Gcaud3501.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3501.t1
Unique NameGcaud3501.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_436_length_25374_cov_4.383380contigNODE_436_length_25374_cov_4.383380:24802..25176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8364.ENSXETP00000063354
Preferred nameCPNE2
PFAMsC2,Copine
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896,GO:0051592,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071944
Evalue7.35e-23
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,38BYU@33154|Opisthokonta,3B953@33208|Metazoa,3CSWC@33213|Bilateria,488P2@7711|Chordata,48ZYI@7742|Vertebrata
Descriptioncellular response to calcium ion
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3501Gcaud3501Gracilaria caudata M_176_S67 malegeneNODE_436_length_25374_cov_4.383380 24802..25176 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3501.t1.stop1Gcaud3501.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_436_length_25374_cov_4.383380 24802..24804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3501.t1.CDS1Gcaud3501.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_436_length_25374_cov_4.383380 24802..25176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3501.t1.exon1Gcaud3501.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_436_length_25374_cov_4.383380 24802..25176 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3501.t1.start1Gcaud3501.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_436_length_25374_cov_4.383380 25174..25176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3501.t1Gcaud3501.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_436_length_25374_cov_4.383380 24802..25176 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3501.t1 ID=Gcaud3501.t1|Name=Gcaud3501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=125bp
MGLCLAQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVI
VGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQPVEELA
ENVLQEVPQRVVDYMVDAGISPGV*
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spliced messenger RNA

>Gcaud3501.t1 ID=Gcaud3501.t1|Name=Gcaud3501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:24802..25176- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTGTGCCTGGCGCAGCCAGTGGCGCAGAACAATCAACACTTTTG
TGTTCTGCTCATCATCACTGATGGTGTAATCTCGGATATGGCTGCGACAG
TGGATACTATTATTGAAGCGTCGCATAGAACACCGATAGCTATTGTGATC
GTGGGTGTGGGAAATGCTGACTTCGCGGCCATGAAGAGACTGGATGGCGA
TAACCACAGACTGACTAGTAACGATGGGACAAAGAAGGCCAAGCATGACA
TTGTGCAGTTTACACAATTCAAGCCCGGACAGCCAGTTGAAGAACTGGCA
GAGAATGTGTTACAAGAGGTGCCCCAGCGGGTAGTTGACTACATGGTTGA
TGCTGGAATTAGTCCTGGTGTATAA
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protein sequence of Gcaud3501.t1

>Gcaud3501.t1 ID=Gcaud3501.t1|Name=Gcaud3501.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=125bp
MGLCLAQPVAQNNQHFCVLLIITDGVISDMAATVDTIIEASHRTPIAIVI
VGVGNADFAAMKRLDGDNHRLTSNDGTKKAKHDIVQFTQFKPGQPVEELA
ENVLQEVPQRVVDYMVDAGISPGV*
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mRNA from alignment at NODE_436_length_25374_cov_4.383380:24802..25176-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3501.t1 ID=Gcaud3501.t1|Name=Gcaud3501.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:24802..25176- (Gracilaria caudata M_176_S67 male)
ATGGGGCTGTGCCTGGCGCAGCCAGTGGCGCAGAACAATCAACACTTTTG
TGTTCTGCTCATCATCACTGATGGTGTAATCTCGGATATGGCTGCGACAG
TGGATACTATTATTGAAGCGTCGCATAGAACACCGATAGCTATTGTGATC
GTGGGTGTGGGAAATGCTGACTTCGCGGCCATGAAGAGACTGGATGGCGA
TAACCACAGACTGACTAGTAACGATGGGACAAAGAAGGCCAAGCATGACA
TTGTGCAGTTTACACAATTCAAGCCCGGACAGCCAGTTGAAGAACTGGCA
GAGAATGTGTTACAAGAGGTGCCCCAGCGGGTAGTTGACTACATGGTTGA
TGCTGGAATTAGTCCTGGTGTATAA
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Coding sequence (CDS) from alignment at NODE_436_length_25374_cov_4.383380:24802..25176-

>Gcaud3501.t1 ID=Gcaud3501.t1|Name=Gcaud3501.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=375bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:24802..25176- (Gracilaria caudata M_176_S67 male)
ATGGGGCTGTGCCTGGCGCAGCCAGTGGCGCAGAACAATCAACACTTTTG
TGTTCTGCTCATCATCACTGATGGTGTAATCTCGGATATGGCTGCGACAG
TGGATACTATTATTGAAGCGTCGCATAGAACACCGATAGCTATTGTGATC
GTGGGTGTGGGAAATGCTGACTTCGCGGCCATGAAGAGACTGGATGGCGA
TAACCACAGACTGACTAGTAACGATGGGACAAAGAAGGCCAAGCATGACA
TTGTGCAGTTTACACAATTCAAGCCCGGACAGCCAGTTGAAGAACTGGCA
GAGAATGTGTTACAAGAGGTGCCCCAGCGGGTAGTTGACTACATGGTTGA
TGCTGGAATTAGTCCTGGTGTATAA
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