Gcaud3250.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3250.t1
Unique NameGcaud3250.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_138_length_44555_cov_4.790842contigNODE_138_length_44555_cov_4.790842:233..805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010431016.1
PFAMsPlant_tran
Max annot lvl35493|Streptophyta
Evalue8.36e-32
EggNOG OGs28IUF@1|root,2QR5Z@2759|Eukaryota,37STI@33090|Viridiplantae,3GB85@35493|Streptophyta
DescriptionRibosomal protein-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3250Gcaud3250Gracilaria caudata M_176_S67 malegeneNODE_138_length_44555_cov_4.790842 233..805 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3250.t1.stop1Gcaud3250.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_138_length_44555_cov_4.790842 233..235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3250.t1.CDS1Gcaud3250.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_138_length_44555_cov_4.790842 233..805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3250.t1.exon1Gcaud3250.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_138_length_44555_cov_4.790842 233..805 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3250.t1.start1Gcaud3250.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_138_length_44555_cov_4.790842 803..805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3250.t1Gcaud3250.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_138_length_44555_cov_4.790842 233..805 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3250.t1 ID=Gcaud3250.t1|Name=Gcaud3250.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=191bp
MAEGSYPPSVEYAIAGQTRNIPYWLADGIYPKYPYFVQTVSHPLTKKEKV
MAAHQEARRKDVERAFGVLQARWHIIARPSRFWNKTTMRIVMQCCILLHN
MMIESNRNEEEPEDVHELVANASFGNDATVMWELAASQEEVIPPPGTIAA
ICALQRLSNDEREYLKTRRLVMQNLWDTFGNTFFWEDNCS*
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spliced messenger RNA

>Gcaud3250.t1 ID=Gcaud3250.t1|Name=Gcaud3250.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=573bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:233..805- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAGGCTCGTATCCGCCATCGGTAGAGTACGCTATAGCTGGGCA
GACACGGAACATTCCATATTGGCTTGCAGACGGTATCTACCCAAAGTATC
CGTATTTTGTACAAACCGTAAGCCACCCATTAACCAAGAAAGAGAAGGTC
ATGGCCGCCCACCAAGAGGCCAGACGCAAGGATGTCGAGCGCGCGTTTGG
AGTGCTGCAGGCCAGATGGCATATCATCGCTCGACCAAGCAGATTCTGGA
ACAAAACGACAATGAGAATTGTCATGCAGTGCTGCATTCTACTCCACAAT
ATGATGATAGAAAGCAATCGCAACGAAGAAGAGCCGGAGGATGTTCATGA
ACTTGTTGCAAATGCGTCGTTTGGGAACGATGCTACAGTGATGTGGGAGT
TGGCTGCTTCACAGGAAGAAGTAATTCCCCCACCTGGTACTATTGCCGCA
ATATGTGCCTTGCAGAGACTAAGTAATGACGAACGCGAATACTTAAAAAC
CCGTAGACTAGTCATGCAGAATTTATGGGACACGTTTGGGAATACGTTCT
TTTGGGAAGACAATTGCTCGTAG
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protein sequence of Gcaud3250.t1

>Gcaud3250.t1 ID=Gcaud3250.t1|Name=Gcaud3250.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=191bp
MAEGSYPPSVEYAIAGQTRNIPYWLADGIYPKYPYFVQTVSHPLTKKEKV
MAAHQEARRKDVERAFGVLQARWHIIARPSRFWNKTTMRIVMQCCILLHN
MMIESNRNEEEPEDVHELVANASFGNDATVMWELAASQEEVIPPPGTIAA
ICALQRLSNDEREYLKTRRLVMQNLWDTFGNTFFWEDNCS*
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mRNA from alignment at NODE_138_length_44555_cov_4.790842:233..805-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3250.t1 ID=Gcaud3250.t1|Name=Gcaud3250.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=573bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:233..805- (Gracilaria caudata M_176_S67 male)
ATGGCGGAAGGCTCGTATCCGCCATCGGTAGAGTACGCTATAGCTGGGCA
GACACGGAACATTCCATATTGGCTTGCAGACGGTATCTACCCAAAGTATC
CGTATTTTGTACAAACCGTAAGCCACCCATTAACCAAGAAAGAGAAGGTC
ATGGCCGCCCACCAAGAGGCCAGACGCAAGGATGTCGAGCGCGCGTTTGG
AGTGCTGCAGGCCAGATGGCATATCATCGCTCGACCAAGCAGATTCTGGA
ACAAAACGACAATGAGAATTGTCATGCAGTGCTGCATTCTACTCCACAAT
ATGATGATAGAAAGCAATCGCAACGAAGAAGAGCCGGAGGATGTTCATGA
ACTTGTTGCAAATGCGTCGTTTGGGAACGATGCTACAGTGATGTGGGAGT
TGGCTGCTTCACAGGAAGAAGTAATTCCCCCACCTGGTACTATTGCCGCA
ATATGTGCCTTGCAGAGACTAAGTAATGACGAACGCGAATACTTAAAAAC
CCGTAGACTAGTCATGCAGAATTTATGGGACACGTTTGGGAATACGTTCT
TTTGGGAAGACAATTGCTCGTAG
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Coding sequence (CDS) from alignment at NODE_138_length_44555_cov_4.790842:233..805-

>Gcaud3250.t1 ID=Gcaud3250.t1|Name=Gcaud3250.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=573bp|location=Sequence derived from alignment at NODE_138_length_44555_cov_4.790842:233..805- (Gracilaria caudata M_176_S67 male)
ATGGCGGAAGGCTCGTATCCGCCATCGGTAGAGTACGCTATAGCTGGGCA
GACACGGAACATTCCATATTGGCTTGCAGACGGTATCTACCCAAAGTATC
CGTATTTTGTACAAACCGTAAGCCACCCATTAACCAAGAAAGAGAAGGTC
ATGGCCGCCCACCAAGAGGCCAGACGCAAGGATGTCGAGCGCGCGTTTGG
AGTGCTGCAGGCCAGATGGCATATCATCGCTCGACCAAGCAGATTCTGGA
ACAAAACGACAATGAGAATTGTCATGCAGTGCTGCATTCTACTCCACAAT
ATGATGATAGAAAGCAATCGCAACGAAGAAGAGCCGGAGGATGTTCATGA
ACTTGTTGCAAATGCGTCGTTTGGGAACGATGCTACAGTGATGTGGGAGT
TGGCTGCTTCACAGGAAGAAGTAATTCCCCCACCTGGTACTATTGCCGCA
ATATGTGCCTTGCAGAGACTAAGTAATGACGAACGCGAATACTTAAAAAC
CCGTAGACTAGTCATGCAGAATTTATGGGACACGTTTGGGAATACGTTCT
TTTGGGAAGACAATTGCTCGTAG
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