Gcaud3621.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3621.t1
Unique Name	Gcaud3621.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_173_length_41010_cov_4.294826	contig	NODE_173_length_41010_cov_4.294826:12649..13284 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81985.XP_006279380.1
PFAMs	LMWPc
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K01104
Evalue	9.94e-09
EggNOG OGs	COG0394@1\|root,KOG3217@2759\|Eukaryota,37NNM@33090\|Viridiplantae,3GCJD@35493\|Streptophyta
EC	3.1.3.48
Description	low molecular weight
COG category	T
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3621	Gcaud3621	Gracilaria caudata M_176_S67 male	gene	NODE_173_length_41010_cov_4.294826 12649..13284 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3621.t1.stop1	Gcaud3621.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_173_length_41010_cov_4.294826 12649..12651 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3621.t1.CDS1	Gcaud3621.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_173_length_41010_cov_4.294826 12649..13284 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3621.t1.exon1	Gcaud3621.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_173_length_41010_cov_4.294826 12649..13284 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3621.t1.start1	Gcaud3621.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_173_length_41010_cov_4.294826 13282..13284 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3621.t1	Gcaud3621.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_173_length_41010_cov_4.294826 12649..13284 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_173_length_41010_cov_4.294826:12649..13284-
coding sequence from alignment at NODE_173_length_41010_cov_4.294826:12649..13284-

mRNA sequence

>Gcaud3621.t1 ID=Gcaud3621.t1|Name=Gcaud3621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=212bp
MSAFDTNPDFTTGDAFREWILARDRGETAHESSDAHSSCAASRVAVLFVG
RDNSTVSAAAEAIFTDLCSRRALDCFSCHSAGTRVEVEGALPDHGFIEAL
RFKRGLDISRKMACALDKSDLESYNLIVCMDEHVRSELLFMVADEEGRYN
DAMEERIVSLSSYCSSPKLRNMQFRSGKYSPDALNLVLAALVDACNGLLV
SLIESPGVPPS*

spliced messenger RNA

>Gcaud3621.t1 ID=Gcaud3621.t1|Name=Gcaud3621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=636bp|location=Sequence derived from alignment at NODE_173_length_41010_cov_4.294826:12649..13284- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGTTCGACACCAATCCCGATTTTACCACCGGAGACGCATTTCG
CGAGTGGATTCTTGCTCGCGACCGAGGGGAGACCGCGCACGAATCTTCTG
ACGCACATTCTTCATGTGCCGCCTCAAGAGTCGCAGTGCTTTTCGTCGGT
CGTGACAATTCGACAGTTAGCGCAGCGGCGGAGGCCATATTTACGGACCT
GTGTTCGCGGCGCGCTTTGGATTGCTTCTCTTGTCATTCGGCCGGCACAA
GAGTGGAAGTAGAAGGAGCATTGCCAGACCATGGTTTTATAGAGGCTTTA
CGCTTTAAACGGGGTCTGGATATAAGCCGCAAGATGGCTTGCGCTCTGGA
CAAGAGTGATTTAGAAAGCTACAATCTCATTGTGTGTATGGACGAGCATG
TGCGAAGTGAACTACTCTTCATGGTAGCCGACGAAGAAGGTAGGTACAAC
GACGCTATGGAGGAAAGAATCGTGTCACTTTCGTCGTACTGCTCCAGTCC
AAAGCTGAGGAACATGCAATTCCGCTCCGGAAAATACAGCCCAGACGCTC
TGAACTTAGTGCTGGCAGCCCTGGTTGACGCATGTAACGGTTTGTTGGTA
TCTCTGATAGAATCACCTGGTGTACCACCGTCTTAA

protein sequence of Gcaud3621.t1

>Gcaud3621.t1 ID=Gcaud3621.t1|Name=Gcaud3621.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=212bp
MSAFDTNPDFTTGDAFREWILARDRGETAHESSDAHSSCAASRVAVLFVG
RDNSTVSAAAEAIFTDLCSRRALDCFSCHSAGTRVEVEGALPDHGFIEAL
RFKRGLDISRKMACALDKSDLESYNLIVCMDEHVRSELLFMVADEEGRYN
DAMEERIVSLSSYCSSPKLRNMQFRSGKYSPDALNLVLAALVDACNGLLV
SLIESPGVPPS*

mRNA from alignment at NODE_173_length_41010_cov_4.294826:12649..13284-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3621.t1 ID=Gcaud3621.t1|Name=Gcaud3621.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=636bp|location=Sequence derived from alignment at NODE_173_length_41010_cov_4.294826:12649..13284- (Gracilaria caudata M_176_S67 male)
ATGAGCGCGTTCGACACCAATCCCGATTTTACCACCGGAGACGCATTTCG
CGAGTGGATTCTTGCTCGCGACCGAGGGGAGACCGCGCACGAATCTTCTG
ACGCACATTCTTCATGTGCCGCCTCAAGAGTCGCAGTGCTTTTCGTCGGT
CGTGACAATTCGACAGTTAGCGCAGCGGCGGAGGCCATATTTACGGACCT
GTGTTCGCGGCGCGCTTTGGATTGCTTCTCTTGTCATTCGGCCGGCACAA
GAGTGGAAGTAGAAGGAGCATTGCCAGACCATGGTTTTATAGAGGCTTTA
CGCTTTAAACGGGGTCTGGATATAAGCCGCAAGATGGCTTGCGCTCTGGA
CAAGAGTGATTTAGAAAGCTACAATCTCATTGTGTGTATGGACGAGCATG
TGCGAAGTGAACTACTCTTCATGGTAGCCGACGAAGAAGGTAGGTACAAC
GACGCTATGGAGGAAAGAATCGTGTCACTTTCGTCGTACTGCTCCAGTCC
AAAGCTGAGGAACATGCAATTCCGCTCCGGAAAATACAGCCCAGACGCTC
TGAACTTAGTGCTGGCAGCCCTGGTTGACGCATGTAACGGTTTGTTGGTA
TCTCTGATAGAATCACCTGGTGTACCACCGTCTTAA

Coding sequence (CDS) from alignment at NODE_173_length_41010_cov_4.294826:12649..13284-

>Gcaud3621.t1 ID=Gcaud3621.t1|Name=Gcaud3621.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=636bp|location=Sequence derived from alignment at NODE_173_length_41010_cov_4.294826:12649..13284- (Gracilaria caudata M_176_S67 male)
ATGAGCGCGTTCGACACCAATCCCGATTTTACCACCGGAGACGCATTTCG
CGAGTGGATTCTTGCTCGCGACCGAGGGGAGACCGCGCACGAATCTTCTG
ACGCACATTCTTCATGTGCCGCCTCAAGAGTCGCAGTGCTTTTCGTCGGT
CGTGACAATTCGACAGTTAGCGCAGCGGCGGAGGCCATATTTACGGACCT
GTGTTCGCGGCGCGCTTTGGATTGCTTCTCTTGTCATTCGGCCGGCACAA
GAGTGGAAGTAGAAGGAGCATTGCCAGACCATGGTTTTATAGAGGCTTTA
CGCTTTAAACGGGGTCTGGATATAAGCCGCAAGATGGCTTGCGCTCTGGA
CAAGAGTGATTTAGAAAGCTACAATCTCATTGTGTGTATGGACGAGCATG
TGCGAAGTGAACTACTCTTCATGGTAGCCGACGAAGAAGGTAGGTACAAC
GACGCTATGGAGGAAAGAATCGTGTCACTTTCGTCGTACTGCTCCAGTCC
AAAGCTGAGGAACATGCAATTCCGCTCCGGAAAATACAGCCCAGACGCTC
TGAACTTAGTGCTGGCAGCCCTGGTTGACGCATGTAACGGTTTGTTGGTA
TCTCTGATAGAATCACCTGGTGTACCACCGTCTTAA