Gcaud3763.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3763.t1
Unique Name	Gcaud3763.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	318

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_94_length_52825_cov_4.981075	contig	NODE_94_length_52825_cov_4.981075:13631..14666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	661367.LLO_0997
PFAMs	AAA_11,AAA_12,RNase_H_2
Max annot lvl	118969\|Legionellales
Evalue	4.19e-16
EggNOG OGs	COG1112@1\|root,COG2251@1\|root,COG1112@2\|Bacteria,COG2251@2\|Bacteria,1MWW9@1224\|Proteobacteria,1RZXX@1236\|Gammaproteobacteria,1JCQQ@118969\|Legionellales
Description	AAA domain
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3763	Gcaud3763	Gracilaria caudata M_176_S67 male	gene	NODE_94_length_52825_cov_4.981075 13631..17671 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3763.t1	Gcaud3763.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_94_length_52825_cov_4.981075 13631..14666 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3763.t1.start1	Gcaud3763.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_94_length_52825_cov_4.981075 13631..13633 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3763.t1.CDS1	Gcaud3763.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_94_length_52825_cov_4.981075 13631..14566 +
Gcaud3763.t1.CDS2	Gcaud3763.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_94_length_52825_cov_4.981075 14649..14666 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3763.t1.exon1	Gcaud3763.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_94_length_52825_cov_4.981075 13631..14566 +
Gcaud3763.t1.exon2	Gcaud3763.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_94_length_52825_cov_4.981075 14649..14666 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3763.t1.intron1	Gcaud3763.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_94_length_52825_cov_4.981075 14567..14648 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3763.t1.stop1	Gcaud3763.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_94_length_52825_cov_4.981075 14664..14666 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_94_length_52825_cov_4.981075:13631..14666+
coding sequence from alignment at NODE_94_length_52825_cov_4.981075:13631..14666+

mRNA sequence

>Gcaud3763.t1 ID=Gcaud3763.t1|Name=Gcaud3763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp
MLVETRWKTSLFQLALFRNPWRRISNGLRFLSFPWFRKQTNQVQCLQTRE
HTANPELRSKPTRSPYDLVLFRRSRFVAHLNELSRRRSDSAPPRDESTAL
ELALKSAGNAHEERVVAFLENILSISAYRIPFAHPDRYNMTIEAIRRREP
IIAGAALHDDAFAGYADVLILSALDPYLTETQPANVDPNAYIVCEIKLSS
FSTMDFLLQTAAYASMLSIIHKRLDIRHPSHAYLWLGSPENPPIRLDYRD
LKYFFRRVKKDFLTFSQSFDESAPLPEPDAPLQMLSPWKTFAMETLNEAD
SLHLIAGIRQSQCIEVN*

spliced messenger RNA

>Gcaud3763.t1 ID=Gcaud3763.t1|Name=Gcaud3763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=954bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:13631..14666+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGTCGAGACAAGATGGAAAACATCCTTGTTCCAATTGGCCCTCTT
CAGGAATCCATGGCGACGAATTTCAAATGGTCTACGTTTTCTTTCCTTCC
CATGGTTTCGCAAGCAAACGAATCAAGTACAGTGCCTCCAGACGAGAGAG
CATACTGCTAACCCCGAGCTCCGATCGAAACCCACAAGGAGCCCGTATGA
TCTTGTTTTGTTCCGTCGTTCTCGATTTGTGGCACATCTGAACGAACTGT
CACGTCGTCGGAGTGATTCTGCGCCTCCTCGAGATGAATCTACCGCACTT
GAATTGGCATTGAAATCAGCAGGAAACGCGCATGAAGAACGCGTGGTAGC
GTTCCTGGAGAATATTCTCTCCATTAGCGCATACCGCATTCCGTTTGCTC
ATCCTGATCGTTATAACATGACCATCGAAGCTATTCGTCGTCGCGAACCC
ATTATCGCTGGCGCTGCTCTCCATGACGACGCATTTGCAGGATATGCTGA
TGTACTCATCTTATCCGCTCTTGATCCGTATCTGACAGAGACACAACCTG
CAAATGTTGACCCAAATGCCTACATTGTTTGCGAAATCAAACTGTCATCC
TTTTCCACGATGGACTTTCTGCTGCAAACAGCTGCCTATGCTTCCATGCT
AAGCATTATTCACAAAAGATTAGATATCAGACACCCAAGTCACGCATATC
TCTGGCTAGGGTCACCTGAGAATCCACCGATTCGCCTTGACTACCGCGAC
CTCAAGTACTTCTTTCGGAGGGTGAAGAAAGATTTTCTAACGTTCAGCCA
AAGCTTTGATGAGAGTGCCCCACTCCCGGAACCTGATGCGCCTCTCCAAA
TGTTATCACCTTGGAAAACCTTCGCCATGGAAACCCTTAATGAAGCGGAT
TCTCTTCATTTAATCGCCGGTATTCGACAGTCCCAATGCATCGAGGTGAA
TTGA

protein sequence of Gcaud3763.t1

>Gcaud3763.t1 ID=Gcaud3763.t1|Name=Gcaud3763.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=318bp
MLVETRWKTSLFQLALFRNPWRRISNGLRFLSFPWFRKQTNQVQCLQTRE
HTANPELRSKPTRSPYDLVLFRRSRFVAHLNELSRRRSDSAPPRDESTAL
ELALKSAGNAHEERVVAFLENILSISAYRIPFAHPDRYNMTIEAIRRREP
IIAGAALHDDAFAGYADVLILSALDPYLTETQPANVDPNAYIVCEIKLSS
FSTMDFLLQTAAYASMLSIIHKRLDIRHPSHAYLWLGSPENPPIRLDYRD
LKYFFRRVKKDFLTFSQSFDESAPLPEPDAPLQMLSPWKTFAMETLNEAD
SLHLIAGIRQSQCIEVN*

mRNA from alignment at NODE_94_length_52825_cov_4.981075:13631..14666+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3763.t1 ID=Gcaud3763.t1|Name=Gcaud3763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1036bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:13631..14666+ (Gracilaria caudata M_176_S67 male)
ATGTTAGTCGAGACAAGATGGAAAACATCCTTGTTCCAATTGGCCCTCTT
CAGGAATCCATGGCGACGAATTTCAAATGGTCTACGTTTTCTTTCCTTCC
CATGGTTTCGCAAGCAAACGAATCAAGTACAGTGCCTCCAGACGAGAGAG
CATACTGCTAACCCCGAGCTCCGATCGAAACCCACAAGGAGCCCGTATGA
TCTTGTTTTGTTCCGTCGTTCTCGATTTGTGGCACATCTGAACGAACTGT
CACGTCGTCGGAGTGATTCTGCGCCTCCTCGAGATGAATCTACCGCACTT
GAATTGGCATTGAAATCAGCAGGAAACGCGCATGAAGAACGCGTGGTAGC
GTTCCTGGAGAATATTCTCTCCATTAGCGCATACCGCATTCCGTTTGCTC
ATCCTGATCGTTATAACATGACCATCGAAGCTATTCGTCGTCGCGAACCC
ATTATCGCTGGCGCTGCTCTCCATGACGACGCATTTGCAGGATATGCTGA
TGTACTCATCTTATCCGCTCTTGATCCGTATCTGACAGAGACACAACCTG
CAAATGTTGACCCAAATGCCTACATTGTTTGCGAAATCAAACTGTCATCC
TTTTCCACGATGGACTTTCTGCTGCAAACAGCTGCCTATGCTTCCATGCT
AAGCATTATTCACAAAAGATTAGATATCAGACACCCAAGTCACGCATATC
TCTGGCTAGGGTCACCTGAGAATCCACCGATTCGCCTTGACTACCGCGAC
CTCAAGTACTTCTTTCGGAGGGTGAAGAAAGATTTTCTAACGTTCAGCCA
AAGCTTTGATGAGAGTGCCCCACTCCCGGAACCTGATGCGCCTCTCCAAA
TGTTATCACCTTGGAAAACCTTCGCCATGGAAACCCTTAATGAAGCGGAT
TCTCTTCATTTAATCGCCGGTATTCGACAGTCCCAAGTAGAAAAGATCAG
ATCCGTGTGTGGTGTATCTACACTTAGAGATTTCGCAAGCATGCAACTAA
ATGAATTAAATGGTTTAGTGCATCGAGGTGAATTGA

Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:13631..14666+

>Gcaud3763.t1 ID=Gcaud3763.t1|Name=Gcaud3763.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=954bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:13631..14666+ (Gracilaria caudata M_176_S67 male)
ATGTTAGTCGAGACAAGATGGAAAACATCCTTGTTCCAATTGGCCCTCTT
CAGGAATCCATGGCGACGAATTTCAAATGGTCTACGTTTTCTTTCCTTCC
CATGGTTTCGCAAGCAAACGAATCAAGTACAGTGCCTCCAGACGAGAGAG
CATACTGCTAACCCCGAGCTCCGATCGAAACCCACAAGGAGCCCGTATGA
TCTTGTTTTGTTCCGTCGTTCTCGATTTGTGGCACATCTGAACGAACTGT
CACGTCGTCGGAGTGATTCTGCGCCTCCTCGAGATGAATCTACCGCACTT
GAATTGGCATTGAAATCAGCAGGAAACGCGCATGAAGAACGCGTGGTAGC
GTTCCTGGAGAATATTCTCTCCATTAGCGCATACCGCATTCCGTTTGCTC
ATCCTGATCGTTATAACATGACCATCGAAGCTATTCGTCGTCGCGAACCC
ATTATCGCTGGCGCTGCTCTCCATGACGACGCATTTGCAGGATATGCTGA
TGTACTCATCTTATCCGCTCTTGATCCGTATCTGACAGAGACACAACCTG
CAAATGTTGACCCAAATGCCTACATTGTTTGCGAAATCAAACTGTCATCC
TTTTCCACGATGGACTTTCTGCTGCAAACAGCTGCCTATGCTTCCATGCT
AAGCATTATTCACAAAAGATTAGATATCAGACACCCAAGTCACGCATATC
TCTGGCTAGGGTCACCTGAGAATCCACCGATTCGCCTTGACTACCGCGAC
CTCAAGTACTTCTTTCGGAGGGTGAAGAAAGATTTTCTAACGTTCAGCCA
AAGCTTTGATGAGAGTGCCCCACTCCCGGAACCTGATGCGCCTCTCCAAA
TGTTATCACCTTGGAAAACCTTCGCCATGGAAACCCTTAATGAAGCGGAT
TCTCTTCATTTAATCGCCGGTATTCGACAGTCCCAATGCATCGAGGTGAA
TTGA