Gcaud3261.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3261.t1
Unique Name	Gcaud3261.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_138_length_44555_cov_4.790842	contig	NODE_138_length_44555_cov_4.790842:40436..41956 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3261	Gcaud3261	Gracilaria caudata M_176_S67 male	gene	NODE_138_length_44555_cov_4.790842 40436..41956 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3261.t1.stop1	Gcaud3261.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_138_length_44555_cov_4.790842 40436..40438 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3261.t1.CDS1	Gcaud3261.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_138_length_44555_cov_4.790842 40436..41956 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3261.t1.exon1	Gcaud3261.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_138_length_44555_cov_4.790842 40436..41956 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3261.t1.start1	Gcaud3261.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_138_length_44555_cov_4.790842 41954..41956 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3261.t1	Gcaud3261.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_138_length_44555_cov_4.790842 40436..41956 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_138_length_44555_cov_4.790842:40436..41956-
coding sequence from alignment at NODE_138_length_44555_cov_4.790842:40436..41956-

mRNA sequence

>Gcaud3261.t1 ID=Gcaud3261.t1|Name=Gcaud3261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp
MSLFKHPALLGILILFNMITAHSPATVPGIIVNSFLPRGFNGTVYSLAAD
INHDVYASCFDPTDDNGSSAFILKLDAVLHTVWTKKLETFPATPATIAFS
ATMGLYAVVSMKNSETNTIEIWVFEIDADDGKTLQAVQVDSVESIVEVGL
QAFVATSERERPTLYVSYVMPRISQRDTVTKVLQLKKMDSGVLFEQWRTE
IYNASRAVVSHAIEEYIPGQGVYVAQITRKSAASITDMATITMIDKNGST
MLSGSFPTMTENAKISCFESDDNGLMFFSESPSHLHHLAMTSLNKSHRIT
KLWSESSIDIAAMHVLRNGSLLYVLADAKAIRNNTSSADSEIVPVFVVYN
NSGAILLTERHDELNSGVERILRTFAMRNEALGPAIVLGGHFSLARSDGR
LGPSQISLSTYIFPISAFETQEALDTSPVPQVPSLGEESTEGQSRYRRFA
IGISCGICAAVVVVGIMSCLRRRRATLVSKLSRNARHADQHVSNAVTGIF
RIPGSN*

spliced messenger RNA

>Gcaud3261.t1 ID=Gcaud3261.t1|Name=Gcaud3261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:40436..41956- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTGTTTAAGCATCCCGCTTTGCTTGGTATACTGATCCTGTTTAA
CATGATTACTGCCCATAGTCCTGCAACAGTCCCAGGGATCATCGTTAACT
CCTTCCTCCCTCGCGGGTTTAATGGCACAGTCTACAGCCTAGCAGCTGAT
ATTAATCACGACGTATATGCTTCTTGTTTTGACCCAACCGATGATAACGG
CAGTTCAGCTTTCATATTGAAATTGGACGCAGTACTTCATACCGTGTGGA
CAAAGAAGTTGGAAACTTTTCCAGCCACACCAGCCACAATAGCGTTTTCT
GCTACGATGGGTCTGTATGCTGTTGTCTCTATGAAGAACTCGGAGACAAA
CACTATTGAGATCTGGGTGTTTGAAATTGATGCCGATGACGGAAAAACTT
TGCAAGCTGTTCAAGTTGACAGCGTGGAGTCTATTGTCGAAGTAGGATTG
CAAGCTTTCGTTGCGACCAGTGAACGAGAACGACCTACTCTTTATGTTTC
GTACGTTATGCCACGCATTTCACAGAGAGATACCGTCACCAAGGTTCTTC
AGCTCAAAAAGATGGACTCAGGCGTTCTCTTCGAACAATGGAGAACCGAG
ATATACAATGCATCTCGTGCTGTTGTCTCTCATGCAATCGAAGAATACAT
TCCAGGTCAAGGGGTATACGTTGCTCAGATCACTCGTAAATCTGCTGCAT
CTATTACAGACATGGCAACAATAACAATGATTGACAAAAACGGATCAACG
ATGCTGTCAGGTTCCTTTCCTACCATGACCGAAAATGCCAAGATTTCTTG
TTTTGAAAGCGATGACAATGGCCTCATGTTTTTCTCAGAATCTCCTTCAC
ACCTGCATCATTTAGCTATGACTTCTTTGAACAAAAGTCACAGAATTACA
AAACTATGGTCTGAATCGTCAATTGACATCGCAGCAATGCACGTATTGCG
AAACGGGAGCTTGCTATATGTCCTGGCTGATGCAAAAGCGATTCGCAACA
ACACCAGCTCAGCAGATTCAGAAATTGTTCCTGTCTTTGTCGTATACAAC
AACAGCGGAGCCATTCTCCTCACAGAAAGGCATGATGAGCTCAACAGTGG
TGTGGAAAGGATTTTGAGAACTTTTGCGATGAGAAATGAAGCCTTAGGTC
CTGCAATCGTCTTAGGTGGACACTTCAGTCTTGCGAGAAGTGATGGGCGT
CTCGGGCCCTCTCAGATATCTCTCAGTACATATATTTTCCCGATCTCGGC
TTTTGAAACTCAAGAAGCTCTCGACACTTCCCCTGTCCCGCAAGTTCCCA
GTCTTGGAGAGGAATCCACAGAAGGCCAAAGTCGATATCGCCGGTTCGCC
ATCGGAATATCGTGCGGAATATGTGCAGCAGTCGTTGTGGTAGGGATTAT
GTCATGCTTGCGGCGAAGAAGAGCCACATTGGTCTCAAAACTGTCCCGAA
ATGCGCGCCACGCTGATCAGCACGTTAGTAATGCTGTGACAGGCATTTTC
CGCATTCCAGGCTCTAATTGA

protein sequence of Gcaud3261.t1

>Gcaud3261.t1 ID=Gcaud3261.t1|Name=Gcaud3261.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=507bp
MSLFKHPALLGILILFNMITAHSPATVPGIIVNSFLPRGFNGTVYSLAAD
INHDVYASCFDPTDDNGSSAFILKLDAVLHTVWTKKLETFPATPATIAFS
ATMGLYAVVSMKNSETNTIEIWVFEIDADDGKTLQAVQVDSVESIVEVGL
QAFVATSERERPTLYVSYVMPRISQRDTVTKVLQLKKMDSGVLFEQWRTE
IYNASRAVVSHAIEEYIPGQGVYVAQITRKSAASITDMATITMIDKNGST
MLSGSFPTMTENAKISCFESDDNGLMFFSESPSHLHHLAMTSLNKSHRIT
KLWSESSIDIAAMHVLRNGSLLYVLADAKAIRNNTSSADSEIVPVFVVYN
NSGAILLTERHDELNSGVERILRTFAMRNEALGPAIVLGGHFSLARSDGR
LGPSQISLSTYIFPISAFETQEALDTSPVPQVPSLGEESTEGQSRYRRFA
IGISCGICAAVVVVGIMSCLRRRRATLVSKLSRNARHADQHVSNAVTGIF
RIPGSN*

mRNA from alignment at NODE_138_length_44555_cov_4.790842:40436..41956-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3261.t1 ID=Gcaud3261.t1|Name=Gcaud3261.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:40436..41956- (Gracilaria caudata M_176_S67 male)
ATGAGCCTGTTTAAGCATCCCGCTTTGCTTGGTATACTGATCCTGTTTAA
CATGATTACTGCCCATAGTCCTGCAACAGTCCCAGGGATCATCGTTAACT
CCTTCCTCCCTCGCGGGTTTAATGGCACAGTCTACAGCCTAGCAGCTGAT
ATTAATCACGACGTATATGCTTCTTGTTTTGACCCAACCGATGATAACGG
CAGTTCAGCTTTCATATTGAAATTGGACGCAGTACTTCATACCGTGTGGA
CAAAGAAGTTGGAAACTTTTCCAGCCACACCAGCCACAATAGCGTTTTCT
GCTACGATGGGTCTGTATGCTGTTGTCTCTATGAAGAACTCGGAGACAAA
CACTATTGAGATCTGGGTGTTTGAAATTGATGCCGATGACGGAAAAACTT
TGCAAGCTGTTCAAGTTGACAGCGTGGAGTCTATTGTCGAAGTAGGATTG
CAAGCTTTCGTTGCGACCAGTGAACGAGAACGACCTACTCTTTATGTTTC
GTACGTTATGCCACGCATTTCACAGAGAGATACCGTCACCAAGGTTCTTC
AGCTCAAAAAGATGGACTCAGGCGTTCTCTTCGAACAATGGAGAACCGAG
ATATACAATGCATCTCGTGCTGTTGTCTCTCATGCAATCGAAGAATACAT
TCCAGGTCAAGGGGTATACGTTGCTCAGATCACTCGTAAATCTGCTGCAT
CTATTACAGACATGGCAACAATAACAATGATTGACAAAAACGGATCAACG
ATGCTGTCAGGTTCCTTTCCTACCATGACCGAAAATGCCAAGATTTCTTG
TTTTGAAAGCGATGACAATGGCCTCATGTTTTTCTCAGAATCTCCTTCAC
ACCTGCATCATTTAGCTATGACTTCTTTGAACAAAAGTCACAGAATTACA
AAACTATGGTCTGAATCGTCAATTGACATCGCAGCAATGCACGTATTGCG
AAACGGGAGCTTGCTATATGTCCTGGCTGATGCAAAAGCGATTCGCAACA
ACACCAGCTCAGCAGATTCAGAAATTGTTCCTGTCTTTGTCGTATACAAC
AACAGCGGAGCCATTCTCCTCACAGAAAGGCATGATGAGCTCAACAGTGG
TGTGGAAAGGATTTTGAGAACTTTTGCGATGAGAAATGAAGCCTTAGGTC
CTGCAATCGTCTTAGGTGGACACTTCAGTCTTGCGAGAAGTGATGGGCGT
CTCGGGCCCTCTCAGATATCTCTCAGTACATATATTTTCCCGATCTCGGC
TTTTGAAACTCAAGAAGCTCTCGACACTTCCCCTGTCCCGCAAGTTCCCA
GTCTTGGAGAGGAATCCACAGAAGGCCAAAGTCGATATCGCCGGTTCGCC
ATCGGAATATCGTGCGGAATATGTGCAGCAGTCGTTGTGGTAGGGATTAT
GTCATGCTTGCGGCGAAGAAGAGCCACATTGGTCTCAAAACTGTCCCGAA
ATGCGCGCCACGCTGATCAGCACGTTAGTAATGCTGTGACAGGCATTTTC
CGCATTCCAGGCTCTAATTGA

Coding sequence (CDS) from alignment at NODE_138_length_44555_cov_4.790842:40436..41956-

>Gcaud3261.t1 ID=Gcaud3261.t1|Name=Gcaud3261.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1521bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:40436..41956- (Gracilaria caudata M_176_S67 male)
ATGAGCCTGTTTAAGCATCCCGCTTTGCTTGGTATACTGATCCTGTTTAA
CATGATTACTGCCCATAGTCCTGCAACAGTCCCAGGGATCATCGTTAACT
CCTTCCTCCCTCGCGGGTTTAATGGCACAGTCTACAGCCTAGCAGCTGAT
ATTAATCACGACGTATATGCTTCTTGTTTTGACCCAACCGATGATAACGG
CAGTTCAGCTTTCATATTGAAATTGGACGCAGTACTTCATACCGTGTGGA
CAAAGAAGTTGGAAACTTTTCCAGCCACACCAGCCACAATAGCGTTTTCT
GCTACGATGGGTCTGTATGCTGTTGTCTCTATGAAGAACTCGGAGACAAA
CACTATTGAGATCTGGGTGTTTGAAATTGATGCCGATGACGGAAAAACTT
TGCAAGCTGTTCAAGTTGACAGCGTGGAGTCTATTGTCGAAGTAGGATTG
CAAGCTTTCGTTGCGACCAGTGAACGAGAACGACCTACTCTTTATGTTTC
GTACGTTATGCCACGCATTTCACAGAGAGATACCGTCACCAAGGTTCTTC
AGCTCAAAAAGATGGACTCAGGCGTTCTCTTCGAACAATGGAGAACCGAG
ATATACAATGCATCTCGTGCTGTTGTCTCTCATGCAATCGAAGAATACAT
TCCAGGTCAAGGGGTATACGTTGCTCAGATCACTCGTAAATCTGCTGCAT
CTATTACAGACATGGCAACAATAACAATGATTGACAAAAACGGATCAACG
ATGCTGTCAGGTTCCTTTCCTACCATGACCGAAAATGCCAAGATTTCTTG
TTTTGAAAGCGATGACAATGGCCTCATGTTTTTCTCAGAATCTCCTTCAC
ACCTGCATCATTTAGCTATGACTTCTTTGAACAAAAGTCACAGAATTACA
AAACTATGGTCTGAATCGTCAATTGACATCGCAGCAATGCACGTATTGCG
AAACGGGAGCTTGCTATATGTCCTGGCTGATGCAAAAGCGATTCGCAACA
ACACCAGCTCAGCAGATTCAGAAATTGTTCCTGTCTTTGTCGTATACAAC
AACAGCGGAGCCATTCTCCTCACAGAAAGGCATGATGAGCTCAACAGTGG
TGTGGAAAGGATTTTGAGAACTTTTGCGATGAGAAATGAAGCCTTAGGTC
CTGCAATCGTCTTAGGTGGACACTTCAGTCTTGCGAGAAGTGATGGGCGT
CTCGGGCCCTCTCAGATATCTCTCAGTACATATATTTTCCCGATCTCGGC
TTTTGAAACTCAAGAAGCTCTCGACACTTCCCCTGTCCCGCAAGTTCCCA
GTCTTGGAGAGGAATCCACAGAAGGCCAAAGTCGATATCGCCGGTTCGCC
ATCGGAATATCGTGCGGAATATGTGCAGCAGTCGTTGTGGTAGGGATTAT
GTCATGCTTGCGGCGAAGAAGAGCCACATTGGTCTCAAAACTGTCCCGAA
ATGCGCGCCACGCTGATCAGCACGTTAGTAATGCTGTGACAGGCATTTTC
CGCATTCCAGGCTCTAATTGA