Gcaud3317.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3317.t1
Unique Name	Gcaud3317.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	413

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_375_length_27991_cov_4.438244	contig	NODE_375_length_27991_cov_4.438244:19483..20721 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3317	Gcaud3317	Gracilaria caudata M_176_S67 male	gene	NODE_375_length_27991_cov_4.438244 19483..20721 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3317.t1.start1	Gcaud3317.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_375_length_27991_cov_4.438244 19483..19485 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3317.t1.CDS1	Gcaud3317.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_375_length_27991_cov_4.438244 19483..20721 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3317.t1.exon1	Gcaud3317.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_375_length_27991_cov_4.438244 19483..20721 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3317.t1.stop1	Gcaud3317.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_375_length_27991_cov_4.438244 20719..20721 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3317.t1	Gcaud3317.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_375_length_27991_cov_4.438244 19483..20721 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_375_length_27991_cov_4.438244:19483..20721+
coding sequence from alignment at NODE_375_length_27991_cov_4.438244:19483..20721+

mRNA sequence

>Gcaud3317.t1 ID=Gcaud3317.t1|Name=Gcaud3317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=413bp
MDIMEVNITQFLDIKNQPFRRVALDYSHLPYADVLDALAATIIVTALTAL
MMHLTTGIYGMSTRSISIKSLYGGSFLSDINHLLFMFLGKRNAKHKVQWT
PRIVAFILLLLLSLAEALLFLSQSTKTERYNLEDLHIRRSQLKPYVGKPF
LSTLSRSCTPMIQSQYPIWYSPLDLCVTHPYTERFVPRKQEVDRAMSISV
NVRYERGELSFIVITADYGYSLNINIVLHSAPRTIRMNVTNLITDPEELL
TFLTDGAAQLLGCPNASEVRVNPDFPDVFSRFLHNCREVDEESLLIGERL
VLSTLSLSEEFISATDFYSVEATNFTTKHTPITRASVDGYAVREVVRVRG
FILWIMATTLLMINFMLSCIAPDLEMAKSVAVASYLNWANIPFSGSQHVC
VPSPKAAEQNSC*

spliced messenger RNA

>Gcaud3317.t1 ID=Gcaud3317.t1|Name=Gcaud3317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:19483..20721+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCATGGAAGTAAACATCACTCAGTTCCTGGACATCAAGAACCA
ACCGTTTCGCCGCGTAGCACTAGACTACTCACATTTACCCTACGCAGACG
TATTGGACGCGCTTGCGGCGACGATAATCGTAACCGCATTGACTGCCTTG
ATGATGCATCTCACCACCGGCATATACGGAATGTCAACTCGATCTATCTC
TATAAAGTCGTTGTATGGTGGCTCGTTTCTGTCCGACATCAATCATCTTC
TCTTCATGTTTCTAGGGAAAAGGAATGCAAAGCACAAAGTGCAGTGGACT
CCGAGAATCGTGGCTTTCATTCTTCTATTATTGTTATCGCTTGCTGAAGC
CCTGCTTTTTCTTTCGCAGTCAACCAAAACCGAAAGATACAACTTGGAAG
ATCTCCACATAAGAAGATCGCAACTGAAACCATATGTTGGAAAGCCGTTT
CTGTCTACTCTCTCGCGAAGTTGCACACCCATGATACAATCACAGTATCC
TATTTGGTACTCGCCGTTAGATTTATGCGTCACTCATCCCTATACGGAGA
GATTTGTTCCCAGGAAGCAGGAGGTAGACCGTGCAATGTCCATTAGCGTT
AACGTGCGATATGAAAGGGGTGAACTATCGTTTATCGTAATCACTGCAGA
CTATGGCTATTCACTCAACATTAATATTGTACTACACTCTGCACCACGTA
CAATCAGGATGAATGTGACAAACTTGATCACTGATCCAGAAGAACTTCTG
ACCTTTCTCACAGATGGTGCAGCCCAGTTGCTCGGCTGCCCCAACGCTTC
GGAAGTGCGGGTCAATCCAGACTTCCCGGATGTGTTTAGCAGGTTTCTTC
ATAATTGTCGTGAAGTCGATGAAGAATCTCTCTTAATCGGTGAAAGGTTG
GTGTTGAGCACCTTATCGCTATCTGAAGAGTTCATTTCCGCAACTGATTT
CTATTCCGTGGAGGCGACAAACTTTACAACAAAGCACACTCCAATCACGC
GAGCTAGTGTAGATGGCTATGCTGTGCGCGAAGTAGTTCGAGTTCGTGGG
TTCATTTTGTGGATTATGGCGACTACGCTGTTGATGATCAATTTCATGTT
AAGCTGTATTGCGCCGGATCTGGAAATGGCGAAATCAGTTGCGGTTGCGA
GCTATCTTAACTGGGCCAACATTCCGTTTTCTGGCTCCCAACATGTATGT
GTCCCTTCACCGAAGGCTGCTGAACAAAACTCGTGTTAG

protein sequence of Gcaud3317.t1

>Gcaud3317.t1 ID=Gcaud3317.t1|Name=Gcaud3317.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=413bp
MDIMEVNITQFLDIKNQPFRRVALDYSHLPYADVLDALAATIIVTALTAL
MMHLTTGIYGMSTRSISIKSLYGGSFLSDINHLLFMFLGKRNAKHKVQWT
PRIVAFILLLLLSLAEALLFLSQSTKTERYNLEDLHIRRSQLKPYVGKPF
LSTLSRSCTPMIQSQYPIWYSPLDLCVTHPYTERFVPRKQEVDRAMSISV
NVRYERGELSFIVITADYGYSLNINIVLHSAPRTIRMNVTNLITDPEELL
TFLTDGAAQLLGCPNASEVRVNPDFPDVFSRFLHNCREVDEESLLIGERL
VLSTLSLSEEFISATDFYSVEATNFTTKHTPITRASVDGYAVREVVRVRG
FILWIMATTLLMINFMLSCIAPDLEMAKSVAVASYLNWANIPFSGSQHVC
VPSPKAAEQNSC*

mRNA from alignment at NODE_375_length_27991_cov_4.438244:19483..20721+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3317.t1 ID=Gcaud3317.t1|Name=Gcaud3317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:19483..20721+ (Gracilaria caudata M_176_S67 male)
ATGGACATCATGGAAGTAAACATCACTCAGTTCCTGGACATCAAGAACCA
ACCGTTTCGCCGCGTAGCACTAGACTACTCACATTTACCCTACGCAGACG
TATTGGACGCGCTTGCGGCGACGATAATCGTAACCGCATTGACTGCCTTG
ATGATGCATCTCACCACCGGCATATACGGAATGTCAACTCGATCTATCTC
TATAAAGTCGTTGTATGGTGGCTCGTTTCTGTCCGACATCAATCATCTTC
TCTTCATGTTTCTAGGGAAAAGGAATGCAAAGCACAAAGTGCAGTGGACT
CCGAGAATCGTGGCTTTCATTCTTCTATTATTGTTATCGCTTGCTGAAGC
CCTGCTTTTTCTTTCGCAGTCAACCAAAACCGAAAGATACAACTTGGAAG
ATCTCCACATAAGAAGATCGCAACTGAAACCATATGTTGGAAAGCCGTTT
CTGTCTACTCTCTCGCGAAGTTGCACACCCATGATACAATCACAGTATCC
TATTTGGTACTCGCCGTTAGATTTATGCGTCACTCATCCCTATACGGAGA
GATTTGTTCCCAGGAAGCAGGAGGTAGACCGTGCAATGTCCATTAGCGTT
AACGTGCGATATGAAAGGGGTGAACTATCGTTTATCGTAATCACTGCAGA
CTATGGCTATTCACTCAACATTAATATTGTACTACACTCTGCACCACGTA
CAATCAGGATGAATGTGACAAACTTGATCACTGATCCAGAAGAACTTCTG
ACCTTTCTCACAGATGGTGCAGCCCAGTTGCTCGGCTGCCCCAACGCTTC
GGAAGTGCGGGTCAATCCAGACTTCCCGGATGTGTTTAGCAGGTTTCTTC
ATAATTGTCGTGAAGTCGATGAAGAATCTCTCTTAATCGGTGAAAGGTTG
GTGTTGAGCACCTTATCGCTATCTGAAGAGTTCATTTCCGCAACTGATTT
CTATTCCGTGGAGGCGACAAACTTTACAACAAAGCACACTCCAATCACGC
GAGCTAGTGTAGATGGCTATGCTGTGCGCGAAGTAGTTCGAGTTCGTGGG
TTCATTTTGTGGATTATGGCGACTACGCTGTTGATGATCAATTTCATGTT
AAGCTGTATTGCGCCGGATCTGGAAATGGCGAAATCAGTTGCGGTTGCGA
GCTATCTTAACTGGGCCAACATTCCGTTTTCTGGCTCCCAACATGTATGT
GTCCCTTCACCGAAGGCTGCTGAACAAAACTCGTGTTAG

Coding sequence (CDS) from alignment at NODE_375_length_27991_cov_4.438244:19483..20721+

>Gcaud3317.t1 ID=Gcaud3317.t1|Name=Gcaud3317.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1239bp|location=Sequence derived from alignment at NODE_375_length_27991_cov_4.438244:19483..20721+ (Gracilaria caudata M_176_S67 male)
ATGGACATCATGGAAGTAAACATCACTCAGTTCCTGGACATCAAGAACCA
ACCGTTTCGCCGCGTAGCACTAGACTACTCACATTTACCCTACGCAGACG
TATTGGACGCGCTTGCGGCGACGATAATCGTAACCGCATTGACTGCCTTG
ATGATGCATCTCACCACCGGCATATACGGAATGTCAACTCGATCTATCTC
TATAAAGTCGTTGTATGGTGGCTCGTTTCTGTCCGACATCAATCATCTTC
TCTTCATGTTTCTAGGGAAAAGGAATGCAAAGCACAAAGTGCAGTGGACT
CCGAGAATCGTGGCTTTCATTCTTCTATTATTGTTATCGCTTGCTGAAGC
CCTGCTTTTTCTTTCGCAGTCAACCAAAACCGAAAGATACAACTTGGAAG
ATCTCCACATAAGAAGATCGCAACTGAAACCATATGTTGGAAAGCCGTTT
CTGTCTACTCTCTCGCGAAGTTGCACACCCATGATACAATCACAGTATCC
TATTTGGTACTCGCCGTTAGATTTATGCGTCACTCATCCCTATACGGAGA
GATTTGTTCCCAGGAAGCAGGAGGTAGACCGTGCAATGTCCATTAGCGTT
AACGTGCGATATGAAAGGGGTGAACTATCGTTTATCGTAATCACTGCAGA
CTATGGCTATTCACTCAACATTAATATTGTACTACACTCTGCACCACGTA
CAATCAGGATGAATGTGACAAACTTGATCACTGATCCAGAAGAACTTCTG
ACCTTTCTCACAGATGGTGCAGCCCAGTTGCTCGGCTGCCCCAACGCTTC
GGAAGTGCGGGTCAATCCAGACTTCCCGGATGTGTTTAGCAGGTTTCTTC
ATAATTGTCGTGAAGTCGATGAAGAATCTCTCTTAATCGGTGAAAGGTTG
GTGTTGAGCACCTTATCGCTATCTGAAGAGTTCATTTCCGCAACTGATTT
CTATTCCGTGGAGGCGACAAACTTTACAACAAAGCACACTCCAATCACGC
GAGCTAGTGTAGATGGCTATGCTGTGCGCGAAGTAGTTCGAGTTCGTGGG
TTCATTTTGTGGATTATGGCGACTACGCTGTTGATGATCAATTTCATGTT
AAGCTGTATTGCGCCGGATCTGGAAATGGCGAAATCAGTTGCGGTTGCGA
GCTATCTTAACTGGGCCAACATTCCGTTTTCTGGCTCCCAACATGTATGT
GTCCCTTCACCGAAGGCTGCTGAACAAAACTCGTGTTAG