Gcaud3527.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3527.t1
Unique Name	Gcaud3527.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:61276..63030 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3527	Gcaud3527	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 61276..63030 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3527.t1.stop1	Gcaud3527.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 61276..61278 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3527.t1.CDS1	Gcaud3527.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 61276..63030 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3527.t1.exon1	Gcaud3527.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 61276..63030 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3527.t1.start1	Gcaud3527.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 63028..63030 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3527.t1	Gcaud3527.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 61276..63030 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:61276..63030-
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:61276..63030-

mRNA sequence

>Gcaud3527.t1 ID=Gcaud3527.t1|Name=Gcaud3527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp
LAASKPAPLVNKRDTPAIFNGPEAVLAVLLAAAALLADFVRNVARLSAAG
AKQTLDLNAAESTVAELREALRISREVLDETQNRLTAVSDQRADAQLAVA
EADQMRQKMDSANQYAQSAQQQLQKLQRALSRVQQKRSDTAQEQERVDAE
RQRVETQIAEKRLLLDQLCEQIETARDTEMKLKQRLEHQQALLTKQMQQT
GNMPDTIAAGTEAEDATLRGGDASRSEMSLQEIKRNLNAERLALSADVRE
AQVASEAMTQEKVDELQLLKREMKAKRDGIRARLKKAQTTVDREENEIQR
REEAIDQILGSIETPDDEKVIMDGVKETEKKSTVKKRSRKPKQEVIDNDV
SAVDESEARSVKRKSGKKSPADDSTVEETLRTATEVGVDAGEDKTEALEE
ASTSEEKDVKASSTRVAGKGQRRKVGRSRKGAASASTAPKTRTRKSTRKK
RNEMDEDQPLTFQEASEVRQAMMDMLDTGIDPQVLQQEGYTFTEMELQQM
RSQLPGGAEIEGGEEMKDDRAADGDSASTMSSMRAKEEGAAGAASAENTE
SAANVEISHAGEKGELPRPKRKRSSRQSQSGPSS*

spliced messenger RNA

>Gcaud3527.t1 ID=Gcaud3527.t1|Name=Gcaud3527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:61276..63030- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCTGCCTCCAAACCGGCGCCGCTTGTGAACAAGCGCGACACACCCGC
CATTTTCAACGGCCCGGAGGCCGTGTTGGCCGTTTTGCTGGCTGCCGCCG
CCTTGCTGGCTGATTTTGTCCGCAATGTGGCGCGATTGTCTGCCGCAGGC
GCCAAACAAACGCTTGATTTGAACGCTGCGGAGAGCACCGTCGCAGAGTT
GAGGGAGGCCTTGCGCATCAGTAGGGAGGTTTTGGACGAAACTCAAAATC
GTCTAACTGCCGTGTCTGACCAGCGAGCGGATGCGCAGCTTGCGGTGGCC
GAAGCTGATCAAATGCGACAAAAAATGGATAGTGCTAACCAATATGCTCA
GAGCGCGCAGCAACAACTGCAAAAGTTGCAGCGCGCGCTCAGTAGAGTGC
AACAGAAACGCTCTGATACTGCGCAGGAGCAGGAGCGTGTTGATGCAGAG
CGACAACGAGTGGAAACCCAGATTGCTGAGAAGCGTTTGTTGCTGGATCA
ACTCTGCGAGCAGATCGAGACAGCTAGAGACACTGAAATGAAGCTGAAGC
AACGTTTAGAACACCAGCAAGCTTTGTTGACAAAACAGATGCAACAAACC
GGGAACATGCCAGACACCATTGCAGCTGGCACAGAAGCAGAAGATGCTAC
ACTGAGAGGAGGCGATGCATCACGTTCGGAGATGAGTTTACAAGAGATTA
AACGCAATTTGAACGCCGAGCGACTCGCGTTGTCTGCCGACGTTCGTGAA
GCTCAAGTTGCTAGCGAAGCTATGACGCAAGAGAAGGTTGACGAGCTGCA
GTTATTAAAGCGCGAGATGAAGGCGAAGCGGGATGGTATACGCGCTAGAC
TGAAGAAAGCTCAGACTACCGTGGACAGGGAAGAAAATGAAATTCAACGG
CGTGAAGAGGCTATTGATCAGATTCTGGGTTCTATCGAAACGCCAGACGA
TGAGAAAGTGATAATGGATGGCGTTAAGGAAACAGAAAAAAAGAGCACTG
TAAAAAAGCGGAGTCGAAAACCTAAACAGGAAGTGATCGACAATGATGTT
TCGGCGGTCGATGAGAGTGAGGCGAGATCAGTGAAACGAAAGAGCGGGAA
AAAGAGCCCTGCGGACGATAGCACCGTAGAAGAGACACTGAGGACAGCGA
CGGAAGTCGGCGTAGACGCGGGTGAGGATAAGACAGAAGCATTGGAGGAA
GCGTCGACCAGCGAAGAGAAGGATGTCAAAGCGTCAAGTACGCGCGTTGC
AGGAAAAGGGCAAAGAAGGAAGGTGGGAAGATCGAGAAAGGGAGCTGCAT
CCGCAAGCACGGCTCCTAAGACAAGGACTAGAAAATCGACGAGGAAGAAA
CGCAATGAGATGGATGAAGACCAGCCGCTGACATTCCAAGAAGCGTCAGA
GGTGCGTCAAGCGATGATGGATATGCTAGACACGGGGATTGATCCGCAAG
TTCTACAGCAGGAGGGCTACACTTTTACTGAGATGGAGCTACAGCAAATG
CGTTCGCAGTTACCGGGCGGCGCCGAGATTGAGGGAGGCGAAGAGATGAA
GGACGACAGGGCTGCGGATGGTGACAGCGCGAGCACAATGAGCAGCATGA
GAGCTAAAGAGGAGGGCGCGGCGGGCGCGGCGAGTGCGGAGAACACGGAG
AGTGCAGCGAACGTGGAAATCTCGCATGCTGGGGAGAAGGGCGAACTGCC
GCGCCCAAAGCGGAAACGGAGCTCGCGCCAAAGCCAGTCGGGCCCATCGT
CGTGA

protein sequence of Gcaud3527.t1

>Gcaud3527.t1 ID=Gcaud3527.t1|Name=Gcaud3527.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=585bp
LAASKPAPLVNKRDTPAIFNGPEAVLAVLLAAAALLADFVRNVARLSAAG
AKQTLDLNAAESTVAELREALRISREVLDETQNRLTAVSDQRADAQLAVA
EADQMRQKMDSANQYAQSAQQQLQKLQRALSRVQQKRSDTAQEQERVDAE
RQRVETQIAEKRLLLDQLCEQIETARDTEMKLKQRLEHQQALLTKQMQQT
GNMPDTIAAGTEAEDATLRGGDASRSEMSLQEIKRNLNAERLALSADVRE
AQVASEAMTQEKVDELQLLKREMKAKRDGIRARLKKAQTTVDREENEIQR
REEAIDQILGSIETPDDEKVIMDGVKETEKKSTVKKRSRKPKQEVIDNDV
SAVDESEARSVKRKSGKKSPADDSTVEETLRTATEVGVDAGEDKTEALEE
ASTSEEKDVKASSTRVAGKGQRRKVGRSRKGAASASTAPKTRTRKSTRKK
RNEMDEDQPLTFQEASEVRQAMMDMLDTGIDPQVLQQEGYTFTEMELQQM
RSQLPGGAEIEGGEEMKDDRAADGDSASTMSSMRAKEEGAAGAASAENTE
SAANVEISHAGEKGELPRPKRKRSSRQSQSGPSS*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:61276..63030-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3527.t1 ID=Gcaud3527.t1|Name=Gcaud3527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:61276..63030- (Gracilaria caudata M_176_S67 male)
TTGGCTGCCTCCAAACCGGCGCCGCTTGTGAACAAGCGCGACACACCCGC
CATTTTCAACGGCCCGGAGGCCGTGTTGGCCGTTTTGCTGGCTGCCGCCG
CCTTGCTGGCTGATTTTGTCCGCAATGTGGCGCGATTGTCTGCCGCAGGC
GCCAAACAAACGCTTGATTTGAACGCTGCGGAGAGCACCGTCGCAGAGTT
GAGGGAGGCCTTGCGCATCAGTAGGGAGGTTTTGGACGAAACTCAAAATC
GTCTAACTGCCGTGTCTGACCAGCGAGCGGATGCGCAGCTTGCGGTGGCC
GAAGCTGATCAAATGCGACAAAAAATGGATAGTGCTAACCAATATGCTCA
GAGCGCGCAGCAACAACTGCAAAAGTTGCAGCGCGCGCTCAGTAGAGTGC
AACAGAAACGCTCTGATACTGCGCAGGAGCAGGAGCGTGTTGATGCAGAG
CGACAACGAGTGGAAACCCAGATTGCTGAGAAGCGTTTGTTGCTGGATCA
ACTCTGCGAGCAGATCGAGACAGCTAGAGACACTGAAATGAAGCTGAAGC
AACGTTTAGAACACCAGCAAGCTTTGTTGACAAAACAGATGCAACAAACC
GGGAACATGCCAGACACCATTGCAGCTGGCACAGAAGCAGAAGATGCTAC
ACTGAGAGGAGGCGATGCATCACGTTCGGAGATGAGTTTACAAGAGATTA
AACGCAATTTGAACGCCGAGCGACTCGCGTTGTCTGCCGACGTTCGTGAA
GCTCAAGTTGCTAGCGAAGCTATGACGCAAGAGAAGGTTGACGAGCTGCA
GTTATTAAAGCGCGAGATGAAGGCGAAGCGGGATGGTATACGCGCTAGAC
TGAAGAAAGCTCAGACTACCGTGGACAGGGAAGAAAATGAAATTCAACGG
CGTGAAGAGGCTATTGATCAGATTCTGGGTTCTATCGAAACGCCAGACGA
TGAGAAAGTGATAATGGATGGCGTTAAGGAAACAGAAAAAAAGAGCACTG
TAAAAAAGCGGAGTCGAAAACCTAAACAGGAAGTGATCGACAATGATGTT
TCGGCGGTCGATGAGAGTGAGGCGAGATCAGTGAAACGAAAGAGCGGGAA
AAAGAGCCCTGCGGACGATAGCACCGTAGAAGAGACACTGAGGACAGCGA
CGGAAGTCGGCGTAGACGCGGGTGAGGATAAGACAGAAGCATTGGAGGAA
GCGTCGACCAGCGAAGAGAAGGATGTCAAAGCGTCAAGTACGCGCGTTGC
AGGAAAAGGGCAAAGAAGGAAGGTGGGAAGATCGAGAAAGGGAGCTGCAT
CCGCAAGCACGGCTCCTAAGACAAGGACTAGAAAATCGACGAGGAAGAAA
CGCAATGAGATGGATGAAGACCAGCCGCTGACATTCCAAGAAGCGTCAGA
GGTGCGTCAAGCGATGATGGATATGCTAGACACGGGGATTGATCCGCAAG
TTCTACAGCAGGAGGGCTACACTTTTACTGAGATGGAGCTACAGCAAATG
CGTTCGCAGTTACCGGGCGGCGCCGAGATTGAGGGAGGCGAAGAGATGAA
GGACGACAGGGCTGCGGATGGTGACAGCGCGAGCACAATGAGCAGCATGA
GAGCTAAAGAGGAGGGCGCGGCGGGCGCGGCGAGTGCGGAGAACACGGAG
AGTGCAGCGAACGTGGAAATCTCGCATGCTGGGGAGAAGGGCGAACTGCC
GCGCCCAAAGCGGAAACGGAGCTCGCGCCAAAGCCAGTCGGGCCCATCGT
CGTGA

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:61276..63030-

>Gcaud3527.t1 ID=Gcaud3527.t1|Name=Gcaud3527.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1755bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:61276..63030- (Gracilaria caudata M_176_S67 male)
TTGGCTGCCTCCAAACCGGCGCCGCTTGTGAACAAGCGCGACACACCCGC
CATTTTCAACGGCCCGGAGGCCGTGTTGGCCGTTTTGCTGGCTGCCGCCG
CCTTGCTGGCTGATTTTGTCCGCAATGTGGCGCGATTGTCTGCCGCAGGC
GCCAAACAAACGCTTGATTTGAACGCTGCGGAGAGCACCGTCGCAGAGTT
GAGGGAGGCCTTGCGCATCAGTAGGGAGGTTTTGGACGAAACTCAAAATC
GTCTAACTGCCGTGTCTGACCAGCGAGCGGATGCGCAGCTTGCGGTGGCC
GAAGCTGATCAAATGCGACAAAAAATGGATAGTGCTAACCAATATGCTCA
GAGCGCGCAGCAACAACTGCAAAAGTTGCAGCGCGCGCTCAGTAGAGTGC
AACAGAAACGCTCTGATACTGCGCAGGAGCAGGAGCGTGTTGATGCAGAG
CGACAACGAGTGGAAACCCAGATTGCTGAGAAGCGTTTGTTGCTGGATCA
ACTCTGCGAGCAGATCGAGACAGCTAGAGACACTGAAATGAAGCTGAAGC
AACGTTTAGAACACCAGCAAGCTTTGTTGACAAAACAGATGCAACAAACC
GGGAACATGCCAGACACCATTGCAGCTGGCACAGAAGCAGAAGATGCTAC
ACTGAGAGGAGGCGATGCATCACGTTCGGAGATGAGTTTACAAGAGATTA
AACGCAATTTGAACGCCGAGCGACTCGCGTTGTCTGCCGACGTTCGTGAA
GCTCAAGTTGCTAGCGAAGCTATGACGCAAGAGAAGGTTGACGAGCTGCA
GTTATTAAAGCGCGAGATGAAGGCGAAGCGGGATGGTATACGCGCTAGAC
TGAAGAAAGCTCAGACTACCGTGGACAGGGAAGAAAATGAAATTCAACGG
CGTGAAGAGGCTATTGATCAGATTCTGGGTTCTATCGAAACGCCAGACGA
TGAGAAAGTGATAATGGATGGCGTTAAGGAAACAGAAAAAAAGAGCACTG
TAAAAAAGCGGAGTCGAAAACCTAAACAGGAAGTGATCGACAATGATGTT
TCGGCGGTCGATGAGAGTGAGGCGAGATCAGTGAAACGAAAGAGCGGGAA
AAAGAGCCCTGCGGACGATAGCACCGTAGAAGAGACACTGAGGACAGCGA
CGGAAGTCGGCGTAGACGCGGGTGAGGATAAGACAGAAGCATTGGAGGAA
GCGTCGACCAGCGAAGAGAAGGATGTCAAAGCGTCAAGTACGCGCGTTGC
AGGAAAAGGGCAAAGAAGGAAGGTGGGAAGATCGAGAAAGGGAGCTGCAT
CCGCAAGCACGGCTCCTAAGACAAGGACTAGAAAATCGACGAGGAAGAAA
CGCAATGAGATGGATGAAGACCAGCCGCTGACATTCCAAGAAGCGTCAGA
GGTGCGTCAAGCGATGATGGATATGCTAGACACGGGGATTGATCCGCAAG
TTCTACAGCAGGAGGGCTACACTTTTACTGAGATGGAGCTACAGCAAATG
CGTTCGCAGTTACCGGGCGGCGCCGAGATTGAGGGAGGCGAAGAGATGAA
GGACGACAGGGCTGCGGATGGTGACAGCGCGAGCACAATGAGCAGCATGA
GAGCTAAAGAGGAGGGCGCGGCGGGCGCGGCGAGTGCGGAGAACACGGAG
AGTGCAGCGAACGTGGAAATCTCGCATGCTGGGGAGAAGGGCGAACTGCC
GCGCCCAAAGCGGAAACGGAGCTCGCGCCAAAGCCAGTCGGGCCCATCGT
CGTGA