Gcaud3782.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3782.t1
Unique NameGcaud3782.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_55_length_62747_cov_4.797082contigNODE_55_length_62747_cov_4.797082:3496..4389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3782Gcaud3782Gracilaria caudata M_176_S67 malegeneNODE_55_length_62747_cov_4.797082 3496..4389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3782.t1Gcaud3782.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_55_length_62747_cov_4.797082 3496..4389 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3782.t1.start1Gcaud3782.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_55_length_62747_cov_4.797082 3496..3498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3782.t1.CDS1Gcaud3782.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_55_length_62747_cov_4.797082 3496..3587 +
Gcaud3782.t1.CDS2Gcaud3782.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_55_length_62747_cov_4.797082 3841..3938 +
Gcaud3782.t1.CDS3Gcaud3782.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_55_length_62747_cov_4.797082 3977..4389 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3782.t1.exon1Gcaud3782.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_55_length_62747_cov_4.797082 3496..3587 +
Gcaud3782.t1.exon2Gcaud3782.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_55_length_62747_cov_4.797082 3841..3938 +
Gcaud3782.t1.exon3Gcaud3782.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_55_length_62747_cov_4.797082 3977..4389 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3782.t1.intron1Gcaud3782.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_55_length_62747_cov_4.797082 3588..3840 +
Gcaud3782.t1.intron2Gcaud3782.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_55_length_62747_cov_4.797082 3939..3976 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3782.t1.stop1Gcaud3782.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_55_length_62747_cov_4.797082 4387..4389 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3782.t1 ID=Gcaud3782.t1|Name=Gcaud3782.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=201bp
MIVQISKEHDTPYPACELPMLRSPEHCDSSQEQTLSYKRNISRSKAGPML
DLTAHLFGPGLGILVKCDDEVMHATADGRTPDWAQTKRRRRALAQTWSDI
PDLVNLMVSFSVDESQLKAKESSRAPLDISSPTSISHGNKTYTTGKLVKK
LNFEDSNIVGGDAQSDREATRKVTGIEDSLLDSFRRVKIEQGNDEAEEIE
*
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spliced messenger RNA

>Gcaud3782.t1 ID=Gcaud3782.t1|Name=Gcaud3782.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=603bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:3496..4389+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGTGCAGATTTCAAAGGAGCACGACACCCCGTACCCAGCTTGCGA
ACTTCCCATGTTAAGATCTCCGGAACACTGCGATAGCTCTCAAGAACAGA
CGTTGTCGTACAAGCGGAACATATCAAGATCCAAAGCTGGCCCCATGCTC
GACTTGACTGCCCATCTCTTTGGACCGGGTCTCGGAATCCTGGTGAAGTG
TGATGACGAGGTGATGCATGCGACTGCAGACGGGCGTACCCCAGACTGGG
CGCAGACCAAACGCCGTCGCCGGGCCTTGGCGCAAACTTGGTCGGATATT
CCAGATCTTGTGAATTTGATGGTCTCGTTCTCTGTCGATGAAAGCCAGTT
GAAAGCTAAAGAAAGCTCACGCGCACCTCTTGATATTTCATCCCCCACAT
CTATCAGTCATGGCAACAAAACTTATACAACTGGAAAGTTAGTGAAGAAG
TTGAACTTCGAAGACAGCAACATCGTTGGCGGAGATGCACAGAGTGACCG
AGAAGCAACTAGAAAAGTTACAGGGATTGAAGACTCATTGCTCGACAGTT
TCCGAAGGGTAAAGATTGAACAGGGGAACGATGAAGCAGAAGAGATCGAG
TGA
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protein sequence of Gcaud3782.t1

>Gcaud3782.t1 ID=Gcaud3782.t1|Name=Gcaud3782.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=201bp
MIVQISKEHDTPYPACELPMLRSPEHCDSSQEQTLSYKRNISRSKAGPML
DLTAHLFGPGLGILVKCDDEVMHATADGRTPDWAQTKRRRRALAQTWSDI
PDLVNLMVSFSVDESQLKAKESSRAPLDISSPTSISHGNKTYTTGKLVKK
LNFEDSNIVGGDAQSDREATRKVTGIEDSLLDSFRRVKIEQGNDEAEEIE
*
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mRNA from alignment at NODE_55_length_62747_cov_4.797082:3496..4389+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3782.t1 ID=Gcaud3782.t1|Name=Gcaud3782.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:3496..4389+ (Gracilaria caudata M_176_S67 male)
ATGATAGTGCAGATTTCAAAGGAGCACGACACCCCGTACCCAGCTTGCGA
ACTTCCCATGTTAAGATCTCCGGAACACTGCGATAGCTCTCAGTAGGTTG
AGCAGGAAACCAATATTTGAACCTGCGACTCACTGATAGTGTGTCTTCGC
GCTGGGCAGAAGTGTACATCCTTGAAAACCATTCTAGTTACAGAACCCGC
ACAGAGCTTACCTATCTGCAGTGCTTCCCAATATACGCTTCAATCTTGCT
TCCACCCAGTTCACACTGATCCACGCTTTGTCTTATCGCGCCTCTCGCTT
CGCAGTGCAGAATCCTAACCGATTCTTTTACTTCATAACATGCAGAGAAC
AGACGTTGTCGTACAAGCGGAACATATCAAGATCCAAAGCTGGCCCCATG
CTCGACTTGACTGCCCATCTCTTTGGACCGGGTCTCGGAATCCGTGTGCT
CAATGTTACTGTTATGTTTGTGACGTACCAGTGGTGAAGTGTGATGACGA
GGTGATGCATGCGACTGCAGACGGGCGTACCCCAGACTGGGCGCAGACCA
AACGCCGTCGCCGGGCCTTGGCGCAAACTTGGTCGGATATTCCAGATCTT
GTGAATTTGATGGTCTCGTTCTCTGTCGATGAAAGCCAGTTGAAAGCTAA
AGAAAGCTCACGCGCACCTCTTGATATTTCATCCCCCACATCTATCAGTC
ATGGCAACAAAACTTATACAACTGGAAAGTTAGTGAAGAAGTTGAACTTC
GAAGACAGCAACATCGTTGGCGGAGATGCACAGAGTGACCGAGAAGCAAC
TAGAAAAGTTACAGGGATTGAAGACTCATTGCTCGACAGTTTCCGAAGGG
TAAAGATTGAACAGGGGAACGATGAAGCAGAAGAGATCGAGTGA
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Coding sequence (CDS) from alignment at NODE_55_length_62747_cov_4.797082:3496..4389+

>Gcaud3782.t1 ID=Gcaud3782.t1|Name=Gcaud3782.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=603bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:3496..4389+ (Gracilaria caudata M_176_S67 male)
ATGATAGTGCAGATTTCAAAGGAGCACGACACCCCGTACCCAGCTTGCGA
ACTTCCCATGTTAAGATCTCCGGAACACTGCGATAGCTCTCAAGAACAGA
CGTTGTCGTACAAGCGGAACATATCAAGATCCAAAGCTGGCCCCATGCTC
GACTTGACTGCCCATCTCTTTGGACCGGGTCTCGGAATCCTGGTGAAGTG
TGATGACGAGGTGATGCATGCGACTGCAGACGGGCGTACCCCAGACTGGG
CGCAGACCAAACGCCGTCGCCGGGCCTTGGCGCAAACTTGGTCGGATATT
CCAGATCTTGTGAATTTGATGGTCTCGTTCTCTGTCGATGAAAGCCAGTT
GAAAGCTAAAGAAAGCTCACGCGCACCTCTTGATATTTCATCCCCCACAT
CTATCAGTCATGGCAACAAAACTTATACAACTGGAAAGTTAGTGAAGAAG
TTGAACTTCGAAGACAGCAACATCGTTGGCGGAGATGCACAGAGTGACCG
AGAAGCAACTAGAAAAGTTACAGGGATTGAAGACTCATTGCTCGACAGTT
TCCGAAGGGTAAAGATTGAACAGGGGAACGATGAAGCAGAAGAGATCGAG
TGA
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