Gcaud3297.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3297.t1
Unique NameGcaud3297.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_84_length_54915_cov_4.457829contigNODE_84_length_54915_cov_4.457829:44150..44694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702349.1
Preferred nameUBTD2
PFAMsUBD,ubiquitin
Max annot lvl2759|Eukaryota
KEGG koko:K13123
KEGG ModuleM00355
Evalue1.48e-32
EggNOG OGsKOG0013@1|root,KOG0013@2759|Eukaryota
DescriptionUbiquitin-binding domain
COG categoryADK
BRITEko00000,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3297Gcaud3297Gracilaria caudata M_176_S67 malegeneNODE_84_length_54915_cov_4.457829 44150..44694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3297.t1Gcaud3297.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_84_length_54915_cov_4.457829 44150..44694 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3297.t1.start1Gcaud3297.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_84_length_54915_cov_4.457829 44150..44152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3297.t1.CDS1Gcaud3297.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_84_length_54915_cov_4.457829 44150..44362 +
Gcaud3297.t1.CDS2Gcaud3297.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_84_length_54915_cov_4.457829 44455..44694 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3297.t1.exon1Gcaud3297.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_84_length_54915_cov_4.457829 44150..44362 +
Gcaud3297.t1.exon2Gcaud3297.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_84_length_54915_cov_4.457829 44455..44694 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3297.t1.intron1Gcaud3297.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_84_length_54915_cov_4.457829 44363..44454 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3297.t1.stop1Gcaud3297.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_84_length_54915_cov_4.457829 44692..44694 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3297.t1 ID=Gcaud3297.t1|Name=Gcaud3297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=151bp
MGCASSKEGQQAGDAELPQWDGHIRSPKAWRLEPAISSQHLSRLRNEFWE
TRVEGRSEMWQALRFAAESESDELRDETVKAAGLRPANRRCTMQSMFDEL
GALYEIPMYALIDPTNLDEQPVHEEFKDAAKAVTDYVNAHEKARRTPRAL
*
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spliced messenger RNA

>Gcaud3297.t1 ID=Gcaud3297.t1|Name=Gcaud3297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:44150..44694+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGTGCTTCGTCGAAGGAGGGGCAGCAGGCGGGCGACGCAGAACT
TCCGCAATGGGACGGCCATATTCGCTCTCCAAAGGCGTGGCGACTTGAAC
CAGCCATCTCGTCGCAGCATCTTTCGCGGTTGCGAAACGAGTTTTGGGAG
ACTAGGGTTGAAGGTCGTTCCGAAATGTGGCAGGCTCTTCGCTTCGCTGC
CGAGTCTGAATCCGATGAATTGAGAGATGAGACTGTGAAGGCGGCCGGGT
TGAGACCCGCGAATCGACGATGTACCATGCAAAGCATGTTTGATGAGTTG
GGTGCCTTGTATGAGATTCCTATGTATGCTCTTATTGATCCCACGAACTT
GGATGAACAGCCAGTGCATGAGGAGTTTAAAGACGCTGCTAAGGCTGTTA
CTGATTATGTCAATGCACACGAGAAAGCGAGAAGAACTCCAAGAGCTTTG
TAA
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protein sequence of Gcaud3297.t1

>Gcaud3297.t1 ID=Gcaud3297.t1|Name=Gcaud3297.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=151bp
MGCASSKEGQQAGDAELPQWDGHIRSPKAWRLEPAISSQHLSRLRNEFWE
TRVEGRSEMWQALRFAAESESDELRDETVKAAGLRPANRRCTMQSMFDEL
GALYEIPMYALIDPTNLDEQPVHEEFKDAAKAVTDYVNAHEKARRTPRAL
*
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mRNA from alignment at NODE_84_length_54915_cov_4.457829:44150..44694+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3297.t1 ID=Gcaud3297.t1|Name=Gcaud3297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=545bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:44150..44694+ (Gracilaria caudata M_176_S67 male)
ATGGGCTGTGCTTCGTCGAAGGAGGGGCAGCAGGCGGGCGACGCAGAACT
TCCGCAATGGGACGGCCATATTCGCTCTCCAAAGGCGTGGCGACTTGAAC
CAGCCATCTCGTCGCAGCATCTTTCGCGGTTGCGAAACGAGTTTTGGGAG
ACTAGGGTTGAAGGTCGTTCCGAAATGTGGCAGGCTCTTCGCTTCGCTGC
CGAGTCTGAATCCGTACGTACCACAATGTGCAATCATCGACTTGCGAGTT
AACGTGAACTGACTCTTACTTATATCTTCTGTTTTCTTGGCTTGGCTATA
TGTAGGATGAATTGAGAGATGAGACTGTGAAGGCGGCCGGGTTGAGACCC
GCGAATCGACGATGTACCATGCAAAGCATGTTTGATGAGTTGGGTGCCTT
GTATGAGATTCCTATGTATGCTCTTATTGATCCCACGAACTTGGATGAAC
AGCCAGTGCATGAGGAGTTTAAAGACGCTGCTAAGGCTGTTACTGATTAT
GTCAATGCACACGAGAAAGCGAGAAGAACTCCAAGAGCTTTGTAA
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Coding sequence (CDS) from alignment at NODE_84_length_54915_cov_4.457829:44150..44694+

>Gcaud3297.t1 ID=Gcaud3297.t1|Name=Gcaud3297.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=453bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:44150..44694+ (Gracilaria caudata M_176_S67 male)
ATGGGCTGTGCTTCGTCGAAGGAGGGGCAGCAGGCGGGCGACGCAGAACT
TCCGCAATGGGACGGCCATATTCGCTCTCCAAAGGCGTGGCGACTTGAAC
CAGCCATCTCGTCGCAGCATCTTTCGCGGTTGCGAAACGAGTTTTGGGAG
ACTAGGGTTGAAGGTCGTTCCGAAATGTGGCAGGCTCTTCGCTTCGCTGC
CGAGTCTGAATCCGATGAATTGAGAGATGAGACTGTGAAGGCGGCCGGGT
TGAGACCCGCGAATCGACGATGTACCATGCAAAGCATGTTTGATGAGTTG
GGTGCCTTGTATGAGATTCCTATGTATGCTCTTATTGATCCCACGAACTT
GGATGAACAGCCAGTGCATGAGGAGTTTAAAGACGCTGCTAAGGCTGTTA
CTGATTATGTCAATGCACACGAGAAAGCGAGAAGAACTCCAAGAGCTTTG
TAA
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