Gcaud3537.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3537.t1
Unique Name	Gcaud3537.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	445

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_237_length_34827_cov_4.750864	contig	NODE_237_length_34827_cov_4.750864:10155..11489 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5011.R4X8L7
PFAMs	DUF1764
Max annot lvl	4751\|Fungi
Evalue	4.23e-06
EggNOG OGs	2E28N@1\|root,2SCT1@2759\|Eukaryota,3AC0C@33154\|Opisthokonta,3P921@4751\|Fungi,3R002@4890\|Ascomycota,3MD9Z@451866\|Taphrinomycotina
Description	Eukaryotic protein of unknown function (DUF1764)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3537	Gcaud3537	Gracilaria caudata M_176_S67 male	gene	NODE_237_length_34827_cov_4.750864 10155..11489 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3537.t1.start1	Gcaud3537.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_237_length_34827_cov_4.750864 10155..10157 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3537.t1.CDS1	Gcaud3537.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 10155..11489 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3537.t1.exon1	Gcaud3537.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 10155..11489 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3537.t1.stop1	Gcaud3537.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_237_length_34827_cov_4.750864 11487..11489 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3537.t1	Gcaud3537.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_237_length_34827_cov_4.750864 10155..11489 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_237_length_34827_cov_4.750864:10155..11489+
coding sequence from alignment at NODE_237_length_34827_cov_4.750864:10155..11489+

mRNA sequence

>Gcaud3537.t1 ID=Gcaud3537.t1|Name=Gcaud3537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=445bp
MVTVDMSKTRQQISKRKRRIRRSQRRRLQKAHRQQQAQLLAAGAAKKARQ
QAVQNWLEEEKRRDRQRQNGIVSPSTPRVRFADNVSVTEIPTVPTHSLPK
PVSSPTGVRLVREGADQPMAGVALMRGANGLCFSVLYADEDGYDEDDDPD
FVPNALSDEIGIGLSLPTRPRRRIVPQSVPISTPSASAKPANPDTSHSPN
ASPTTSSPPHHKKSAQSTKPPNNASSPKLNGIAKSSKRKRTHSQMLSAQH
SASPDASPNASPNASPKASPSDSPDPAETKTSPAKPSDSPRRRKKKKRKL
IHAGQSPEQNGHHQPKSPASAVRQSHNDTNSNSPQPSFTSVKGEANKQNG
ELVNGDYDDSEIDAMFGEMVQRKAQIRSEQRSRKKADRPNGEKPVSDGHK
GKSKRKSPTRYTEEGFRIMSYDELKADQPAGLNGECPFDCSCCF*

spliced messenger RNA

>Gcaud3537.t1 ID=Gcaud3537.t1|Name=Gcaud3537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:10155..11489+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACCGTCGACATGTCCAAGACTCGTCAACAAATCTCCAAACGGAA
GCGAAGAATCCGCCGGTCACAACGGCGTCGTCTACAAAAGGCGCATCGAC
AGCAACAAGCGCAACTTCTGGCAGCTGGCGCCGCCAAGAAGGCACGCCAA
CAAGCCGTACAAAACTGGCTTGAAGAAGAGAAGCGACGCGATAGACAACG
TCAGAATGGCATCGTTTCTCCGTCTACACCGCGCGTACGATTTGCAGACA
ATGTCTCTGTCACTGAGATTCCAACTGTTCCGACGCATAGCTTGCCCAAA
CCGGTGTCATCGCCCACTGGCGTTCGACTTGTGCGCGAGGGTGCTGATCA
GCCCATGGCAGGAGTCGCACTGATGAGAGGTGCCAATGGACTTTGTTTTT
CTGTGCTTTACGCTGACGAGGATGGTTATGATGAGGACGATGATCCGGAC
TTCGTGCCCAATGCGCTGTCGGATGAAATTGGTATTGGCCTGTCTCTGCC
CACCAGACCGAGACGTCGGATCGTTCCTCAGTCTGTCCCTATCTCAACTC
CTTCAGCTTCTGCCAAACCTGCCAACCCCGACACAAGTCATTCACCCAAT
GCTTCCCCCACGACGTCTTCACCCCCTCATCACAAAAAGTCTGCACAGTC
AACAAAGCCACCTAACAACGCGTCATCACCCAAACTCAATGGTATCGCAA
AGTCTTCGAAGAGAAAAAGGACCCATTCTCAAATGCTCTCCGCTCAACAC
TCAGCCTCTCCAGATGCTTCTCCAAATGCTTCACCAAACGCTTCGCCAAA
AGCTTCGCCAAGCGATTCCCCCGACCCCGCCGAAACCAAGACCTCCCCTG
CAAAGCCTTCAGACTCCCCCAGACGTCGCAAGAAGAAGAAGCGAAAGCTT
ATACATGCCGGTCAAAGCCCCGAACAAAATGGCCATCACCAGCCGAAATC
GCCCGCGTCCGCTGTACGCCAATCTCACAACGATACAAACTCAAACTCAC
CGCAGCCAAGCTTCACCTCCGTCAAAGGTGAAGCCAACAAACAGAACGGC
GAATTGGTGAACGGCGACTACGACGACTCAGAAATTGACGCCATGTTCGG
TGAAATGGTGCAGCGCAAGGCCCAAATCAGGTCTGAGCAACGTAGTCGGA
AAAAAGCGGACAGACCCAATGGTGAGAAGCCTGTCAGTGACGGCCATAAG
GGGAAGTCAAAGAGGAAAAGCCCTACAAGATACACTGAAGAGGGTTTCCG
GATTATGAGCTATGATGAGCTCAAAGCAGATCAGCCCGCCGGCTTAAACG
GCGAGTGCCCCTTCGATTGTTCGTGCTGCTTTTGA

protein sequence of Gcaud3537.t1

>Gcaud3537.t1 ID=Gcaud3537.t1|Name=Gcaud3537.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=445bp
MVTVDMSKTRQQISKRKRRIRRSQRRRLQKAHRQQQAQLLAAGAAKKARQ
QAVQNWLEEEKRRDRQRQNGIVSPSTPRVRFADNVSVTEIPTVPTHSLPK
PVSSPTGVRLVREGADQPMAGVALMRGANGLCFSVLYADEDGYDEDDDPD
FVPNALSDEIGIGLSLPTRPRRRIVPQSVPISTPSASAKPANPDTSHSPN
ASPTTSSPPHHKKSAQSTKPPNNASSPKLNGIAKSSKRKRTHSQMLSAQH
SASPDASPNASPNASPKASPSDSPDPAETKTSPAKPSDSPRRRKKKKRKL
IHAGQSPEQNGHHQPKSPASAVRQSHNDTNSNSPQPSFTSVKGEANKQNG
ELVNGDYDDSEIDAMFGEMVQRKAQIRSEQRSRKKADRPNGEKPVSDGHK
GKSKRKSPTRYTEEGFRIMSYDELKADQPAGLNGECPFDCSCCF*

mRNA from alignment at NODE_237_length_34827_cov_4.750864:10155..11489+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3537.t1 ID=Gcaud3537.t1|Name=Gcaud3537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:10155..11489+ (Gracilaria caudata M_176_S67 male)
ATGGTCACCGTCGACATGTCCAAGACTCGTCAACAAATCTCCAAACGGAA
GCGAAGAATCCGCCGGTCACAACGGCGTCGTCTACAAAAGGCGCATCGAC
AGCAACAAGCGCAACTTCTGGCAGCTGGCGCCGCCAAGAAGGCACGCCAA
CAAGCCGTACAAAACTGGCTTGAAGAAGAGAAGCGACGCGATAGACAACG
TCAGAATGGCATCGTTTCTCCGTCTACACCGCGCGTACGATTTGCAGACA
ATGTCTCTGTCACTGAGATTCCAACTGTTCCGACGCATAGCTTGCCCAAA
CCGGTGTCATCGCCCACTGGCGTTCGACTTGTGCGCGAGGGTGCTGATCA
GCCCATGGCAGGAGTCGCACTGATGAGAGGTGCCAATGGACTTTGTTTTT
CTGTGCTTTACGCTGACGAGGATGGTTATGATGAGGACGATGATCCGGAC
TTCGTGCCCAATGCGCTGTCGGATGAAATTGGTATTGGCCTGTCTCTGCC
CACCAGACCGAGACGTCGGATCGTTCCTCAGTCTGTCCCTATCTCAACTC
CTTCAGCTTCTGCCAAACCTGCCAACCCCGACACAAGTCATTCACCCAAT
GCTTCCCCCACGACGTCTTCACCCCCTCATCACAAAAAGTCTGCACAGTC
AACAAAGCCACCTAACAACGCGTCATCACCCAAACTCAATGGTATCGCAA
AGTCTTCGAAGAGAAAAAGGACCCATTCTCAAATGCTCTCCGCTCAACAC
TCAGCCTCTCCAGATGCTTCTCCAAATGCTTCACCAAACGCTTCGCCAAA
AGCTTCGCCAAGCGATTCCCCCGACCCCGCCGAAACCAAGACCTCCCCTG
CAAAGCCTTCAGACTCCCCCAGACGTCGCAAGAAGAAGAAGCGAAAGCTT
ATACATGCCGGTCAAAGCCCCGAACAAAATGGCCATCACCAGCCGAAATC
GCCCGCGTCCGCTGTACGCCAATCTCACAACGATACAAACTCAAACTCAC
CGCAGCCAAGCTTCACCTCCGTCAAAGGTGAAGCCAACAAACAGAACGGC
GAATTGGTGAACGGCGACTACGACGACTCAGAAATTGACGCCATGTTCGG
TGAAATGGTGCAGCGCAAGGCCCAAATCAGGTCTGAGCAACGTAGTCGGA
AAAAAGCGGACAGACCCAATGGTGAGAAGCCTGTCAGTGACGGCCATAAG
GGGAAGTCAAAGAGGAAAAGCCCTACAAGATACACTGAAGAGGGTTTCCG
GATTATGAGCTATGATGAGCTCAAAGCAGATCAGCCCGCCGGCTTAAACG
GCGAGTGCCCCTTCGATTGTTCGTGCTGCTTTTGA

Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:10155..11489+

>Gcaud3537.t1 ID=Gcaud3537.t1|Name=Gcaud3537.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1335bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:10155..11489+ (Gracilaria caudata M_176_S67 male)
ATGGTCACCGTCGACATGTCCAAGACTCGTCAACAAATCTCCAAACGGAA
GCGAAGAATCCGCCGGTCACAACGGCGTCGTCTACAAAAGGCGCATCGAC
AGCAACAAGCGCAACTTCTGGCAGCTGGCGCCGCCAAGAAGGCACGCCAA
CAAGCCGTACAAAACTGGCTTGAAGAAGAGAAGCGACGCGATAGACAACG
TCAGAATGGCATCGTTTCTCCGTCTACACCGCGCGTACGATTTGCAGACA
ATGTCTCTGTCACTGAGATTCCAACTGTTCCGACGCATAGCTTGCCCAAA
CCGGTGTCATCGCCCACTGGCGTTCGACTTGTGCGCGAGGGTGCTGATCA
GCCCATGGCAGGAGTCGCACTGATGAGAGGTGCCAATGGACTTTGTTTTT
CTGTGCTTTACGCTGACGAGGATGGTTATGATGAGGACGATGATCCGGAC
TTCGTGCCCAATGCGCTGTCGGATGAAATTGGTATTGGCCTGTCTCTGCC
CACCAGACCGAGACGTCGGATCGTTCCTCAGTCTGTCCCTATCTCAACTC
CTTCAGCTTCTGCCAAACCTGCCAACCCCGACACAAGTCATTCACCCAAT
GCTTCCCCCACGACGTCTTCACCCCCTCATCACAAAAAGTCTGCACAGTC
AACAAAGCCACCTAACAACGCGTCATCACCCAAACTCAATGGTATCGCAA
AGTCTTCGAAGAGAAAAAGGACCCATTCTCAAATGCTCTCCGCTCAACAC
TCAGCCTCTCCAGATGCTTCTCCAAATGCTTCACCAAACGCTTCGCCAAA
AGCTTCGCCAAGCGATTCCCCCGACCCCGCCGAAACCAAGACCTCCCCTG
CAAAGCCTTCAGACTCCCCCAGACGTCGCAAGAAGAAGAAGCGAAAGCTT
ATACATGCCGGTCAAAGCCCCGAACAAAATGGCCATCACCAGCCGAAATC
GCCCGCGTCCGCTGTACGCCAATCTCACAACGATACAAACTCAAACTCAC
CGCAGCCAAGCTTCACCTCCGTCAAAGGTGAAGCCAACAAACAGAACGGC
GAATTGGTGAACGGCGACTACGACGACTCAGAAATTGACGCCATGTTCGG
TGAAATGGTGCAGCGCAAGGCCCAAATCAGGTCTGAGCAACGTAGTCGGA
AAAAAGCGGACAGACCCAATGGTGAGAAGCCTGTCAGTGACGGCCATAAG
GGGAAGTCAAAGAGGAAAAGCCCTACAAGATACACTGAAGAGGGTTTCCG
GATTATGAGCTATGATGAGCTCAAAGCAGATCAGCCCGCCGGCTTAAACG
GCGAGTGCCCCTTCGATTGTTCGTGCTGCTTTTGA