Gcaud3664.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3664.t1
Unique Name	Gcaud3664.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	313

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_78_length_55752_cov_4.650078	contig	NODE_78_length_55752_cov_4.650078:46561..47591 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3664	Gcaud3664	Gracilaria caudata M_176_S67 male	gene	NODE_78_length_55752_cov_4.650078 46561..47591 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3664.t1	Gcaud3664.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_78_length_55752_cov_4.650078 46561..47591 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3664.t1.stop1	Gcaud3664.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_78_length_55752_cov_4.650078 46561..46563 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3664.t1.CDS1	Gcaud3664.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 46561..47117 -
Gcaud3664.t1.CDS2	Gcaud3664.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 47210..47591 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3664.t1.exon1	Gcaud3664.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 46561..47117 -
Gcaud3664.t1.exon2	Gcaud3664.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 47210..47591 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3664.t1.intron1	Gcaud3664.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_78_length_55752_cov_4.650078 47118..47209 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3664.t1.start1	Gcaud3664.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_78_length_55752_cov_4.650078 47589..47591 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_78_length_55752_cov_4.650078:46561..47591-
coding sequence from alignment at NODE_78_length_55752_cov_4.650078:46561..47591-

mRNA sequence

>Gcaud3664.t1 ID=Gcaud3664.t1|Name=Gcaud3664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp
MRRNRSSSYAESSDDDFALSDDEKSSSRLKRPRRTTTRPRRLAVRSPQSS
SFQLDENDDDDDVICVPDSLEQHNEQQPPPFTNIHSDNAPHDPSADNTME
SAPKSDAPPTADESEKKPIDAPPKSSSEKHSEQSKRSSRVLKKRKTYVIS
DSESEASAHEDDDAYNSADDSPPEEDDDVVESDFELSPKRVTKKRKATTA
AKRSTPPKKGKAQVKTRAPPANTAARNIKRSPAAAQRSVAKQKNTRATLS
SASGKKRLGARIPVDSSALSSIASSAHKPRRPSLKPFPSPLIRSGLSRNA
SVPPLHAYLKKN*

spliced messenger RNA

>Gcaud3664.t1 ID=Gcaud3664.t1|Name=Gcaud3664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:46561..47591- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGAAACCGATCCTCGAGCTATGCCGAATCCTCCGACGACGACTT
TGCTCTCTCGGACGACGAAAAGTCCTCGTCCCGTTTGAAACGGCCTCGCC
GCACTACCACCAGGCCGCGTCGCCTCGCCGTTCGTTCCCCGCAGTCTAGC
AGTTTTCAACTGGACGAAAACGACGACGATGACGATGTGATTTGTGTCCC
CGATTCATTGGAACAGCACAACGAGCAACAACCGCCGCCGTTCACCAACA
TTCATTCGGATAACGCTCCACACGATCCTAGCGCGGACAACACCATGGAG
AGCGCGCCCAAATCGGATGCGCCGCCCACTGCGGATGAAAGCGAGAAAAA
GCCGATCGACGCCCCGCCAAAATCATCAAGCGAGAAACACAGTGAACAAT
CAAAACGCTCGTCACGGGTGCTCAAGAAGCGCAAAACGTACGTCATCTCA
GATTCAGAAAGCGAGGCCTCCGCTCACGAAGATGACGACGCATACAACAG
CGCAGATGATTCGCCGCCGGAGGAAGACGATGATGTGGTTGAAAGTGACT
TCGAACTATCTCCAAAGCGTGTCACAAAGAAGAGAAAAGCAACCACTGCC
GCAAAACGATCCACTCCGCCAAAGAAGGGAAAGGCTCAAGTGAAAACAAG
AGCACCGCCTGCAAACACCGCTGCGAGGAACATAAAGCGCTCCCCCGCCG
CTGCACAGAGAAGCGTAGCAAAGCAGAAGAACACACGTGCAACCTTATCT
TCTGCATCTGGCAAGAAACGGCTGGGAGCGCGAATACCAGTCGACTCTTC
CGCCTTATCTTCCATTGCCAGCTCTGCGCACAAACCAAGACGTCCTTCTC
TGAAACCCTTCCCGTCGCCGCTCATTCGATCTGGGCTGTCCAGAAACGCA
TCCGTACCTCCACTCCATGCTTACCTCAAGAAAAACTGA

protein sequence of Gcaud3664.t1

>Gcaud3664.t1 ID=Gcaud3664.t1|Name=Gcaud3664.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MRRNRSSSYAESSDDDFALSDDEKSSSRLKRPRRTTTRPRRLAVRSPQSS
SFQLDENDDDDDVICVPDSLEQHNEQQPPPFTNIHSDNAPHDPSADNTME
SAPKSDAPPTADESEKKPIDAPPKSSSEKHSEQSKRSSRVLKKRKTYVIS
DSESEASAHEDDDAYNSADDSPPEEDDDVVESDFELSPKRVTKKRKATTA
AKRSTPPKKGKAQVKTRAPPANTAARNIKRSPAAAQRSVAKQKNTRATLS
SASGKKRLGARIPVDSSALSSIASSAHKPRRPSLKPFPSPLIRSGLSRNA
SVPPLHAYLKKN*

mRNA from alignment at NODE_78_length_55752_cov_4.650078:46561..47591-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3664.t1 ID=Gcaud3664.t1|Name=Gcaud3664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1031bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:46561..47591- (Gracilaria caudata M_176_S67 male)
ATGCGCCGAAACCGATCCTCGAGCTATGCCGAATCCTCCGACGACGACTT
TGCTCTCTCGGACGACGAAAAGTCCTCGTCCCGTTTGAAACGGCCTCGCC
GCACTACCACCAGGCCGCGTCGCCTCGCCGTTCGTTCCCCGCAGTCTAGC
AGTTTTCAACTGGACGAAAACGACGACGATGACGATGTGATTTGTGTCCC
CGATTCATTGGAACAGCACAACGAGCAACAACCGCCGCCGTTCACCAACA
TTCATTCGGATAACGCTCCACACGATCCTAGCGCGGACAACACCATGGAG
AGCGCGCCCAAATCGGATGCGCCGCCCACTGCGGATGAAAGCGAGAAAAA
GCCGATCGACGCCCCGCCAAAATCATCAAGCGGTACGTATTTCTGCACAT
CACTGTTCCACCCTGCAGCTCGCCACCCACCGTTGCAATGCACCCTAACC
CCCAAGTCCTCTCGAAACGAACAGAGAAACACAGTGAACAATCAAAACGC
TCGTCACGGGTGCTCAAGAAGCGCAAAACGTACGTCATCTCAGATTCAGA
AAGCGAGGCCTCCGCTCACGAAGATGACGACGCATACAACAGCGCAGATG
ATTCGCCGCCGGAGGAAGACGATGATGTGGTTGAAAGTGACTTCGAACTA
TCTCCAAAGCGTGTCACAAAGAAGAGAAAAGCAACCACTGCCGCAAAACG
ATCCACTCCGCCAAAGAAGGGAAAGGCTCAAGTGAAAACAAGAGCACCGC
CTGCAAACACCGCTGCGAGGAACATAAAGCGCTCCCCCGCCGCTGCACAG
AGAAGCGTAGCAAAGCAGAAGAACACACGTGCAACCTTATCTTCTGCATC
TGGCAAGAAACGGCTGGGAGCGCGAATACCAGTCGACTCTTCCGCCTTAT
CTTCCATTGCCAGCTCTGCGCACAAACCAAGACGTCCTTCTCTGAAACCC
TTCCCGTCGCCGCTCATTCGATCTGGGCTGTCCAGAAACGCATCCGTACC
TCCACTCCATGCTTACCTCAAGAAAAACTGA

Coding sequence (CDS) from alignment at NODE_78_length_55752_cov_4.650078:46561..47591-

>Gcaud3664.t1 ID=Gcaud3664.t1|Name=Gcaud3664.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=939bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:46561..47591- (Gracilaria caudata M_176_S67 male)
ATGCGCCGAAACCGATCCTCGAGCTATGCCGAATCCTCCGACGACGACTT
TGCTCTCTCGGACGACGAAAAGTCCTCGTCCCGTTTGAAACGGCCTCGCC
GCACTACCACCAGGCCGCGTCGCCTCGCCGTTCGTTCCCCGCAGTCTAGC
AGTTTTCAACTGGACGAAAACGACGACGATGACGATGTGATTTGTGTCCC
CGATTCATTGGAACAGCACAACGAGCAACAACCGCCGCCGTTCACCAACA
TTCATTCGGATAACGCTCCACACGATCCTAGCGCGGACAACACCATGGAG
AGCGCGCCCAAATCGGATGCGCCGCCCACTGCGGATGAAAGCGAGAAAAA
GCCGATCGACGCCCCGCCAAAATCATCAAGCGAGAAACACAGTGAACAAT
CAAAACGCTCGTCACGGGTGCTCAAGAAGCGCAAAACGTACGTCATCTCA
GATTCAGAAAGCGAGGCCTCCGCTCACGAAGATGACGACGCATACAACAG
CGCAGATGATTCGCCGCCGGAGGAAGACGATGATGTGGTTGAAAGTGACT
TCGAACTATCTCCAAAGCGTGTCACAAAGAAGAGAAAAGCAACCACTGCC
GCAAAACGATCCACTCCGCCAAAGAAGGGAAAGGCTCAAGTGAAAACAAG
AGCACCGCCTGCAAACACCGCTGCGAGGAACATAAAGCGCTCCCCCGCCG
CTGCACAGAGAAGCGTAGCAAAGCAGAAGAACACACGTGCAACCTTATCT
TCTGCATCTGGCAAGAAACGGCTGGGAGCGCGAATACCAGTCGACTCTTC
CGCCTTATCTTCCATTGCCAGCTCTGCGCACAAACCAAGACGTCCTTCTC
TGAAACCCTTCCCGTCGCCGCTCATTCGATCTGGGCTGTCCAGAAACGCA
TCCGTACCTCCACTCCATGCTTACCTCAAGAAAAACTGA