Gcaud3638.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3638.t1
Unique Name	Gcaud3638.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	250

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_120_length_47600_cov_4.363763	contig	NODE_120_length_47600_cov_4.363763:12772..13521 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7719.XP_002120950.2
Preferred name	MGAT4B
PFAMs	Glyco_transf_54
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00738
KEGG Reaction	R05987
KEGG Pathway	ko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG Module	M00075
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008454,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031090,GO:0031974,GO:0031984,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	0.000553
EggNOG OGs	28HC5@1\|root,2QPQJ@2759\|Eukaryota,38B8P@33154\|Opisthokonta,3B9C9@33208\|Metazoa,3CRMG@33213\|Bilateria,488XN@7711\|Chordata
EC	2.4.1.145
Description	mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B
COG category	S
CAZy	GT54
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3638	Gcaud3638	Gracilaria caudata M_176_S67 male	gene	NODE_120_length_47600_cov_4.363763 12772..13521 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3638.t1.stop1	Gcaud3638.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_120_length_47600_cov_4.363763 12772..12774 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3638.t1.CDS1	Gcaud3638.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 12772..13521 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3638.t1.exon1	Gcaud3638.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 12772..13521 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3638.t1.start1	Gcaud3638.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_120_length_47600_cov_4.363763 13519..13521 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3638.t1	Gcaud3638.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_120_length_47600_cov_4.363763 12772..13521 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_120_length_47600_cov_4.363763:12772..13521-
coding sequence from alignment at NODE_120_length_47600_cov_4.363763:12772..13521-

mRNA sequence

>Gcaud3638.t1 ID=Gcaud3638.t1|Name=Gcaud3638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=250bp
MPSVTRELDGVRVEYVSNAVKSWRLATNQSLDLRQLTVYDMDLVPATRPF
WLHNVFQSTVTELPSWLKLAIREDQPVEPRKFTLGDDEHRVKWRSKEALD
YAQVLRRCTEQANVEYIIIIQDDVLFREQMSEVISWCDQHLQDSFTVSQQ
GRPKQIRKCSASLFDLSDEKEDAHELRSSNMVARVWRRDFVGSMVRYIST
NFDEAPVDWLADRRCRNQRRKNVVMEPNPVRHRGQVSSFPANQRESTIT*

spliced messenger RNA

>Gcaud3638.t1 ID=Gcaud3638.t1|Name=Gcaud3638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:12772..13521- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCGTTACGCGCGAACTGGATGGAGTGCGTGTTGAATATGTCAG
TAACGCGGTGAAGTCTTGGCGATTAGCAACAAACCAGAGCCTTGATTTGC
GCCAACTCACAGTCTATGATATGGATCTTGTGCCAGCCACACGTCCATTC
TGGTTGCATAATGTGTTTCAATCGACTGTTACTGAGCTGCCCAGCTGGCT
CAAACTTGCTATAAGAGAGGATCAACCTGTTGAACCAAGAAAATTCACGT
TGGGTGACGATGAACATCGTGTAAAGTGGAGAAGCAAGGAAGCTTTGGAT
TATGCGCAGGTGCTACGCCGTTGCACAGAACAAGCCAATGTTGAATATAT
CATCATCATTCAGGATGATGTTCTGTTTCGTGAGCAAATGAGCGAAGTCA
TCTCCTGGTGTGACCAACATCTGCAAGACTCGTTTACAGTTAGCCAACAA
GGAAGACCAAAACAGATTCGAAAATGCAGCGCTTCGTTGTTCGACCTTTC
GGATGAGAAAGAGGATGCTCATGAGCTTCGTTCTTCCAATATGGTCGCTA
GGGTGTGGAGAAGGGACTTTGTGGGCAGCATGGTGCGATACATATCAACC
AATTTTGATGAAGCTCCGGTGGATTGGCTGGCGGACCGAAGATGTAGGAA
TCAAAGAAGAAAAAACGTTGTGATGGAGCCCAATCCCGTTAGACATCGAG
GACAAGTTTCATCTTTCCCTGCCAATCAGAGAGAGAGTACAATAACATGA

protein sequence of Gcaud3638.t1

>Gcaud3638.t1 ID=Gcaud3638.t1|Name=Gcaud3638.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=250bp
MPSVTRELDGVRVEYVSNAVKSWRLATNQSLDLRQLTVYDMDLVPATRPF
WLHNVFQSTVTELPSWLKLAIREDQPVEPRKFTLGDDEHRVKWRSKEALD
YAQVLRRCTEQANVEYIIIIQDDVLFREQMSEVISWCDQHLQDSFTVSQQ
GRPKQIRKCSASLFDLSDEKEDAHELRSSNMVARVWRRDFVGSMVRYIST
NFDEAPVDWLADRRCRNQRRKNVVMEPNPVRHRGQVSSFPANQRESTIT*

mRNA from alignment at NODE_120_length_47600_cov_4.363763:12772..13521-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3638.t1 ID=Gcaud3638.t1|Name=Gcaud3638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:12772..13521- (Gracilaria caudata M_176_S67 male)
ATGCCCAGCGTTACGCGCGAACTGGATGGAGTGCGTGTTGAATATGTCAG
TAACGCGGTGAAGTCTTGGCGATTAGCAACAAACCAGAGCCTTGATTTGC
GCCAACTCACAGTCTATGATATGGATCTTGTGCCAGCCACACGTCCATTC
TGGTTGCATAATGTGTTTCAATCGACTGTTACTGAGCTGCCCAGCTGGCT
CAAACTTGCTATAAGAGAGGATCAACCTGTTGAACCAAGAAAATTCACGT
TGGGTGACGATGAACATCGTGTAAAGTGGAGAAGCAAGGAAGCTTTGGAT
TATGCGCAGGTGCTACGCCGTTGCACAGAACAAGCCAATGTTGAATATAT
CATCATCATTCAGGATGATGTTCTGTTTCGTGAGCAAATGAGCGAAGTCA
TCTCCTGGTGTGACCAACATCTGCAAGACTCGTTTACAGTTAGCCAACAA
GGAAGACCAAAACAGATTCGAAAATGCAGCGCTTCGTTGTTCGACCTTTC
GGATGAGAAAGAGGATGCTCATGAGCTTCGTTCTTCCAATATGGTCGCTA
GGGTGTGGAGAAGGGACTTTGTGGGCAGCATGGTGCGATACATATCAACC
AATTTTGATGAAGCTCCGGTGGATTGGCTGGCGGACCGAAGATGTAGGAA
TCAAAGAAGAAAAAACGTTGTGATGGAGCCCAATCCCGTTAGACATCGAG
GACAAGTTTCATCTTTCCCTGCCAATCAGAGAGAGAGTACAATAACATGA

Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:12772..13521-

>Gcaud3638.t1 ID=Gcaud3638.t1|Name=Gcaud3638.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=750bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:12772..13521- (Gracilaria caudata M_176_S67 male)
ATGCCCAGCGTTACGCGCGAACTGGATGGAGTGCGTGTTGAATATGTCAG
TAACGCGGTGAAGTCTTGGCGATTAGCAACAAACCAGAGCCTTGATTTGC
GCCAACTCACAGTCTATGATATGGATCTTGTGCCAGCCACACGTCCATTC
TGGTTGCATAATGTGTTTCAATCGACTGTTACTGAGCTGCCCAGCTGGCT
CAAACTTGCTATAAGAGAGGATCAACCTGTTGAACCAAGAAAATTCACGT
TGGGTGACGATGAACATCGTGTAAAGTGGAGAAGCAAGGAAGCTTTGGAT
TATGCGCAGGTGCTACGCCGTTGCACAGAACAAGCCAATGTTGAATATAT
CATCATCATTCAGGATGATGTTCTGTTTCGTGAGCAAATGAGCGAAGTCA
TCTCCTGGTGTGACCAACATCTGCAAGACTCGTTTACAGTTAGCCAACAA
GGAAGACCAAAACAGATTCGAAAATGCAGCGCTTCGTTGTTCGACCTTTC
GGATGAGAAAGAGGATGCTCATGAGCTTCGTTCTTCCAATATGGTCGCTA
GGGTGTGGAGAAGGGACTTTGTGGGCAGCATGGTGCGATACATATCAACC
AATTTTGATGAAGCTCCGGTGGATTGGCTGGCGGACCGAAGATGTAGGAA
TCAAAGAAGAAAAAACGTTGTGATGGAGCCCAATCCCGTTAGACATCGAG
GACAAGTTTCATCTTTCCCTGCCAATCAGAGAGAGAGTACAATAACATGA