Gcaud3500.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3500.t1
Unique Name	Gcaud3500.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_436_length_25374_cov_4.383380	contig	NODE_436_length_25374_cov_4.383380:23582..24622 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	157072.XP_008861913.1
PFAMs	PhyH
Max annot lvl	2759\|Eukaryota
Evalue	4.77e-18
EggNOG OGs	29IAQ@1\|root,2RRHZ@2759\|Eukaryota
Description	Phytanoyl-CoA dioxygenase (PhyH)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3500	Gcaud3500	Gracilaria caudata M_176_S67 male	gene	NODE_436_length_25374_cov_4.383380 23582..24622 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3500.t1	Gcaud3500.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_436_length_25374_cov_4.383380 23582..24622 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3500.t1.start1	Gcaud3500.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_436_length_25374_cov_4.383380 23582..23584 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3500.t1.CDS1	Gcaud3500.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 23582..24071 +
Gcaud3500.t1.CDS2	Gcaud3500.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 24200..24246 +
Gcaud3500.t1.CDS3	Gcaud3500.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 24356..24622 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3500.t1.exon1	Gcaud3500.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 23582..24071 +
Gcaud3500.t1.exon2	Gcaud3500.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 24200..24246 +
Gcaud3500.t1.exon3	Gcaud3500.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 24356..24622 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3500.t1.intron1	Gcaud3500.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_436_length_25374_cov_4.383380 24072..24199 +
Gcaud3500.t1.intron2	Gcaud3500.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_436_length_25374_cov_4.383380 24247..24355 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3500.t1.stop1	Gcaud3500.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_436_length_25374_cov_4.383380 24620..24622 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_436_length_25374_cov_4.383380:23582..24622+
coding sequence from alignment at NODE_436_length_25374_cov_4.383380:23582..24622+

mRNA sequence

>Gcaud3500.t1 ID=Gcaud3500.t1|Name=Gcaud3500.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=268bp
MKLTDDHKRRFIQDGYLHLKHVVSPTHVASLLHVTDHFYDTHQYTLHDSN
KDILPHFPEACEKHSVLTSLPRQTPILSLCEQLLGVGNVTLPGRTQIAYR
PYDERLANRGLKLTDPMYSHWYHVDGGDGKYARTASPFTLLVGVCLSPGQ
TVDENRGQLNVWPTSHVTLHQVLKQRIQAGVITGRNLFGTPKEKPDIGPA
KRVLMNVGDVVLAHHRLGHSGGINLSPHVRKNLYYRVTHRGHDQLLHAVW
SASLWTEYDALHHLVQH*

spliced messenger RNA

>Gcaud3500.t1 ID=Gcaud3500.t1|Name=Gcaud3500.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:23582..24622+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTAACCGATGACCACAAGCGCCGCTTCATCCAGGACGGCTATCT
CCACCTCAAACATGTGGTCTCGCCCACCCACGTCGCCTCCCTTCTGCACG
TCACCGACCACTTCTACGACACGCACCAATACACGCTGCATGACTCAAAC
AAGGACATCTTGCCTCACTTCCCCGAAGCGTGCGAGAAGCATTCCGTGCT
CACCTCTCTTCCGCGCCAAACGCCCATTCTATCTCTATGCGAGCAGCTGC
TCGGTGTTGGAAACGTAACTTTGCCCGGTCGTACGCAAATCGCGTACCGT
CCGTATGACGAGCGCCTTGCGAACAGGGGGCTCAAGCTCACCGATCCTAT
GTACAGCCATTGGTACCACGTCGACGGTGGCGACGGGAAGTATGCCCGCA
CCGCGTCGCCGTTTACACTCCTTGTAGGAGTCTGTTTATCCCCGGGACAA
ACTGTTGATGAGAATCGCGGTCAACTCAACGTGTGGCCAACCTCCCATGT
CACGCTCCATCAAGTGCTGAAGCAACGCATTCAAGCAGGTGTCATCACAG
GACGCAACTTGTTTGGAACGCCGAAAGAAAAGCCTGATATAGGGCCAGCC
AAGCGAGTGCTCATGAATGTGGGCGATGTGGTCCTTGCTCATCATCGATT
GGGCCACTCTGGCGGAATAAATCTTAGCCCTCACGTGCGCAAGAACCTGT
ACTATCGAGTCACCCACAGAGGTCACGATCAACTGTTGCACGCCGTCTGG
AGTGCTTCGTTATGGACGGAGTATGACGCTCTGCATCACCTTGTACAACA
CTAG

protein sequence of Gcaud3500.t1

>Gcaud3500.t1 ID=Gcaud3500.t1|Name=Gcaud3500.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=268bp
MKLTDDHKRRFIQDGYLHLKHVVSPTHVASLLHVTDHFYDTHQYTLHDSN
KDILPHFPEACEKHSVLTSLPRQTPILSLCEQLLGVGNVTLPGRTQIAYR
PYDERLANRGLKLTDPMYSHWYHVDGGDGKYARTASPFTLLVGVCLSPGQ
TVDENRGQLNVWPTSHVTLHQVLKQRIQAGVITGRNLFGTPKEKPDIGPA
KRVLMNVGDVVLAHHRLGHSGGINLSPHVRKNLYYRVTHRGHDQLLHAVW
SASLWTEYDALHHLVQH*

mRNA from alignment at NODE_436_length_25374_cov_4.383380:23582..24622+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3500.t1 ID=Gcaud3500.t1|Name=Gcaud3500.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:23582..24622+ (Gracilaria caudata M_176_S67 male)
ATGAAGCTAACCGATGACCACAAGCGCCGCTTCATCCAGGACGGCTATCT
CCACCTCAAACATGTGGTCTCGCCCACCCACGTCGCCTCCCTTCTGCACG
TCACCGACCACTTCTACGACACGCACCAATACACGCTGCATGACTCAAAC
AAGGACATCTTGCCTCACTTCCCCGAAGCGTGCGAGAAGCATTCCGTGCT
CACCTCTCTTCCGCGCCAAACGCCCATTCTATCTCTATGCGAGCAGCTGC
TCGGTGTTGGAAACGTAACTTTGCCCGGTCGTACGCAAATCGCGTACCGT
CCGTATGACGAGCGCCTTGCGAACAGGGGGCTCAAGCTCACCGATCCTAT
GTACAGCCATTGGTACCACGTCGACGGTGGCGACGGGAAGTATGCCCGCA
CCGCGTCGCCGTTTACACTCCTTGTAGGAGTCTGTTTATCCCCGGGACAA
ACTGTTGATGAGAATCGCGGTCAACTCAACGTGTGGCCAAGTACGTGTCC
CTCAACTTGTATAAAACGTTACCCAAGTTGGGTAACCAACAAATGTCCAG
CAACGCTGCTAATATTTTACACCTCGCTGACAACAATTCACCGTTCGTAA
CAACCCTCCACCACACAGCCTCCCATGTCACGCTCCATCAAGTGCTGAAG
CAACGCATTCAAGCAGTAAGTTGGGCCTCCAATTGAAAAATAATCCACCG
TCATAACTCAAAACTCTACACCTTCTTCACAACGAACATAAGCTTTCTGA
CATTGCCGCCAACCGTGTATGCAGGGTGTCATCACAGGACGCAACTTGTT
TGGAACGCCGAAAGAAAAGCCTGATATAGGGCCAGCCAAGCGAGTGCTCA
TGAATGTGGGCGATGTGGTCCTTGCTCATCATCGATTGGGCCACTCTGGC
GGAATAAATCTTAGCCCTCACGTGCGCAAGAACCTGTACTATCGAGTCAC
CCACAGAGGTCACGATCAACTGTTGCACGCCGTCTGGAGTGCTTCGTTAT
GGACGGAGTATGACGCTCTGCATCACCTTGTACAACACTAG

Coding sequence (CDS) from alignment at NODE_436_length_25374_cov_4.383380:23582..24622+

>Gcaud3500.t1 ID=Gcaud3500.t1|Name=Gcaud3500.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=804bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:23582..24622+ (Gracilaria caudata M_176_S67 male)
ATGAAGCTAACCGATGACCACAAGCGCCGCTTCATCCAGGACGGCTATCT
CCACCTCAAACATGTGGTCTCGCCCACCCACGTCGCCTCCCTTCTGCACG
TCACCGACCACTTCTACGACACGCACCAATACACGCTGCATGACTCAAAC
AAGGACATCTTGCCTCACTTCCCCGAAGCGTGCGAGAAGCATTCCGTGCT
CACCTCTCTTCCGCGCCAAACGCCCATTCTATCTCTATGCGAGCAGCTGC
TCGGTGTTGGAAACGTAACTTTGCCCGGTCGTACGCAAATCGCGTACCGT
CCGTATGACGAGCGCCTTGCGAACAGGGGGCTCAAGCTCACCGATCCTAT
GTACAGCCATTGGTACCACGTCGACGGTGGCGACGGGAAGTATGCCCGCA
CCGCGTCGCCGTTTACACTCCTTGTAGGAGTCTGTTTATCCCCGGGACAA
ACTGTTGATGAGAATCGCGGTCAACTCAACGTGTGGCCAACCTCCCATGT
CACGCTCCATCAAGTGCTGAAGCAACGCATTCAAGCAGGTGTCATCACAG
GACGCAACTTGTTTGGAACGCCGAAAGAAAAGCCTGATATAGGGCCAGCC
AAGCGAGTGCTCATGAATGTGGGCGATGTGGTCCTTGCTCATCATCGATT
GGGCCACTCTGGCGGAATAAATCTTAGCCCTCACGTGCGCAAGAACCTGT
ACTATCGAGTCACCCACAGAGGTCACGATCAACTGTTGCACGCCGTCTGG
AGTGCTTCGTTATGGACGGAGTATGACGCTCTGCATCACCTTGTACAACA
CTAG