Gcaud3630.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3630.t1
Unique Name	Gcaud3630.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	322

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_938_length_15940_cov_4.442425	contig	NODE_938_length_15940_cov_4.442425:7960..8925 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010687819.1
PFAMs	IU_nuc_hydro
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14319
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
Evalue	1.39e-27
EggNOG OGs	COG1957@1\|root,KOG2938@2759\|Eukaryota,37HYC@33090\|Viridiplantae,3G9BH@35493\|Streptophyta
Description	inosine-uridine preferring nucleoside hydrolase
COG category	F
BRITE	ko00000,ko00001,ko00002,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3630	Gcaud3630	Gracilaria caudata M_176_S67 male	gene	NODE_938_length_15940_cov_4.442425 7960..8925 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3630.t1.start1	Gcaud3630.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_938_length_15940_cov_4.442425 7960..7962 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3630.t1.CDS1	Gcaud3630.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_938_length_15940_cov_4.442425 7960..8925 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3630.t1.exon1	Gcaud3630.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_938_length_15940_cov_4.442425 7960..8925 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3630.t1.stop1	Gcaud3630.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_938_length_15940_cov_4.442425 8923..8925 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3630.t1	Gcaud3630.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_938_length_15940_cov_4.442425 7960..8925 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_938_length_15940_cov_4.442425:7960..8925+
coding sequence from alignment at NODE_938_length_15940_cov_4.442425:7960..8925+

mRNA sequence

>Gcaud3630.t1 ID=Gcaud3630.t1|Name=Gcaud3630.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=322bp
MMGSRYASVPIFVGSYYALMDQSNRDLDDSRMKRSYRSYIPFGPGGVLYS
DVMYGMAQFLPQGRRAYDIRKTPDTDEASIHALVKHLDRTKPLEKITFLS
IGTLTPFALMFSKRHIHKVKPLLRRVDGLYVMGGAVDVKGNIFSSTTNNK
AEFNIFADPDGAELAFMDMRRYMDITLCPLDAINDVPLTESMLSELYTKS
KTPEAQLVGHMMKNLRDTWFKPNAFYQTAFLWDPSAAVAMLHPAVIRTRR
KRMIRVVVEEGIDGPDQGWTKPCTSAEILEGTCAEIAVIESLNGKLVRHT
LVETLQQRENSAELPLVCLDK*

spliced messenger RNA

>Gcaud3630.t1 ID=Gcaud3630.t1|Name=Gcaud3630.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=966bp|location=Sequence derived from alignment at NODE_938_length_15940_cov_4.442425:7960..8925+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGATCTCGTTATGCCTCAGTTCCGATCTTTGTAGGTTCGTATTA
TGCACTTATGGACCAGAGTAATAGAGATTTGGATGACAGTCGCATGAAAA
GGAGTTATCGGAGCTACATACCATTCGGTCCCGGGGGAGTTCTGTACTCT
GATGTGATGTACGGCATGGCGCAGTTTCTACCGCAAGGTAGAAGGGCTTA
TGACATTCGCAAAACACCGGATACAGACGAAGCATCGATTCACGCTCTGG
TCAAGCACCTCGATAGAACGAAACCTTTGGAAAAGATAACATTCTTAAGC
ATTGGAACGTTGACGCCCTTTGCGCTAATGTTTTCAAAGAGACACATCCA
CAAAGTCAAACCTCTTTTGCGCCGCGTCGATGGATTGTATGTTATGGGCG
GCGCTGTTGATGTGAAAGGCAACATTTTTAGTTCAACTACGAACAACAAA
GCGGAATTCAATATCTTCGCCGATCCTGATGGGGCCGAGTTAGCGTTTAT
GGACATGCGCAGATACATGGATATTACCCTCTGCCCTCTGGACGCAATTA
ATGACGTCCCTCTCACAGAATCGATGCTCTCAGAGCTATATACGAAATCA
AAAACGCCGGAGGCACAACTTGTGGGACACATGATGAAGAACTTGCGCGA
TACATGGTTCAAGCCCAATGCTTTTTACCAAACAGCTTTTCTATGGGATC
CAAGCGCAGCTGTTGCTATGCTCCATCCAGCTGTAATTAGAACGCGTAGG
AAGCGAATGATTCGAGTTGTTGTTGAGGAAGGCATAGATGGACCGGATCA
GGGATGGACTAAGCCTTGCACATCGGCAGAGATATTAGAAGGGACGTGTG
CTGAGATCGCAGTCATCGAGAGTTTGAATGGCAAACTTGTTCGTCACACC
CTTGTTGAAACGCTTCAACAGAGAGAAAACTCAGCGGAGTTGCCCCTAGT
GTGCCTGGATAAGTAG

protein sequence of Gcaud3630.t1

>Gcaud3630.t1 ID=Gcaud3630.t1|Name=Gcaud3630.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=322bp
MMGSRYASVPIFVGSYYALMDQSNRDLDDSRMKRSYRSYIPFGPGGVLYS
DVMYGMAQFLPQGRRAYDIRKTPDTDEASIHALVKHLDRTKPLEKITFLS
IGTLTPFALMFSKRHIHKVKPLLRRVDGLYVMGGAVDVKGNIFSSTTNNK
AEFNIFADPDGAELAFMDMRRYMDITLCPLDAINDVPLTESMLSELYTKS
KTPEAQLVGHMMKNLRDTWFKPNAFYQTAFLWDPSAAVAMLHPAVIRTRR
KRMIRVVVEEGIDGPDQGWTKPCTSAEILEGTCAEIAVIESLNGKLVRHT
LVETLQQRENSAELPLVCLDK*

mRNA from alignment at NODE_938_length_15940_cov_4.442425:7960..8925+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3630.t1 ID=Gcaud3630.t1|Name=Gcaud3630.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=966bp|location=Sequence derived from alignment at NODE_938_length_15940_cov_4.442425:7960..8925+ (Gracilaria caudata M_176_S67 male)
ATGATGGGATCTCGTTATGCCTCAGTTCCGATCTTTGTAGGTTCGTATTA
TGCACTTATGGACCAGAGTAATAGAGATTTGGATGACAGTCGCATGAAAA
GGAGTTATCGGAGCTACATACCATTCGGTCCCGGGGGAGTTCTGTACTCT
GATGTGATGTACGGCATGGCGCAGTTTCTACCGCAAGGTAGAAGGGCTTA
TGACATTCGCAAAACACCGGATACAGACGAAGCATCGATTCACGCTCTGG
TCAAGCACCTCGATAGAACGAAACCTTTGGAAAAGATAACATTCTTAAGC
ATTGGAACGTTGACGCCCTTTGCGCTAATGTTTTCAAAGAGACACATCCA
CAAAGTCAAACCTCTTTTGCGCCGCGTCGATGGATTGTATGTTATGGGCG
GCGCTGTTGATGTGAAAGGCAACATTTTTAGTTCAACTACGAACAACAAA
GCGGAATTCAATATCTTCGCCGATCCTGATGGGGCCGAGTTAGCGTTTAT
GGACATGCGCAGATACATGGATATTACCCTCTGCCCTCTGGACGCAATTA
ATGACGTCCCTCTCACAGAATCGATGCTCTCAGAGCTATATACGAAATCA
AAAACGCCGGAGGCACAACTTGTGGGACACATGATGAAGAACTTGCGCGA
TACATGGTTCAAGCCCAATGCTTTTTACCAAACAGCTTTTCTATGGGATC
CAAGCGCAGCTGTTGCTATGCTCCATCCAGCTGTAATTAGAACGCGTAGG
AAGCGAATGATTCGAGTTGTTGTTGAGGAAGGCATAGATGGACCGGATCA
GGGATGGACTAAGCCTTGCACATCGGCAGAGATATTAGAAGGGACGTGTG
CTGAGATCGCAGTCATCGAGAGTTTGAATGGCAAACTTGTTCGTCACACC
CTTGTTGAAACGCTTCAACAGAGAGAAAACTCAGCGGAGTTGCCCCTAGT
GTGCCTGGATAAGTAG

Coding sequence (CDS) from alignment at NODE_938_length_15940_cov_4.442425:7960..8925+

>Gcaud3630.t1 ID=Gcaud3630.t1|Name=Gcaud3630.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=966bp|location=Sequence derived from alignment at NODE_938_length_15940_cov_4.442425:7960..8925+ (Gracilaria caudata M_176_S67 male)
ATGATGGGATCTCGTTATGCCTCAGTTCCGATCTTTGTAGGTTCGTATTA
TGCACTTATGGACCAGAGTAATAGAGATTTGGATGACAGTCGCATGAAAA
GGAGTTATCGGAGCTACATACCATTCGGTCCCGGGGGAGTTCTGTACTCT
GATGTGATGTACGGCATGGCGCAGTTTCTACCGCAAGGTAGAAGGGCTTA
TGACATTCGCAAAACACCGGATACAGACGAAGCATCGATTCACGCTCTGG
TCAAGCACCTCGATAGAACGAAACCTTTGGAAAAGATAACATTCTTAAGC
ATTGGAACGTTGACGCCCTTTGCGCTAATGTTTTCAAAGAGACACATCCA
CAAAGTCAAACCTCTTTTGCGCCGCGTCGATGGATTGTATGTTATGGGCG
GCGCTGTTGATGTGAAAGGCAACATTTTTAGTTCAACTACGAACAACAAA
GCGGAATTCAATATCTTCGCCGATCCTGATGGGGCCGAGTTAGCGTTTAT
GGACATGCGCAGATACATGGATATTACCCTCTGCCCTCTGGACGCAATTA
ATGACGTCCCTCTCACAGAATCGATGCTCTCAGAGCTATATACGAAATCA
AAAACGCCGGAGGCACAACTTGTGGGACACATGATGAAGAACTTGCGCGA
TACATGGTTCAAGCCCAATGCTTTTTACCAAACAGCTTTTCTATGGGATC
CAAGCGCAGCTGTTGCTATGCTCCATCCAGCTGTAATTAGAACGCGTAGG
AAGCGAATGATTCGAGTTGTTGTTGAGGAAGGCATAGATGGACCGGATCA
GGGATGGACTAAGCCTTGCACATCGGCAGAGATATTAGAAGGGACGTGTG
CTGAGATCGCAGTCATCGAGAGTTTGAATGGCAAACTTGTTCGTCACACC
CTTGTTGAAACGCTTCAACAGAGAGAAAACTCAGCGGAGTTGCCCCTAGT
GTGCCTGGATAAGTAG