Gcaud3383.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3383.t1
Unique NameGcaud3383.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_100_length_51433_cov_4.606891contigNODE_100_length_51433_cov_4.606891:12449..13065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3383Gcaud3383Gracilaria caudata M_176_S67 malegeneNODE_100_length_51433_cov_4.606891 12449..13065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3383.t1Gcaud3383.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_100_length_51433_cov_4.606891 12449..13065 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3383.t1.stop1Gcaud3383.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_100_length_51433_cov_4.606891 12449..12451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3383.t1.CDS1Gcaud3383.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 12449..12543 -
Gcaud3383.t1.CDS2Gcaud3383.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 12643..12720 -
Gcaud3383.t1.CDS3Gcaud3383.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 12885..13065 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3383.t1.exon1Gcaud3383.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 12449..12543 -
Gcaud3383.t1.exon2Gcaud3383.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 12643..12720 -
Gcaud3383.t1.exon3Gcaud3383.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 12885..13065 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3383.t1.intron1Gcaud3383.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_100_length_51433_cov_4.606891 12544..12642 -
Gcaud3383.t1.intron2Gcaud3383.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_100_length_51433_cov_4.606891 12721..12884 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3383.t1.start1Gcaud3383.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_100_length_51433_cov_4.606891 13063..13065 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3383.t1 ID=Gcaud3383.t1|Name=Gcaud3383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=118bp
MLRRKPTFLEINQADIEELDQSRRQMREKLEQDGKGKDQQHPAVFEDHSV
REKAVLGMSLRDVVMGSPHACDWSLWAINPRGSHNRFLHLSGLLIGHPIE
RTLILYITRVALPFPIL*
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spliced messenger RNA

>Gcaud3383.t1 ID=Gcaud3383.t1|Name=Gcaud3383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=354bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:12449..13065- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGTCGCAAACCTACTTTCCTCGAGATCAATCAAGCTGATATAGA
GGAACTTGATCAATCGAGGAGACAAATGCGGGAGAAGCTGGAACAAGACG
GTAAAGGAAAGGATCAACAGCACCCAGCCGTGTTTGAGGACCACTCAGTT
CGAGAAAAGGCAGTTCTAGGAATGTCATTACGAGATGTCGTCATGGGCAG
TCCACATGCTTGCGACTGGTCTTTATGGGCAATAAATCCAAGAGGGAGTC
ATAACAGATTCTTGCATCTATCGGGTCTTTTAATAGGGCATCCGATTGAA
CGCACCTTAATTCTATACATTACTCGCGTCGCACTTCCTTTCCCGATCCT
CTAG
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protein sequence of Gcaud3383.t1

>Gcaud3383.t1 ID=Gcaud3383.t1|Name=Gcaud3383.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=118bp
MLRRKPTFLEINQADIEELDQSRRQMREKLEQDGKGKDQQHPAVFEDHSV
REKAVLGMSLRDVVMGSPHACDWSLWAINPRGSHNRFLHLSGLLIGHPIE
RTLILYITRVALPFPIL*
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mRNA from alignment at NODE_100_length_51433_cov_4.606891:12449..13065-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3383.t1 ID=Gcaud3383.t1|Name=Gcaud3383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=617bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:12449..13065- (Gracilaria caudata M_176_S67 male)
ATGTTACGTCGCAAACCTACTTTCCTCGAGATCAATCAAGCTGATATAGA
GGAACTTGATCAATCGAGGAGACAAATGCGGGAGAAGCTGGAACAAGACG
GTAAAGGAAAGGATCAACAGCACCCAGCCGTGTTTGAGGACCACTCAGTT
CGAGAAAAGGCAGTTCTAGGAATGTCATTACGTGAAAGGCTAGGCCTCAC
AAAGGGAAGTGCTTCACAAGGCTAAATGTAACGAACATTCCTCAATGAGT
TACAAAGTATCAAATTCGGACCGAACTGAGCTCCTGAGAAGCGGAATACA
CCAATCGCAGAGTGATCGGCTCCACAATTTGAGATTTCGCGTCAGGAGAT
GTCGTCATGGGCAGTCCACATGCTTGCGACTGGTCTTTATGGGCAATAAA
TCCAAGAGGGAGTCATAACAGATGTAGGTGATGCGGTAATCATTTGGATG
CGTTGTTTTGATGTGTTCAGCTAATGTCTACGATATCCCTAGTGAACTCC
GTTGTTAAACAGTCTGCTCTAGTCTTGCATCTATCGGGTCTTTTAATAGG
GCATCCGATTGAACGCACCTTAATTCTATACATTACTCGCGTCGCACTTC
CTTTCCCGATCCTCTAG
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Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:12449..13065-

>Gcaud3383.t1 ID=Gcaud3383.t1|Name=Gcaud3383.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=354bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:12449..13065- (Gracilaria caudata M_176_S67 male)
ATGTTACGTCGCAAACCTACTTTCCTCGAGATCAATCAAGCTGATATAGA
GGAACTTGATCAATCGAGGAGACAAATGCGGGAGAAGCTGGAACAAGACG
GTAAAGGAAAGGATCAACAGCACCCAGCCGTGTTTGAGGACCACTCAGTT
CGAGAAAAGGCAGTTCTAGGAATGTCATTACGAGATGTCGTCATGGGCAG
TCCACATGCTTGCGACTGGTCTTTATGGGCAATAAATCCAAGAGGGAGTC
ATAACAGATTCTTGCATCTATCGGGTCTTTTAATAGGGCATCCGATTGAA
CGCACCTTAATTCTATACATTACTCGCGTCGCACTTCCTTTCCCGATCCT
CTAG
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