Gcaud3326.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3326.t1
Unique Name	Gcaud3326.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	204

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_135_length_45127_cov_4.991851	contig	NODE_135_length_45127_cov_4.991851:16897..17508 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3326	Gcaud3326	Gracilaria caudata M_176_S67 male	gene	NODE_135_length_45127_cov_4.991851 16897..17508 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3326.t1.stop1	Gcaud3326.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_135_length_45127_cov_4.991851 16897..16899 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3326.t1.CDS1	Gcaud3326.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_135_length_45127_cov_4.991851 16897..17508 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3326.t1.exon1	Gcaud3326.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_135_length_45127_cov_4.991851 16897..17508 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3326.t1.start1	Gcaud3326.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_135_length_45127_cov_4.991851 17506..17508 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3326.t1	Gcaud3326.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_135_length_45127_cov_4.991851 16897..17508 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_135_length_45127_cov_4.991851:16897..17508-
coding sequence from alignment at NODE_135_length_45127_cov_4.991851:16897..17508-

mRNA sequence

>Gcaud3326.t1 ID=Gcaud3326.t1|Name=Gcaud3326.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=204bp
MKLVYSILPLLVLKLACPALVNAIPWSATKQYATFEWCEVRGDYGLCDFA
LEGVHAVYDHVAWGTGNYSLNGYVSGPFTPKIVKKNNDYQTTLGYVKSVD
ALRDVFQCEIGAGGGKVCNFMTVPGQLFGTANIPGVRGTGITRMKGSVMG
RYMPNGACVPMYLTEYEVLDTSVSPPRVKDVVKMPARRARIMNQCVLVYT
EFY*

spliced messenger RNA

>Gcaud3326.t1 ID=Gcaud3326.t1|Name=Gcaud3326.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:16897..17508- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCGTATACTCTATCCTCCCCCTCCTTGTCCTGAAATTGGCGTG
CCCAGCCCTGGTAAATGCCATACCGTGGTCTGCAACAAAGCAGTACGCAA
CTTTCGAATGGTGCGAAGTTCGTGGCGATTATGGTCTTTGCGACTTTGCT
CTCGAAGGAGTGCATGCCGTTTACGACCACGTAGCATGGGGTACTGGTAA
TTACTCGTTGAATGGATATGTTTCCGGACCTTTCACACCGAAGATCGTGA
AGAAGAACAACGATTACCAAACCACTTTAGGATACGTCAAATCTGTGGAT
GCTCTCCGTGATGTGTTTCAGTGTGAGATTGGCGCAGGTGGGGGTAAGGT
ATGTAACTTCATGACCGTCCCAGGACAGCTGTTTGGCACTGCAAACATTC
CTGGTGTTCGTGGGACTGGAATTACGCGTATGAAGGGTTCAGTGATGGGT
AGATACATGCCGAACGGGGCTTGCGTCCCGATGTACTTGACTGAGTACGA
AGTTCTCGATACTTCTGTCTCACCGCCGAGAGTGAAGGACGTTGTGAAGA
TGCCAGCTCGAAGAGCTCGTATCATGAATCAATGTGTGCTGGTCTACACT
GAATTCTATTAG

protein sequence of Gcaud3326.t1

>Gcaud3326.t1 ID=Gcaud3326.t1|Name=Gcaud3326.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=204bp
MKLVYSILPLLVLKLACPALVNAIPWSATKQYATFEWCEVRGDYGLCDFA
LEGVHAVYDHVAWGTGNYSLNGYVSGPFTPKIVKKNNDYQTTLGYVKSVD
ALRDVFQCEIGAGGGKVCNFMTVPGQLFGTANIPGVRGTGITRMKGSVMG
RYMPNGACVPMYLTEYEVLDTSVSPPRVKDVVKMPARRARIMNQCVLVYT
EFY*

mRNA from alignment at NODE_135_length_45127_cov_4.991851:16897..17508-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3326.t1 ID=Gcaud3326.t1|Name=Gcaud3326.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:16897..17508- (Gracilaria caudata M_176_S67 male)
ATGAAGCTCGTATACTCTATCCTCCCCCTCCTTGTCCTGAAATTGGCGTG
CCCAGCCCTGGTAAATGCCATACCGTGGTCTGCAACAAAGCAGTACGCAA
CTTTCGAATGGTGCGAAGTTCGTGGCGATTATGGTCTTTGCGACTTTGCT
CTCGAAGGAGTGCATGCCGTTTACGACCACGTAGCATGGGGTACTGGTAA
TTACTCGTTGAATGGATATGTTTCCGGACCTTTCACACCGAAGATCGTGA
AGAAGAACAACGATTACCAAACCACTTTAGGATACGTCAAATCTGTGGAT
GCTCTCCGTGATGTGTTTCAGTGTGAGATTGGCGCAGGTGGGGGTAAGGT
ATGTAACTTCATGACCGTCCCAGGACAGCTGTTTGGCACTGCAAACATTC
CTGGTGTTCGTGGGACTGGAATTACGCGTATGAAGGGTTCAGTGATGGGT
AGATACATGCCGAACGGGGCTTGCGTCCCGATGTACTTGACTGAGTACGA
AGTTCTCGATACTTCTGTCTCACCGCCGAGAGTGAAGGACGTTGTGAAGA
TGCCAGCTCGAAGAGCTCGTATCATGAATCAATGTGTGCTGGTCTACACT
GAATTCTATTAG

Coding sequence (CDS) from alignment at NODE_135_length_45127_cov_4.991851:16897..17508-

>Gcaud3326.t1 ID=Gcaud3326.t1|Name=Gcaud3326.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=612bp|location=Sequence derived from alignment at NODE_135_length_45127_cov_4.991851:16897..17508- (Gracilaria caudata M_176_S67 male)
ATGAAGCTCGTATACTCTATCCTCCCCCTCCTTGTCCTGAAATTGGCGTG
CCCAGCCCTGGTAAATGCCATACCGTGGTCTGCAACAAAGCAGTACGCAA
CTTTCGAATGGTGCGAAGTTCGTGGCGATTATGGTCTTTGCGACTTTGCT
CTCGAAGGAGTGCATGCCGTTTACGACCACGTAGCATGGGGTACTGGTAA
TTACTCGTTGAATGGATATGTTTCCGGACCTTTCACACCGAAGATCGTGA
AGAAGAACAACGATTACCAAACCACTTTAGGATACGTCAAATCTGTGGAT
GCTCTCCGTGATGTGTTTCAGTGTGAGATTGGCGCAGGTGGGGGTAAGGT
ATGTAACTTCATGACCGTCCCAGGACAGCTGTTTGGCACTGCAAACATTC
CTGGTGTTCGTGGGACTGGAATTACGCGTATGAAGGGTTCAGTGATGGGT
AGATACATGCCGAACGGGGCTTGCGTCCCGATGTACTTGACTGAGTACGA
AGTTCTCGATACTTCTGTCTCACCGCCGAGAGTGAAGGACGTTGTGAAGA
TGCCAGCTCGAAGAGCTCGTATCATGAATCAATGTGTGCTGGTCTACACT
GAATTCTATTAG