Gcaud3275.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3275.t1
Unique Name	Gcaud3275.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	785

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_327_length_29891_cov_4.655638	contig	NODE_327_length_29891_cov_4.655638:22720..25074 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3275	Gcaud3275	Gracilaria caudata M_176_S67 male	gene	NODE_327_length_29891_cov_4.655638 22720..25074 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3275.t1.start1	Gcaud3275.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_327_length_29891_cov_4.655638 22720..22722 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3275.t1.CDS1	Gcaud3275.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_327_length_29891_cov_4.655638 22720..25074 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3275.t1.exon1	Gcaud3275.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_327_length_29891_cov_4.655638 22720..25074 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3275.t1.stop1	Gcaud3275.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_327_length_29891_cov_4.655638 25072..25074 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3275.t1	Gcaud3275.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_327_length_29891_cov_4.655638 22720..25074 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_327_length_29891_cov_4.655638:22720..25074+
coding sequence from alignment at NODE_327_length_29891_cov_4.655638:22720..25074+

mRNA sequence

>Gcaud3275.t1 ID=Gcaud3275.t1|Name=Gcaud3275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=785bp
MEATTPVISSTPVSSAKPSSTVSMSSASDGILIHPDQSSSQHESNATSPT
SSGAASLLPSLSFSSSPSPSRSVDAVAPIASTAPQQTSSSSPSHSAEVRV
SAPPSITEPASLPISVSSLPSPPASTPKPRESSAAPEVSPNIEDVEETEN
QSNHLTIGGTITVSDFSRGPLLNRTGERIKDTPFSDVLILLSMNGSRRST
VPTIARQESLNVSQSVVTVRACLERLVGNGESTPLLSLHAFERPSLKETD
IIVSRGFKSSFQLNETYTCLMGLALEIPADTLSAMFLVLSARLSSGSAVV
KISAAQSTNLVAASPLVWNRNLLSTSEKANASLGNAEKAKVFIISSWPNL
KHVELEDSQVDSTGLHYIYGSISRFPNPICDDSGTQLIASIVGKQLGIGP
NQVTIIPIPVRNCEEPYSLSVILNALKHVTSSVGSSSSSNSFLIFDDQLQ
ESGFLNDSSLLKEFEVLADAGVVTLVPGKACHELQPSYVAVGAFGHHVQD
GGNSSSAEQFVIRSSKCSSMFDVFGPGDFSTAASIRGPESYTNLNWGSNV
AAGGVLGVFLMMSLEQNLNPNITEVKALLKGLTRTSPVIGDLNTSEFNGS
GPALPLLGAATSLSDLRKSFRELASSNSEGKHFLVTFLSKLPIGAIIGIC
LVVCLLLIVIIVGAVFVSRRRRESDDYEGEPTLEEDIESAAVTDNSVSET
HSDRALKRPPTIVDILSPTPLRVPPQRQDTDKGRPPQPQPVRVPVVQRLL
SLNRSKESPIPKGDKASWFATPRSEKPGNGTFNR*

spliced messenger RNA

>Gcaud3275.t1 ID=Gcaud3275.t1|Name=Gcaud3275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2355bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:22720..25074+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCACGACGCCTGTAATCAGCTCAACACCTGTGTCTTCTGCCAA
ACCGTCGTCGACTGTTTCGATGTCATCTGCCTCGGACGGCATTTTGATCC
ATCCCGATCAGTCTTCATCTCAACATGAATCTAATGCAACAAGCCCTACT
AGCTCGGGTGCAGCGTCCTTGCTACCATCCTTGTCTTTTTCTTCATCCCC
GAGTCCTTCCCGCAGTGTCGATGCTGTCGCTCCTATTGCGTCGACAGCTC
CGCAACAGACTTCTTCAAGTTCACCAAGCCATTCAGCTGAGGTTAGAGTC
TCAGCGCCACCGTCTATAACAGAACCTGCGTCCCTTCCCATTTCAGTGTC
CAGCTTACCATCGCCACCCGCTTCCACACCGAAGCCGAGAGAGAGTTCAG
CAGCACCCGAAGTCTCGCCAAATATCGAGGATGTTGAGGAGACGGAGAAT
CAATCCAATCATCTTACTATCGGTGGAACGATTACTGTTTCAGACTTTTC
GCGTGGACCCCTATTGAATAGAACTGGTGAACGTATCAAAGATACTCCAT
TTTCTGATGTTCTTATCCTCTTATCCATGAACGGCAGCAGAAGATCTACA
GTGCCAACCATCGCGCGTCAGGAATCCCTGAACGTGTCTCAGTCTGTTGT
AACTGTCAGAGCATGTCTGGAGAGGTTGGTCGGGAATGGAGAATCGACAC
CATTGTTATCTCTGCACGCATTTGAACGTCCATCGCTAAAGGAAACTGAT
ATCATAGTTTCGCGCGGCTTCAAGAGCTCTTTTCAACTCAACGAAACCTA
CACTTGCCTTATGGGACTAGCCCTCGAGATACCCGCCGATACTCTGAGCG
CAATGTTTCTTGTGCTCTCAGCACGTCTCTCTTCTGGATCTGCAGTTGTA
AAGATCTCGGCCGCTCAGTCCACGAACTTGGTAGCGGCATCTCCGTTAGT
TTGGAATCGAAACCTGTTATCAACATCAGAAAAGGCCAATGCAAGCCTTG
GTAATGCTGAGAAAGCGAAAGTCTTCATCATTTCCTCTTGGCCCAATTTG
AAACATGTTGAACTAGAAGATTCGCAAGTAGATAGCACTGGCCTTCATTA
TATCTATGGATCAATCTCTCGCTTCCCAAATCCAATCTGCGATGATTCTG
GAACACAACTCATAGCCTCTATCGTTGGAAAACAACTTGGCATTGGTCCG
AATCAGGTCACCATCATTCCCATACCGGTTCGGAATTGTGAAGAGCCATA
TTCCCTTAGCGTAATTCTCAACGCCCTTAAGCATGTGACGTCAAGCGTGG
GAAGTTCATCATCATCGAATTCTTTTCTTATATTCGATGACCAACTCCAA
GAAAGTGGTTTCTTGAACGATTCATCACTGCTAAAGGAATTTGAAGTGCT
GGCAGACGCAGGAGTGGTTACTTTGGTCCCAGGAAAAGCATGCCATGAGC
TGCAGCCATCATATGTTGCTGTTGGGGCGTTTGGTCATCATGTTCAAGAT
GGAGGGAATTCGTCCTCTGCGGAACAGTTTGTAATTCGGTCATCTAAGTG
TTCAAGTATGTTCGATGTTTTCGGACCTGGAGATTTCAGCACCGCAGCCT
CCATTAGGGGACCAGAATCATATACGAACCTCAACTGGGGTTCAAACGTT
GCAGCGGGAGGCGTTTTGGGGGTGTTTTTGATGATGTCTCTCGAGCAGAA
TCTGAACCCAAACATTACCGAGGTAAAAGCCTTGCTAAAGGGGCTGACAA
GGACGAGCCCCGTGATTGGCGATCTGAACACCAGTGAATTCAACGGATCC
GGACCTGCGCTGCCACTCCTTGGCGCCGCTACATCGCTGTCCGATCTGAG
AAAGTCCTTCCGAGAACTGGCGTCGTCGAATTCCGAGGGGAAGCACTTCC
TAGTTACTTTCCTGTCAAAACTTCCCATCGGGGCCATAATTGGGATATGT
TTAGTTGTTTGCCTTCTTTTGATCGTGATCATCGTAGGGGCGGTTTTCGT
ATCTCGGCGCAGAAGAGAATCGGACGACTACGAAGGAGAACCTACACTCG
AAGAAGATATCGAAAGCGCTGCAGTAACAGATAACTCGGTTTCTGAGACT
CACAGTGATCGTGCTCTCAAGCGACCTCCCACAATAGTAGATATTCTATC
GCCAACCCCACTTCGAGTGCCGCCCCAGAGACAAGATACGGACAAGGGCC
GCCCTCCGCAGCCGCAGCCTGTTCGTGTTCCTGTCGTACAAAGATTGTTA
TCGCTAAATAGAAGTAAGGAATCTCCCATTCCTAAGGGTGATAAGGCCTC
GTGGTTTGCCACACCCAGGAGCGAAAAACCTGGAAATGGTACATTTAACA
GATGA

protein sequence of Gcaud3275.t1

>Gcaud3275.t1 ID=Gcaud3275.t1|Name=Gcaud3275.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=785bp
MEATTPVISSTPVSSAKPSSTVSMSSASDGILIHPDQSSSQHESNATSPT
SSGAASLLPSLSFSSSPSPSRSVDAVAPIASTAPQQTSSSSPSHSAEVRV
SAPPSITEPASLPISVSSLPSPPASTPKPRESSAAPEVSPNIEDVEETEN
QSNHLTIGGTITVSDFSRGPLLNRTGERIKDTPFSDVLILLSMNGSRRST
VPTIARQESLNVSQSVVTVRACLERLVGNGESTPLLSLHAFERPSLKETD
IIVSRGFKSSFQLNETYTCLMGLALEIPADTLSAMFLVLSARLSSGSAVV
KISAAQSTNLVAASPLVWNRNLLSTSEKANASLGNAEKAKVFIISSWPNL
KHVELEDSQVDSTGLHYIYGSISRFPNPICDDSGTQLIASIVGKQLGIGP
NQVTIIPIPVRNCEEPYSLSVILNALKHVTSSVGSSSSSNSFLIFDDQLQ
ESGFLNDSSLLKEFEVLADAGVVTLVPGKACHELQPSYVAVGAFGHHVQD
GGNSSSAEQFVIRSSKCSSMFDVFGPGDFSTAASIRGPESYTNLNWGSNV
AAGGVLGVFLMMSLEQNLNPNITEVKALLKGLTRTSPVIGDLNTSEFNGS
GPALPLLGAATSLSDLRKSFRELASSNSEGKHFLVTFLSKLPIGAIIGIC
LVVCLLLIVIIVGAVFVSRRRRESDDYEGEPTLEEDIESAAVTDNSVSET
HSDRALKRPPTIVDILSPTPLRVPPQRQDTDKGRPPQPQPVRVPVVQRLL
SLNRSKESPIPKGDKASWFATPRSEKPGNGTFNR*

mRNA from alignment at NODE_327_length_29891_cov_4.655638:22720..25074+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3275.t1 ID=Gcaud3275.t1|Name=Gcaud3275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2355bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:22720..25074+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCCACGACGCCTGTAATCAGCTCAACACCTGTGTCTTCTGCCAA
ACCGTCGTCGACTGTTTCGATGTCATCTGCCTCGGACGGCATTTTGATCC
ATCCCGATCAGTCTTCATCTCAACATGAATCTAATGCAACAAGCCCTACT
AGCTCGGGTGCAGCGTCCTTGCTACCATCCTTGTCTTTTTCTTCATCCCC
GAGTCCTTCCCGCAGTGTCGATGCTGTCGCTCCTATTGCGTCGACAGCTC
CGCAACAGACTTCTTCAAGTTCACCAAGCCATTCAGCTGAGGTTAGAGTC
TCAGCGCCACCGTCTATAACAGAACCTGCGTCCCTTCCCATTTCAGTGTC
CAGCTTACCATCGCCACCCGCTTCCACACCGAAGCCGAGAGAGAGTTCAG
CAGCACCCGAAGTCTCGCCAAATATCGAGGATGTTGAGGAGACGGAGAAT
CAATCCAATCATCTTACTATCGGTGGAACGATTACTGTTTCAGACTTTTC
GCGTGGACCCCTATTGAATAGAACTGGTGAACGTATCAAAGATACTCCAT
TTTCTGATGTTCTTATCCTCTTATCCATGAACGGCAGCAGAAGATCTACA
GTGCCAACCATCGCGCGTCAGGAATCCCTGAACGTGTCTCAGTCTGTTGT
AACTGTCAGAGCATGTCTGGAGAGGTTGGTCGGGAATGGAGAATCGACAC
CATTGTTATCTCTGCACGCATTTGAACGTCCATCGCTAAAGGAAACTGAT
ATCATAGTTTCGCGCGGCTTCAAGAGCTCTTTTCAACTCAACGAAACCTA
CACTTGCCTTATGGGACTAGCCCTCGAGATACCCGCCGATACTCTGAGCG
CAATGTTTCTTGTGCTCTCAGCACGTCTCTCTTCTGGATCTGCAGTTGTA
AAGATCTCGGCCGCTCAGTCCACGAACTTGGTAGCGGCATCTCCGTTAGT
TTGGAATCGAAACCTGTTATCAACATCAGAAAAGGCCAATGCAAGCCTTG
GTAATGCTGAGAAAGCGAAAGTCTTCATCATTTCCTCTTGGCCCAATTTG
AAACATGTTGAACTAGAAGATTCGCAAGTAGATAGCACTGGCCTTCATTA
TATCTATGGATCAATCTCTCGCTTCCCAAATCCAATCTGCGATGATTCTG
GAACACAACTCATAGCCTCTATCGTTGGAAAACAACTTGGCATTGGTCCG
AATCAGGTCACCATCATTCCCATACCGGTTCGGAATTGTGAAGAGCCATA
TTCCCTTAGCGTAATTCTCAACGCCCTTAAGCATGTGACGTCAAGCGTGG
GAAGTTCATCATCATCGAATTCTTTTCTTATATTCGATGACCAACTCCAA
GAAAGTGGTTTCTTGAACGATTCATCACTGCTAAAGGAATTTGAAGTGCT
GGCAGACGCAGGAGTGGTTACTTTGGTCCCAGGAAAAGCATGCCATGAGC
TGCAGCCATCATATGTTGCTGTTGGGGCGTTTGGTCATCATGTTCAAGAT
GGAGGGAATTCGTCCTCTGCGGAACAGTTTGTAATTCGGTCATCTAAGTG
TTCAAGTATGTTCGATGTTTTCGGACCTGGAGATTTCAGCACCGCAGCCT
CCATTAGGGGACCAGAATCATATACGAACCTCAACTGGGGTTCAAACGTT
GCAGCGGGAGGCGTTTTGGGGGTGTTTTTGATGATGTCTCTCGAGCAGAA
TCTGAACCCAAACATTACCGAGGTAAAAGCCTTGCTAAAGGGGCTGACAA
GGACGAGCCCCGTGATTGGCGATCTGAACACCAGTGAATTCAACGGATCC
GGACCTGCGCTGCCACTCCTTGGCGCCGCTACATCGCTGTCCGATCTGAG
AAAGTCCTTCCGAGAACTGGCGTCGTCGAATTCCGAGGGGAAGCACTTCC
TAGTTACTTTCCTGTCAAAACTTCCCATCGGGGCCATAATTGGGATATGT
TTAGTTGTTTGCCTTCTTTTGATCGTGATCATCGTAGGGGCGGTTTTCGT
ATCTCGGCGCAGAAGAGAATCGGACGACTACGAAGGAGAACCTACACTCG
AAGAAGATATCGAAAGCGCTGCAGTAACAGATAACTCGGTTTCTGAGACT
CACAGTGATCGTGCTCTCAAGCGACCTCCCACAATAGTAGATATTCTATC
GCCAACCCCACTTCGAGTGCCGCCCCAGAGACAAGATACGGACAAGGGCC
GCCCTCCGCAGCCGCAGCCTGTTCGTGTTCCTGTCGTACAAAGATTGTTA
TCGCTAAATAGAAGTAAGGAATCTCCCATTCCTAAGGGTGATAAGGCCTC
GTGGTTTGCCACACCCAGGAGCGAAAAACCTGGAAATGGTACATTTAACA
GATGA

Coding sequence (CDS) from alignment at NODE_327_length_29891_cov_4.655638:22720..25074+

>Gcaud3275.t1 ID=Gcaud3275.t1|Name=Gcaud3275.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2355bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:22720..25074+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCCACGACGCCTGTAATCAGCTCAACACCTGTGTCTTCTGCCAA
ACCGTCGTCGACTGTTTCGATGTCATCTGCCTCGGACGGCATTTTGATCC
ATCCCGATCAGTCTTCATCTCAACATGAATCTAATGCAACAAGCCCTACT
AGCTCGGGTGCAGCGTCCTTGCTACCATCCTTGTCTTTTTCTTCATCCCC
GAGTCCTTCCCGCAGTGTCGATGCTGTCGCTCCTATTGCGTCGACAGCTC
CGCAACAGACTTCTTCAAGTTCACCAAGCCATTCAGCTGAGGTTAGAGTC
TCAGCGCCACCGTCTATAACAGAACCTGCGTCCCTTCCCATTTCAGTGTC
CAGCTTACCATCGCCACCCGCTTCCACACCGAAGCCGAGAGAGAGTTCAG
CAGCACCCGAAGTCTCGCCAAATATCGAGGATGTTGAGGAGACGGAGAAT
CAATCCAATCATCTTACTATCGGTGGAACGATTACTGTTTCAGACTTTTC
GCGTGGACCCCTATTGAATAGAACTGGTGAACGTATCAAAGATACTCCAT
TTTCTGATGTTCTTATCCTCTTATCCATGAACGGCAGCAGAAGATCTACA
GTGCCAACCATCGCGCGTCAGGAATCCCTGAACGTGTCTCAGTCTGTTGT
AACTGTCAGAGCATGTCTGGAGAGGTTGGTCGGGAATGGAGAATCGACAC
CATTGTTATCTCTGCACGCATTTGAACGTCCATCGCTAAAGGAAACTGAT
ATCATAGTTTCGCGCGGCTTCAAGAGCTCTTTTCAACTCAACGAAACCTA
CACTTGCCTTATGGGACTAGCCCTCGAGATACCCGCCGATACTCTGAGCG
CAATGTTTCTTGTGCTCTCAGCACGTCTCTCTTCTGGATCTGCAGTTGTA
AAGATCTCGGCCGCTCAGTCCACGAACTTGGTAGCGGCATCTCCGTTAGT
TTGGAATCGAAACCTGTTATCAACATCAGAAAAGGCCAATGCAAGCCTTG
GTAATGCTGAGAAAGCGAAAGTCTTCATCATTTCCTCTTGGCCCAATTTG
AAACATGTTGAACTAGAAGATTCGCAAGTAGATAGCACTGGCCTTCATTA
TATCTATGGATCAATCTCTCGCTTCCCAAATCCAATCTGCGATGATTCTG
GAACACAACTCATAGCCTCTATCGTTGGAAAACAACTTGGCATTGGTCCG
AATCAGGTCACCATCATTCCCATACCGGTTCGGAATTGTGAAGAGCCATA
TTCCCTTAGCGTAATTCTCAACGCCCTTAAGCATGTGACGTCAAGCGTGG
GAAGTTCATCATCATCGAATTCTTTTCTTATATTCGATGACCAACTCCAA
GAAAGTGGTTTCTTGAACGATTCATCACTGCTAAAGGAATTTGAAGTGCT
GGCAGACGCAGGAGTGGTTACTTTGGTCCCAGGAAAAGCATGCCATGAGC
TGCAGCCATCATATGTTGCTGTTGGGGCGTTTGGTCATCATGTTCAAGAT
GGAGGGAATTCGTCCTCTGCGGAACAGTTTGTAATTCGGTCATCTAAGTG
TTCAAGTATGTTCGATGTTTTCGGACCTGGAGATTTCAGCACCGCAGCCT
CCATTAGGGGACCAGAATCATATACGAACCTCAACTGGGGTTCAAACGTT
GCAGCGGGAGGCGTTTTGGGGGTGTTTTTGATGATGTCTCTCGAGCAGAA
TCTGAACCCAAACATTACCGAGGTAAAAGCCTTGCTAAAGGGGCTGACAA
GGACGAGCCCCGTGATTGGCGATCTGAACACCAGTGAATTCAACGGATCC
GGACCTGCGCTGCCACTCCTTGGCGCCGCTACATCGCTGTCCGATCTGAG
AAAGTCCTTCCGAGAACTGGCGTCGTCGAATTCCGAGGGGAAGCACTTCC
TAGTTACTTTCCTGTCAAAACTTCCCATCGGGGCCATAATTGGGATATGT
TTAGTTGTTTGCCTTCTTTTGATCGTGATCATCGTAGGGGCGGTTTTCGT
ATCTCGGCGCAGAAGAGAATCGGACGACTACGAAGGAGAACCTACACTCG
AAGAAGATATCGAAAGCGCTGCAGTAACAGATAACTCGGTTTCTGAGACT
CACAGTGATCGTGCTCTCAAGCGACCTCCCACAATAGTAGATATTCTATC
GCCAACCCCACTTCGAGTGCCGCCCCAGAGACAAGATACGGACAAGGGCC
GCCCTCCGCAGCCGCAGCCTGTTCGTGTTCCTGTCGTACAAAGATTGTTA
TCGCTAAATAGAAGTAAGGAATCTCCCATTCCTAAGGGTGATAAGGCCTC
GTGGTTTGCCACACCCAGGAGCGAAAAACCTGGAAATGGTACATTTAACA
GATGA