTCAAAAGGTGAACGGAAAAT
GGCACATGCCCAAGATGTCAGCTAAAGCTATTGCCCGTCGTCGAAAACAG
TACTTGAAGGCTGGTCGGGAGTGGAAGTGGGATATTCCCCATAAGATCGT
AGAGAAAAGAGTCCCGTTCAAAGGCCATCTTCGGGAACTTAGATATCGAC
AAAGACAAGAGGAAATCGCTCGTTGCATGGCACGCATGCCTAAGCTGATC
GAGGATTACAGAAAGAGAACGGCTGAAAGACGAAGGCAAAAGAAGTATGA
AGGGATCGAAGGCCTGCTACGCACACCTCGAGAGATACCGGGCGTCAAAT
CTCGCTTTTGA
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Coding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:41101..41511-

>Gcaud3806.t1 ID=Gcaud3806.t1|Name=Gcaud3806.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=411bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:41101..41511- (Gracilaria caudata M_176_S67 male)
ATGCGACCGAGGAACATCATAATCAAAAATCTCGCGGAAGTCGAGGCCGC
TAAAGCGGCCCGACCAGCCGTAATGAAGCCTCAAAAGGTGAACGGAAAAT
GGCACATGCCCAAGATGTCAGCTAAAGCTATTGCCCGTCGTCGAAAACAG
TACTTGAAGGCTGGTCGGGAGTGGAAGTGGGATATTCCCCATAAGATCGT
AGAGAAAAGAGTCCCGTTCAAAGGCCATCTTCGGGAACTTAGATATCGAC
AAAGACAAGAGGAAATCGCTCGTTGCATGGCACGCATGCCTAAGCTGATC
GAGGATTACAGAAAGAGAACGGCTGAAAGACGAAGGCAAAAGAAGTATGA
AGGGATCGAAGGCCTGCTACGCACACCTCGAGAGATACCGGGCGTCAAAT
CTCGCTTTTGA
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