Gcaud3176.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3176.t1
Unique Name	Gcaud3176.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	602

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_115_length_48887_cov_4.567628	contig	NODE_115_length_48887_cov_4.567628:43693..45572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703337.1
PFAMs	Helicase_C,SNF2_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11647,ko:K11786
KEGG Pathway	ko04714,ko05225,map04714,map05225
Evalue	3.69e-106
EggNOG OGs	COG0553@1\|root,KOG0386@2759\|Eukaryota
Description	aortic smooth muscle cell differentiation
COG category	KL
BRITE	ko00000,ko00001,ko01000,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3176	Gcaud3176	Gracilaria caudata M_176_S67 male	gene	NODE_115_length_48887_cov_4.567628 43693..45572 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3176.t1	Gcaud3176.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_115_length_48887_cov_4.567628 43693..45572 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3176.t1.start1	Gcaud3176.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_115_length_48887_cov_4.567628 43693..43695 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3176.t1.CDS1	Gcaud3176.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_115_length_48887_cov_4.567628 43693..45484 +
Gcaud3176.t1.CDS2	Gcaud3176.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_115_length_48887_cov_4.567628 45559..45572 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3176.t1.exon1	Gcaud3176.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_115_length_48887_cov_4.567628 43693..45484 +
Gcaud3176.t1.exon2	Gcaud3176.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_115_length_48887_cov_4.567628 45559..45572 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3176.t1.intron1	Gcaud3176.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_115_length_48887_cov_4.567628 45485..45558 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3176.t1.stop1	Gcaud3176.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_115_length_48887_cov_4.567628 45570..45572 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_115_length_48887_cov_4.567628:43693..45572+
coding sequence from alignment at NODE_115_length_48887_cov_4.567628:43693..45572+

mRNA sequence

>Gcaud3176.t1 ID=Gcaud3176.t1|Name=Gcaud3176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=602bp
MASQQAVRLLEAHPHRAPLEAEQLRALCNLLYTLKRGLGSAAAAKTPVYN
AILRVLKAHTCPLPNTTVTFAQVQAARLQLLAEKLYREHKPFPQELNAAI
TQGLVSGFDPATGFRVPPETQNVQLARQQLQEQDEIMKERQRLQELQADF
HKSRASCVEAARAHEPELPTPEEMLPWEQRRIPIPRQGLQRGRHMGLDQN
TLVNERYRSLKVRTDAICSDIARILTDHGTGVKTLSPRNAALLETRIRHV
KLMSLQSRIRQSVWNEYQTGTLDGRRTSRAKVRTLKQLQREYERVERARH
RQVETEEKDARRKRQAWINAMADHLNKFRSYHRDTVKRGVRAVNKALLKY
HEELSKNASRAEREAEKARIQKLKDDDEEGYLELVKQTKNTRVLELLEQT
DKYLRELGAVVKEERARSGVVEYENNTAAKIGRRSNYYEIAHAIKEEVRT
QSSLLVGGTLKEYQLHGIQWMVSLYNNRLNGILADEMGLGKTVQTLGLIA
HLMERKDNPGPYLIIVPLSTVSNWEMEFARWAPVIRVVVFKGDARARKRL
YEEVIEKKSFNVCLVTYEYVVRGKNFLKRVEWQHIIIDEGHRIKNHEKLA
N*

spliced messenger RNA

>Gcaud3176.t1 ID=Gcaud3176.t1|Name=Gcaud3176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1806bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:43693..45572+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCACAACAGGCAGTTCGTCTACTTGAGGCACACCCCCACCGTGC
TCCGCTCGAAGCTGAGCAGCTACGAGCCCTCTGTAACCTTCTTTACACCT
TGAAGCGCGGACTGGGCTCTGCCGCCGCCGCCAAAACCCCCGTGTACAAT
GCCATCCTTCGCGTCCTCAAGGCACATACATGCCCCCTCCCTAATACCAC
CGTCACCTTTGCCCAGGTCCAAGCAGCCCGTCTCCAGCTTCTCGCCGAAA
AGCTCTATCGGGAGCACAAGCCTTTCCCACAGGAGCTCAATGCAGCAATC
ACCCAGGGGCTGGTTTCTGGCTTCGACCCCGCCACGGGCTTTCGCGTTCC
GCCAGAAACTCAGAATGTGCAGTTAGCTAGACAACAGCTCCAGGAGCAGG
ACGAAATCATGAAGGAGAGACAACGTCTCCAGGAGCTTCAAGCAGATTTT
CACAAGTCCCGAGCAAGTTGTGTAGAAGCCGCAAGGGCCCACGAACCAGA
ACTACCTACCCCTGAGGAGATGCTCCCATGGGAACAACGTCGAATCCCCA
TTCCTCGTCAAGGACTTCAACGGGGAAGGCACATGGGACTGGACCAGAAC
ACCCTTGTGAACGAGCGCTATAGGTCGCTCAAAGTCCGAACTGACGCCAT
CTGTTCCGACATAGCTCGCATTCTAACAGACCACGGCACCGGCGTCAAAA
CTCTTAGTCCACGTAACGCAGCTTTGCTTGAGACTCGAATCCGTCATGTC
AAGCTCATGTCCTTGCAAAGTCGTATTCGACAGTCGGTGTGGAATGAGTA
CCAAACAGGCACCCTTGATGGTCGCCGCACATCCAGGGCCAAAGTTCGGA
CCCTTAAACAGTTGCAACGTGAGTATGAGAGAGTGGAGCGCGCAAGACAT
CGTCAAGTCGAAACGGAGGAAAAGGATGCTCGCCGTAAGAGACAAGCCTG
GATCAACGCTATGGCGGACCATCTCAATAAGTTCAGGAGCTATCACAGGG
ACACAGTGAAACGGGGTGTGCGTGCAGTGAACAAGGCGCTTCTGAAGTAT
CATGAAGAGCTATCGAAAAATGCAAGTCGTGCAGAAAGGGAAGCAGAGAA
GGCCCGTATTCAGAAACTTAAGGACGATGATGAAGAGGGCTATCTTGAAC
TTGTCAAACAAACTAAAAATACGCGCGTGCTGGAACTTCTCGAACAAACT
GATAAGTACCTGCGAGAGCTTGGTGCGGTCGTCAAAGAAGAGAGAGCCCG
AAGCGGTGTTGTAGAGTACGAGAACAATACGGCTGCGAAAATTGGGCGCC
GTAGCAACTACTACGAGATTGCACACGCGATCAAGGAAGAGGTGCGAACA
CAGTCTTCATTGTTAGTCGGTGGAACTCTCAAGGAGTATCAATTGCATGG
TATCCAATGGATGGTTAGCTTgtacaataaccgtctcaatggcatccttg
cggacgagatgggtctggggaaaactgttcaaacaTTGGGTCTAATTGCT
CACCTTATGGAACGCAAAGACAATCCTGGCCCGTATTTGATAATTGTTCC
TCTATCTACAGTCAGCAACTGGGAGATGGAGTTCGCAAGGTGGGCACCAG
TTATCAGGGTTGTAGTTTTCAAAGGGGATGCCCGGGCTCGCAAACGTTTG
TACGAAGAAGTAATCGAGAAGAAGAGCTTCAATGTCTGTCTGGTCACGTA
CGAGTATGTTGTTCGAGGGAAAAATTTCTTGAAGCGCGTCGAATGGCAGC
ATATTATTATTGATGAAGGGCATAGAATCAAGAACCACGAGAaactcgct
aactga

protein sequence of Gcaud3176.t1

>Gcaud3176.t1 ID=Gcaud3176.t1|Name=Gcaud3176.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=602bp
MASQQAVRLLEAHPHRAPLEAEQLRALCNLLYTLKRGLGSAAAAKTPVYN
AILRVLKAHTCPLPNTTVTFAQVQAARLQLLAEKLYREHKPFPQELNAAI
TQGLVSGFDPATGFRVPPETQNVQLARQQLQEQDEIMKERQRLQELQADF
HKSRASCVEAARAHEPELPTPEEMLPWEQRRIPIPRQGLQRGRHMGLDQN
TLVNERYRSLKVRTDAICSDIARILTDHGTGVKTLSPRNAALLETRIRHV
KLMSLQSRIRQSVWNEYQTGTLDGRRTSRAKVRTLKQLQREYERVERARH
RQVETEEKDARRKRQAWINAMADHLNKFRSYHRDTVKRGVRAVNKALLKY
HEELSKNASRAEREAEKARIQKLKDDDEEGYLELVKQTKNTRVLELLEQT
DKYLRELGAVVKEERARSGVVEYENNTAAKIGRRSNYYEIAHAIKEEVRT
QSSLLVGGTLKEYQLHGIQWMVSLYNNRLNGILADEMGLGKTVQTLGLIA
HLMERKDNPGPYLIIVPLSTVSNWEMEFARWAPVIRVVVFKGDARARKRL
YEEVIEKKSFNVCLVTYEYVVRGKNFLKRVEWQHIIIDEGHRIKNHEKLA
N*

mRNA from alignment at NODE_115_length_48887_cov_4.567628:43693..45572+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3176.t1 ID=Gcaud3176.t1|Name=Gcaud3176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1880bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:43693..45572+ (Gracilaria caudata M_176_S67 male)
ATGGCGTCACAACAGGCAGTTCGTCTACTTGAGGCACACCCCCACCGTGC
TCCGCTCGAAGCTGAGCAGCTACGAGCCCTCTGTAACCTTCTTTACACCT
TGAAGCGCGGACTGGGCTCTGCCGCCGCCGCCAAAACCCCCGTGTACAAT
GCCATCCTTCGCGTCCTCAAGGCACATACATGCCCCCTCCCTAATACCAC
CGTCACCTTTGCCCAGGTCCAAGCAGCCCGTCTCCAGCTTCTCGCCGAAA
AGCTCTATCGGGAGCACAAGCCTTTCCCACAGGAGCTCAATGCAGCAATC
ACCCAGGGGCTGGTTTCTGGCTTCGACCCCGCCACGGGCTTTCGCGTTCC
GCCAGAAACTCAGAATGTGCAGTTAGCTAGACAACAGCTCCAGGAGCAGG
ACGAAATCATGAAGGAGAGACAACGTCTCCAGGAGCTTCAAGCAGATTTT
CACAAGTCCCGAGCAAGTTGTGTAGAAGCCGCAAGGGCCCACGAACCAGA
ACTACCTACCCCTGAGGAGATGCTCCCATGGGAACAACGTCGAATCCCCA
TTCCTCGTCAAGGACTTCAACGGGGAAGGCACATGGGACTGGACCAGAAC
ACCCTTGTGAACGAGCGCTATAGGTCGCTCAAAGTCCGAACTGACGCCAT
CTGTTCCGACATAGCTCGCATTCTAACAGACCACGGCACCGGCGTCAAAA
CTCTTAGTCCACGTAACGCAGCTTTGCTTGAGACTCGAATCCGTCATGTC
AAGCTCATGTCCTTGCAAAGTCGTATTCGACAGTCGGTGTGGAATGAGTA
CCAAACAGGCACCCTTGATGGTCGCCGCACATCCAGGGCCAAAGTTCGGA
CCCTTAAACAGTTGCAACGTGAGTATGAGAGAGTGGAGCGCGCAAGACAT
CGTCAAGTCGAAACGGAGGAAAAGGATGCTCGCCGTAAGAGACAAGCCTG
GATCAACGCTATGGCGGACCATCTCAATAAGTTCAGGAGCTATCACAGGG
ACACAGTGAAACGGGGTGTGCGTGCAGTGAACAAGGCGCTTCTGAAGTAT
CATGAAGAGCTATCGAAAAATGCAAGTCGTGCAGAAAGGGAAGCAGAGAA
GGCCCGTATTCAGAAACTTAAGGACGATGATGAAGAGGGCTATCTTGAAC
TTGTCAAACAAACTAAAAATACGCGCGTGCTGGAACTTCTCGAACAAACT
GATAAGTACCTGCGAGAGCTTGGTGCGGTCGTCAAAGAAGAGAGAGCCCG
AAGCGGTGTTGTAGAGTACGAGAACAATACGGCTGCGAAAATTGGGCGCC
GTAGCAACTACTACGAGATTGCACACGCGATCAAGGAAGAGGTGCGAACA
CAGTCTTCATTGTTAGTCGGTGGAACTCTCAAGGAGTATCAATTGCATGG
TATCCAATGGATGGTTAGCTTgtacaataaccgtctcaatggcatccttg
cggacgagatgggtctggggaaaactgttcaaacaTTGGGTCTAATTGCT
CACCTTATGGAACGCAAAGACAATCCTGGCCCGTATTTGATAATTGTTCC
TCTATCTACAGTCAGCAACTGGGAGATGGAGTTCGCAAGGTGGGCACCAG
TTATCAGGGTTGTAGTTTTCAAAGGGGATGCCCGGGCTCGCAAACGTTTG
TACGAAGAAGTAATCGAGAAGAAGAGCTTCAATGTCTGTCTGGTCACGTA
CGAGTATGTTGTTCGAGGGAAAAATTTCTTGAAGCGCGTCGAATGGCAGC
ATATTATTATTGATGAAGGGCATAGAATCAAGAACCACGAGAGTAAGCTT
AGCTCGGTGCTTCATGCGCATTACCGAAGCCGCAATCGCTTGCTActcac
cggaacgccgttacagaactcgctaactga

Coding sequence (CDS) from alignment at NODE_115_length_48887_cov_4.567628:43693..45572+

>Gcaud3176.t1 ID=Gcaud3176.t1|Name=Gcaud3176.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1806bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:43693..45572+ (Gracilaria caudata M_176_S67 male)
ATGGCGTCACAACAGGCAGTTCGTCTACTTGAGGCACACCCCCACCGTGC
TCCGCTCGAAGCTGAGCAGCTACGAGCCCTCTGTAACCTTCTTTACACCT
TGAAGCGCGGACTGGGCTCTGCCGCCGCCGCCAAAACCCCCGTGTACAAT
GCCATCCTTCGCGTCCTCAAGGCACATACATGCCCCCTCCCTAATACCAC
CGTCACCTTTGCCCAGGTCCAAGCAGCCCGTCTCCAGCTTCTCGCCGAAA
AGCTCTATCGGGAGCACAAGCCTTTCCCACAGGAGCTCAATGCAGCAATC
ACCCAGGGGCTGGTTTCTGGCTTCGACCCCGCCACGGGCTTTCGCGTTCC
GCCAGAAACTCAGAATGTGCAGTTAGCTAGACAACAGCTCCAGGAGCAGG
ACGAAATCATGAAGGAGAGACAACGTCTCCAGGAGCTTCAAGCAGATTTT
CACAAGTCCCGAGCAAGTTGTGTAGAAGCCGCAAGGGCCCACGAACCAGA
ACTACCTACCCCTGAGGAGATGCTCCCATGGGAACAACGTCGAATCCCCA
TTCCTCGTCAAGGACTTCAACGGGGAAGGCACATGGGACTGGACCAGAAC
ACCCTTGTGAACGAGCGCTATAGGTCGCTCAAAGTCCGAACTGACGCCAT
CTGTTCCGACATAGCTCGCATTCTAACAGACCACGGCACCGGCGTCAAAA
CTCTTAGTCCACGTAACGCAGCTTTGCTTGAGACTCGAATCCGTCATGTC
AAGCTCATGTCCTTGCAAAGTCGTATTCGACAGTCGGTGTGGAATGAGTA
CCAAACAGGCACCCTTGATGGTCGCCGCACATCCAGGGCCAAAGTTCGGA
CCCTTAAACAGTTGCAACGTGAGTATGAGAGAGTGGAGCGCGCAAGACAT
CGTCAAGTCGAAACGGAGGAAAAGGATGCTCGCCGTAAGAGACAAGCCTG
GATCAACGCTATGGCGGACCATCTCAATAAGTTCAGGAGCTATCACAGGG
ACACAGTGAAACGGGGTGTGCGTGCAGTGAACAAGGCGCTTCTGAAGTAT
CATGAAGAGCTATCGAAAAATGCAAGTCGTGCAGAAAGGGAAGCAGAGAA
GGCCCGTATTCAGAAACTTAAGGACGATGATGAAGAGGGCTATCTTGAAC
TTGTCAAACAAACTAAAAATACGCGCGTGCTGGAACTTCTCGAACAAACT
GATAAGTACCTGCGAGAGCTTGGTGCGGTCGTCAAAGAAGAGAGAGCCCG
AAGCGGTGTTGTAGAGTACGAGAACAATACGGCTGCGAAAATTGGGCGCC
GTAGCAACTACTACGAGATTGCACACGCGATCAAGGAAGAGGTGCGAACA
CAGTCTTCATTGTTAGTCGGTGGAACTCTCAAGGAGTATCAATTGCATGG
TATCCAATGGATGGTTAGCTTgtacaataaccgtctcaatggcatccttg
cggacgagatgggtctggggaaaactgttcaaacaTTGGGTCTAATTGCT
CACCTTATGGAACGCAAAGACAATCCTGGCCCGTATTTGATAATTGTTCC
TCTATCTACAGTCAGCAACTGGGAGATGGAGTTCGCAAGGTGGGCACCAG
TTATCAGGGTTGTAGTTTTCAAAGGGGATGCCCGGGCTCGCAAACGTTTG
TACGAAGAAGTAATCGAGAAGAAGAGCTTCAATGTCTGTCTGGTCACGTA
CGAGTATGTTGTTCGAGGGAAAAATTTCTTGAAGCGCGTCGAATGGCAGC
ATATTATTATTGATGAAGGGCATAGAATCAAGAACCACGAGAaactcgct
aactga