Gcaud3530.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3530.t1
Unique Name	Gcaud3530.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:69958..71853 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_009737-tr
Preferred name	KIAA0020
PFAMs	CPL
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14844
GOs	GO:0000003,GO:0002009,GO:0002165,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006417,GO:0006928,GO:0007275,GO:0007276,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008354,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010835,GO:0012505,GO:0016477,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0031323,GO:0031326,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0034248,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040011,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048513,GO:0048563,GO:0048569,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051246,GO:0051674,GO:0051704,GO:0060255,GO:0060429,GO:0060562,GO:0065007,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:2000112
Evalue	1.25e-33
EggNOG OGs	KOG2050@1\|root,KOG2050@2759\|Eukaryota,38B4G@33154\|Opisthokonta,3BBS3@33208\|Metazoa,3CWVA@33213\|Bilateria
Description	Pumilio RNA binding family member 3
COG category	J
BRITE	ko00000,ko03009,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3530	Gcaud3530	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 69958..71853 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3530.t1.stop1	Gcaud3530.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 69958..69960 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3530.t1.CDS1	Gcaud3530.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 69958..71853 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3530.t1.exon1	Gcaud3530.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 69958..71853 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3530.t1.start1	Gcaud3530.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 71851..71853 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3530.t1	Gcaud3530.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 69958..71853 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:69958..71853-
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:69958..71853-

mRNA sequence

>Gcaud3530.t1 ID=Gcaud3530.t1|Name=Gcaud3530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=632bp
MDTENRTTDIGEEPEKNVDDNNVKPTRKKRSPSEIKESANKKPRKSPNSS
KQAEKPQRATRREERRELMNQAKAKWEQLRPRSTSKEKSVRLIQELLEML
QSRIVEFVFRHDGSRIVQWMLGEGNEKQRESVMKELMASADQQVTFGSGP
FFTKLACDRFGSHLAFKMLRTASKKQRQVIFDKYLRGSTPELMRSRHGAD
VLDFAYQTTLSTRAKAELSVEMLYGKERKLFDSVRSKLFDKVNESDKKRS
RNVFARSLELLEESFRDVVVDSAGSVVNQLIDRENILRFEIVHAAIKDYF
DVLVTSYPKGRAQELASLLGPAVVHIAHTKPGVQVAVQCVKLLDAKHRKK
LIRGLKTHIRKLVEDEFGHRLIISLFEWVDDTRLVGNMIRTELFSASHLD
AELNDGGDSQKSKSRGGRSRAEKKGKEKQEKARVDSEIEPGANIDLVYLR
TVCTHRYAHMALLNLLVGRESRYFNPDMYGFVWEGVNVEKFGLMSKKEAE
IRRRELLAAFDDGIREVMKREMRTLLMNHWSAAVVLGALLSETTSESVVS
GIVSCLESEEGVSELAGNVCARKTLATIFKIGGSKTSCTVLDNCETEALR
ALLNSKGCETIGEHLARSSGRMEVRMLLESQ*

spliced messenger RNA

>Gcaud3530.t1 ID=Gcaud3530.t1|Name=Gcaud3530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:69958..71853- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACGGAAAACCGTACAACTGATATTGGCGAAGAACCGGAAAAGAA
TGTCGATGACAACAATGTTAAACCTACAAGAAAGAAACGTTCGCCATCTG
AGATAAAGGAATCCGCTAATAAAAAGCCTCGCAAGAGTCCTAACTCCTCA
AAGCAGGCTGAGAAGCCACAGAGGGCCACCCGACGTGAGGAACGTCGTGA
ATTGATGAACCAGGCGAAAGCAAAATGGGAGCAGCTGCGTCCTCGGTCAA
CAAGCAAGGAAAAGTCAGTTCGTTTGATACAAGAACTACTTGAAATGCTG
CAGAGCAGAATCGTTGAGTTCGTTTTTAGGCACGATGGTTCTCGAATCGT
TCAATGGATGTTGGGGGAGGGAAATGAGAAACAGAGAGAATCTGTAATGA
AGGAACTCATGGCAAGTGCTGATCAACAGGTTACCTTTGGAAGTGGCCCA
TTCTTCACTAAATTAGCTTGTGATCGCTTTGGAAGTCATCTAGCTTTCAA
GATGTTGCGAACGGCAAGCAAGAAGCAAAGGCAGGTAATTTTTGATAAGT
ACTTGCGTGGAAGTACTCCAGAGTTGATGCGTAGCAGACACGGTGCGGAT
GTGCTGGATTTTGCGTACCAGACTACACTTAGCACGAGAGCAAAAGCTGA
ACTGAGCGTCGAAATGCTGTATGGGAAGGAGCGAAAACTGTTCGACTCGG
TACGGAGCAAATTGTTTGACAAGGTCAATGAGAGCGACAAAAAAAGATCC
AGGAATGTTTTCGCTCGCTCCCTGGAATTGCTCGAGGAATCCTTCAGAGA
TGTTGTCGTCGATTCAGCTGGTTCCGTGGTAAATCAACTTATAGATAGGG
AGAACATACTTCGTTTTGAAATCGTACACGCTGCAATCAAGGACTACTTT
GACGTGTTAGTGACAAGTTACCCGAAAGGGCGTGCTCAGGAACTTGCTTC
ACTTCTGGGACCGGCAGTTGTTCACATCGCGCATACCAAGCCTGGTGTTC
AAGTTGCTGTGCAATGTGTAAAGCTTCTCGACGCTAAGCACAGGAAGAAA
CTGATACGTGGGCTAAAGACGCATATTCGAAAGCTGGTTGAAGATGAGTT
TGGACATCGGCTCATAATTTCGCTTTTCGAGTGGGTGGATGACACTCGTT
TGGTGGGTAATATGATAAGGACAGAACTGTTTTCCGCGTCTCATCTAGAT
GCAGAACTGAATGACGGTGGAGATAGTCAAAAAAGCAAGTCCCGAGGAGG
AAGGAGTAGGGCTGAGAAAAAGGGCAAGGAAAAGCAAGAGAAAGCACGAG
TGGACAGCGAGATAGAACCTGGAGCTAATATCGATTTGGTGTACCTCAGG
ACCGTTTGTACACATCGCTACGCTCACATGGCTCTATTAAACTTGCTAGT
GGGTAGAGAAAGTCGCTACTTCAACCCTGATATGTATGGCTTCGTGTGGG
AGGGTGTAAATGTGGAGAAGTTTGGGTTGATGTCGAAAAAGGAAGCGGAA
ATTCGACGGAGAGAGCTTCTAGCAGCTTTCGACGATGGGATTCGAGAAGT
GATGAAGCGCGAAATGAGGACGTTATTAATGAACCATTGGTCAGCAGCTG
TAGTGCTTGGGGCGTTATTGTCAGAAACGACCTCAGAAAGCGTGGTGAGC
GGCATTGTAAGTTGTCTTGAGAGCGAAGAGGGAGTCAGTGAGCTTGCGGG
GAACGTTTGCGCTCGAAAGACATTAGCTACAATCTTCAAAATCGGTGGTA
GCAAAACTTCGTGCACAGTGCTTGATAACTGCGAAACGGAGGCACTGCGA
GCTCTGCTGAACTCGAAAGGGTGCGAAACAATTGGTGAGCACCTGGCAAG
GAGCAGCGGTAGAATGGAAGTACGGATGTTGTTAGAGTCACAATGA

protein sequence of Gcaud3530.t1

>Gcaud3530.t1 ID=Gcaud3530.t1|Name=Gcaud3530.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=632bp
MDTENRTTDIGEEPEKNVDDNNVKPTRKKRSPSEIKESANKKPRKSPNSS
KQAEKPQRATRREERRELMNQAKAKWEQLRPRSTSKEKSVRLIQELLEML
QSRIVEFVFRHDGSRIVQWMLGEGNEKQRESVMKELMASADQQVTFGSGP
FFTKLACDRFGSHLAFKMLRTASKKQRQVIFDKYLRGSTPELMRSRHGAD
VLDFAYQTTLSTRAKAELSVEMLYGKERKLFDSVRSKLFDKVNESDKKRS
RNVFARSLELLEESFRDVVVDSAGSVVNQLIDRENILRFEIVHAAIKDYF
DVLVTSYPKGRAQELASLLGPAVVHIAHTKPGVQVAVQCVKLLDAKHRKK
LIRGLKTHIRKLVEDEFGHRLIISLFEWVDDTRLVGNMIRTELFSASHLD
AELNDGGDSQKSKSRGGRSRAEKKGKEKQEKARVDSEIEPGANIDLVYLR
TVCTHRYAHMALLNLLVGRESRYFNPDMYGFVWEGVNVEKFGLMSKKEAE
IRRRELLAAFDDGIREVMKREMRTLLMNHWSAAVVLGALLSETTSESVVS
GIVSCLESEEGVSELAGNVCARKTLATIFKIGGSKTSCTVLDNCETEALR
ALLNSKGCETIGEHLARSSGRMEVRMLLESQ*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:69958..71853-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3530.t1 ID=Gcaud3530.t1|Name=Gcaud3530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:69958..71853- (Gracilaria caudata M_176_S67 male)
ATGGATACGGAAAACCGTACAACTGATATTGGCGAAGAACCGGAAAAGAA
TGTCGATGACAACAATGTTAAACCTACAAGAAAGAAACGTTCGCCATCTG
AGATAAAGGAATCCGCTAATAAAAAGCCTCGCAAGAGTCCTAACTCCTCA
AAGCAGGCTGAGAAGCCACAGAGGGCCACCCGACGTGAGGAACGTCGTGA
ATTGATGAACCAGGCGAAAGCAAAATGGGAGCAGCTGCGTCCTCGGTCAA
CAAGCAAGGAAAAGTCAGTTCGTTTGATACAAGAACTACTTGAAATGCTG
CAGAGCAGAATCGTTGAGTTCGTTTTTAGGCACGATGGTTCTCGAATCGT
TCAATGGATGTTGGGGGAGGGAAATGAGAAACAGAGAGAATCTGTAATGA
AGGAACTCATGGCAAGTGCTGATCAACAGGTTACCTTTGGAAGTGGCCCA
TTCTTCACTAAATTAGCTTGTGATCGCTTTGGAAGTCATCTAGCTTTCAA
GATGTTGCGAACGGCAAGCAAGAAGCAAAGGCAGGTAATTTTTGATAAGT
ACTTGCGTGGAAGTACTCCAGAGTTGATGCGTAGCAGACACGGTGCGGAT
GTGCTGGATTTTGCGTACCAGACTACACTTAGCACGAGAGCAAAAGCTGA
ACTGAGCGTCGAAATGCTGTATGGGAAGGAGCGAAAACTGTTCGACTCGG
TACGGAGCAAATTGTTTGACAAGGTCAATGAGAGCGACAAAAAAAGATCC
AGGAATGTTTTCGCTCGCTCCCTGGAATTGCTCGAGGAATCCTTCAGAGA
TGTTGTCGTCGATTCAGCTGGTTCCGTGGTAAATCAACTTATAGATAGGG
AGAACATACTTCGTTTTGAAATCGTACACGCTGCAATCAAGGACTACTTT
GACGTGTTAGTGACAAGTTACCCGAAAGGGCGTGCTCAGGAACTTGCTTC
ACTTCTGGGACCGGCAGTTGTTCACATCGCGCATACCAAGCCTGGTGTTC
AAGTTGCTGTGCAATGTGTAAAGCTTCTCGACGCTAAGCACAGGAAGAAA
CTGATACGTGGGCTAAAGACGCATATTCGAAAGCTGGTTGAAGATGAGTT
TGGACATCGGCTCATAATTTCGCTTTTCGAGTGGGTGGATGACACTCGTT
TGGTGGGTAATATGATAAGGACAGAACTGTTTTCCGCGTCTCATCTAGAT
GCAGAACTGAATGACGGTGGAGATAGTCAAAAAAGCAAGTCCCGAGGAGG
AAGGAGTAGGGCTGAGAAAAAGGGCAAGGAAAAGCAAGAGAAAGCACGAG
TGGACAGCGAGATAGAACCTGGAGCTAATATCGATTTGGTGTACCTCAGG
ACCGTTTGTACACATCGCTACGCTCACATGGCTCTATTAAACTTGCTAGT
GGGTAGAGAAAGTCGCTACTTCAACCCTGATATGTATGGCTTCGTGTGGG
AGGGTGTAAATGTGGAGAAGTTTGGGTTGATGTCGAAAAAGGAAGCGGAA
ATTCGACGGAGAGAGCTTCTAGCAGCTTTCGACGATGGGATTCGAGAAGT
GATGAAGCGCGAAATGAGGACGTTATTAATGAACCATTGGTCAGCAGCTG
TAGTGCTTGGGGCGTTATTGTCAGAAACGACCTCAGAAAGCGTGGTGAGC
GGCATTGTAAGTTGTCTTGAGAGCGAAGAGGGAGTCAGTGAGCTTGCGGG
GAACGTTTGCGCTCGAAAGACATTAGCTACAATCTTCAAAATCGGTGGTA
GCAAAACTTCGTGCACAGTGCTTGATAACTGCGAAACGGAGGCACTGCGA
GCTCTGCTGAACTCGAAAGGGTGCGAAACAATTGGTGAGCACCTGGCAAG
GAGCAGCGGTAGAATGGAAGTACGGATGTTGTTAGAGTCACAATGA

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:69958..71853-

>Gcaud3530.t1 ID=Gcaud3530.t1|Name=Gcaud3530.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1896bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:69958..71853- (Gracilaria caudata M_176_S67 male)
ATGGATACGGAAAACCGTACAACTGATATTGGCGAAGAACCGGAAAAGAA
TGTCGATGACAACAATGTTAAACCTACAAGAAAGAAACGTTCGCCATCTG
AGATAAAGGAATCCGCTAATAAAAAGCCTCGCAAGAGTCCTAACTCCTCA
AAGCAGGCTGAGAAGCCACAGAGGGCCACCCGACGTGAGGAACGTCGTGA
ATTGATGAACCAGGCGAAAGCAAAATGGGAGCAGCTGCGTCCTCGGTCAA
CAAGCAAGGAAAAGTCAGTTCGTTTGATACAAGAACTACTTGAAATGCTG
CAGAGCAGAATCGTTGAGTTCGTTTTTAGGCACGATGGTTCTCGAATCGT
TCAATGGATGTTGGGGGAGGGAAATGAGAAACAGAGAGAATCTGTAATGA
AGGAACTCATGGCAAGTGCTGATCAACAGGTTACCTTTGGAAGTGGCCCA
TTCTTCACTAAATTAGCTTGTGATCGCTTTGGAAGTCATCTAGCTTTCAA
GATGTTGCGAACGGCAAGCAAGAAGCAAAGGCAGGTAATTTTTGATAAGT
ACTTGCGTGGAAGTACTCCAGAGTTGATGCGTAGCAGACACGGTGCGGAT
GTGCTGGATTTTGCGTACCAGACTACACTTAGCACGAGAGCAAAAGCTGA
ACTGAGCGTCGAAATGCTGTATGGGAAGGAGCGAAAACTGTTCGACTCGG
TACGGAGCAAATTGTTTGACAAGGTCAATGAGAGCGACAAAAAAAGATCC
AGGAATGTTTTCGCTCGCTCCCTGGAATTGCTCGAGGAATCCTTCAGAGA
TGTTGTCGTCGATTCAGCTGGTTCCGTGGTAAATCAACTTATAGATAGGG
AGAACATACTTCGTTTTGAAATCGTACACGCTGCAATCAAGGACTACTTT
GACGTGTTAGTGACAAGTTACCCGAAAGGGCGTGCTCAGGAACTTGCTTC
ACTTCTGGGACCGGCAGTTGTTCACATCGCGCATACCAAGCCTGGTGTTC
AAGTTGCTGTGCAATGTGTAAAGCTTCTCGACGCTAAGCACAGGAAGAAA
CTGATACGTGGGCTAAAGACGCATATTCGAAAGCTGGTTGAAGATGAGTT
TGGACATCGGCTCATAATTTCGCTTTTCGAGTGGGTGGATGACACTCGTT
TGGTGGGTAATATGATAAGGACAGAACTGTTTTCCGCGTCTCATCTAGAT
GCAGAACTGAATGACGGTGGAGATAGTCAAAAAAGCAAGTCCCGAGGAGG
AAGGAGTAGGGCTGAGAAAAAGGGCAAGGAAAAGCAAGAGAAAGCACGAG
TGGACAGCGAGATAGAACCTGGAGCTAATATCGATTTGGTGTACCTCAGG
ACCGTTTGTACACATCGCTACGCTCACATGGCTCTATTAAACTTGCTAGT
GGGTAGAGAAAGTCGCTACTTCAACCCTGATATGTATGGCTTCGTGTGGG
AGGGTGTAAATGTGGAGAAGTTTGGGTTGATGTCGAAAAAGGAAGCGGAA
ATTCGACGGAGAGAGCTTCTAGCAGCTTTCGACGATGGGATTCGAGAAGT
GATGAAGCGCGAAATGAGGACGTTATTAATGAACCATTGGTCAGCAGCTG
TAGTGCTTGGGGCGTTATTGTCAGAAACGACCTCAGAAAGCGTGGTGAGC
GGCATTGTAAGTTGTCTTGAGAGCGAAGAGGGAGTCAGTGAGCTTGCGGG
GAACGTTTGCGCTCGAAAGACATTAGCTACAATCTTCAAAATCGGTGGTA
GCAAAACTTCGTGCACAGTGCTTGATAACTGCGAAACGGAGGCACTGCGA
GCTCTGCTGAACTCGAAAGGGTGCGAAACAATTGGTGAGCACCTGGCAAG
GAGCAGCGGTAGAATGGAAGTACGGATGTTGTTAGAGTCACAATGA