Gcaud3165.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3165.t1
Unique Name	Gcaud3165.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	566

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_115_length_48887_cov_4.567628	contig	NODE_115_length_48887_cov_4.567628:13245..14942 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	266117.Rxyl_2376
PFAMs	Trehalase
Max annot lvl	84995\|Rubrobacteria
Evalue	4.31e-123
EggNOG OGs	COG1626@1\|root,COG1626@2\|Bacteria,2I1MU@201174\|Actinobacteria,4CQPE@84995\|Rubrobacteria
Description	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3165	Gcaud3165	Gracilaria caudata M_176_S67 male	gene	NODE_115_length_48887_cov_4.567628 13245..14942 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3165.t1.start1	Gcaud3165.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_115_length_48887_cov_4.567628 13245..13247 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3165.t1.CDS1	Gcaud3165.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_115_length_48887_cov_4.567628 13245..14942 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3165.t1.exon1	Gcaud3165.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_115_length_48887_cov_4.567628 13245..14942 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3165.t1.stop1	Gcaud3165.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_115_length_48887_cov_4.567628 14940..14942 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3165.t1	Gcaud3165.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_115_length_48887_cov_4.567628 13245..14942 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_115_length_48887_cov_4.567628:13245..14942+
coding sequence from alignment at NODE_115_length_48887_cov_4.567628:13245..14942+

mRNA sequence

>Gcaud3165.t1 ID=Gcaud3165.t1|Name=Gcaud3165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=566bp
MAFLTTTALLTAAFIATAIASLCPAVTDPTQHQFITDAKAVLDGNWVPTM
NSTLPSPNLYPHQWSWDSSFISIGYSHYDTQKAIDETDALFRAQWRNGLL
PHIVFNPNADESYFPGPSFWKIETSNSYPLNSHTSGIVQPPVHAIASLAI
FNNARSAEQKKLALEHLSTIYPKLVNWHNYLYGERDPLNENLVYIRHMWE
SGMDNSPAWDDALNSIQLTADQIPQYTRVDKGKVGDHHERPSAHFYDRAV
HLIKIFYDNQYDESAIFAKSPFIIQDVLFNSILAHAGDALADIAHILGKN
EEEERHRIQAARTAEAISSKLYHEEDGFFYDYDMKSEKLIRTKISGGLVG
VYGAKMDSAKLKSILGHLREPGFLGPDLSGFTIPSVSRDDPGYTNTTYWK
GPAWININYLVRDGLLRNANGNQDAEEIASYLKERSMDMLKTSGFYEYFN
PISGSPHGGHQFSWSAALTIDWMCNASTSSDEVRARNVALVAAVVSLLAA
VAAYVVKSKRGKKTGSGVYPRMKDASDATSKARAHEEFKWTDSMTLLHLR
RRTHTPALIRAGRSN*

spliced messenger RNA

>Gcaud3165.t1 ID=Gcaud3165.t1|Name=Gcaud3165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:13245..14942+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCCTAACCACAACCGCCTTGCTTACAGCTGCCTTCATCGCCAC
AGCGATTGCATCTCTGTGCCCCGCCGTAACCGATCCTACTCAGCATCAGT
TCATAACTGATGCCAAGGCCGTTCTCGATGGAAACTGGGTGCCGACCATG
AACTCCACGCTCCCATCGCCTAATCTGTATCCGCATCAGTGGTCATGGGA
CTCCTCCTTCATTTCTATCGGTTACAGTCACTATGACACCCAAAAGGCCA
TCGATGAGACCGACGCTCTCTTCAGAGCACAGTGGAGGAACGGCCTCCTG
CCTCACATCGTCTTCAACCCCAACGCTGACGAGTCTTATTTTCCGGGGCC
GTCATTCTGGAAGATCGAAACGTCTAACAGTTATCCTCTCAACTCTCATA
CCTCTGGTATTGTGCAGCCCCCCGTGCACGCTATTGCGTCCCTGGCCATC
TTCAACAATGCCAGATCCGCTGAACAGAAGAAGCTCGCACTAGAGCATCT
TTCTACCATTTACCCCAAACTCGTCAATTGGCATAACTATTTGTATGGTG
AGAGGGATCCTCTCAACGAGAACCTAGTGTACATCCGTCACATGTGGGAG
AGTGGCATGGATAACTCTCCAGCATGGGACGATGCTCTTAACTCCATTCA
GCTAACTGCTGACCAAATCCCGCAGTACACCCGTGTGGACAAGGGTAAGG
TGGGTGATCATCATGAGCGTCCCAGCGCTCATTTCTACGATCGCGCAGTG
CATCTCATTAAGATCTTCTATGACAATCAGTACGATGAGTCTGCCATTTT
TGCAAAATCGCCGTTCATCATTCAAGATGTTTTGTTCAACTCCATCCTGG
CTCATGCTGGTGATGCCCTCGCTGATATTGCACACATTCTTGGAAAGAAT
GAAGAAGAGGAACGTCACCGCATTCAAGCCGCCAGGACAGCTGAAGCCAT
CAGCTCCAAGTTATACCACGAAGAAGATGGCTTCTTCTATGACTATGACA
TGAAGTCTGAGAAGCTCATCCGCACCAAGATATCCGGTGGTCTGGTTGGT
GTGTATGGCGCAAAGATGGATTCAGCTAAGCTCAAATCGATTCTCGGCCA
CCTTCGCGAGCCAGGATTCCTGGGCCCCGACCTTTCAGGATTCACTATCC
CTTCCGTGTCACGTGACGATCCAGGTTACACCAATACTACGTATTGGAAG
GGGCCGGCATGGATCAACATCAACTACTTGGTCAGGGACGGTCTTCTGCG
CAATGCCAACGGCAACCAGGATGCTGAGGAGATCGCTTCCTATCTTAAGG
AACGCAGCATGGACATGCTGAAGACGTCTGGCTTCTACGAGTACTTCAAC
CCCATCTCCGGTTCACCGCATGGCGGGCATCAATTCAGTTGGTCGGCAGC
GTTGACTATCGACTGGATGTGCAACGCGTCGACGTCGTCGGATGAGGTAC
GAGCGCGCAACGTTGCACTTGTGGCAGCTGTGGTGAGTTTGCTTGCGGCT
GTTGCCGCGTACGTGGTGAAGAGCAAGCGAGGCAAGAAGACTGGAAGCGG
CGTGTATCCACGTATGAAGGACGCAAGTGACGCGACCAGCAAGGCACGGG
CACATGAAGAATTCAAGTGGACAGACTCGATGACGCTGCTGCACCTACGC
CGCAGAACGCACACGCCGGCCTTGATTCGCGCTGGCAGGTCCAACTAG

protein sequence of Gcaud3165.t1

>Gcaud3165.t1 ID=Gcaud3165.t1|Name=Gcaud3165.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MAFLTTTALLTAAFIATAIASLCPAVTDPTQHQFITDAKAVLDGNWVPTM
NSTLPSPNLYPHQWSWDSSFISIGYSHYDTQKAIDETDALFRAQWRNGLL
PHIVFNPNADESYFPGPSFWKIETSNSYPLNSHTSGIVQPPVHAIASLAI
FNNARSAEQKKLALEHLSTIYPKLVNWHNYLYGERDPLNENLVYIRHMWE
SGMDNSPAWDDALNSIQLTADQIPQYTRVDKGKVGDHHERPSAHFYDRAV
HLIKIFYDNQYDESAIFAKSPFIIQDVLFNSILAHAGDALADIAHILGKN
EEEERHRIQAARTAEAISSKLYHEEDGFFYDYDMKSEKLIRTKISGGLVG
VYGAKMDSAKLKSILGHLREPGFLGPDLSGFTIPSVSRDDPGYTNTTYWK
GPAWININYLVRDGLLRNANGNQDAEEIASYLKERSMDMLKTSGFYEYFN
PISGSPHGGHQFSWSAALTIDWMCNASTSSDEVRARNVALVAAVVSLLAA
VAAYVVKSKRGKKTGSGVYPRMKDASDATSKARAHEEFKWTDSMTLLHLR
RRTHTPALIRAGRSN*

mRNA from alignment at NODE_115_length_48887_cov_4.567628:13245..14942+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3165.t1 ID=Gcaud3165.t1|Name=Gcaud3165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:13245..14942+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCCTAACCACAACCGCCTTGCTTACAGCTGCCTTCATCGCCAC
AGCGATTGCATCTCTGTGCCCCGCCGTAACCGATCCTACTCAGCATCAGT
TCATAACTGATGCCAAGGCCGTTCTCGATGGAAACTGGGTGCCGACCATG
AACTCCACGCTCCCATCGCCTAATCTGTATCCGCATCAGTGGTCATGGGA
CTCCTCCTTCATTTCTATCGGTTACAGTCACTATGACACCCAAAAGGCCA
TCGATGAGACCGACGCTCTCTTCAGAGCACAGTGGAGGAACGGCCTCCTG
CCTCACATCGTCTTCAACCCCAACGCTGACGAGTCTTATTTTCCGGGGCC
GTCATTCTGGAAGATCGAAACGTCTAACAGTTATCCTCTCAACTCTCATA
CCTCTGGTATTGTGCAGCCCCCCGTGCACGCTATTGCGTCCCTGGCCATC
TTCAACAATGCCAGATCCGCTGAACAGAAGAAGCTCGCACTAGAGCATCT
TTCTACCATTTACCCCAAACTCGTCAATTGGCATAACTATTTGTATGGTG
AGAGGGATCCTCTCAACGAGAACCTAGTGTACATCCGTCACATGTGGGAG
AGTGGCATGGATAACTCTCCAGCATGGGACGATGCTCTTAACTCCATTCA
GCTAACTGCTGACCAAATCCCGCAGTACACCCGTGTGGACAAGGGTAAGG
TGGGTGATCATCATGAGCGTCCCAGCGCTCATTTCTACGATCGCGCAGTG
CATCTCATTAAGATCTTCTATGACAATCAGTACGATGAGTCTGCCATTTT
TGCAAAATCGCCGTTCATCATTCAAGATGTTTTGTTCAACTCCATCCTGG
CTCATGCTGGTGATGCCCTCGCTGATATTGCACACATTCTTGGAAAGAAT
GAAGAAGAGGAACGTCACCGCATTCAAGCCGCCAGGACAGCTGAAGCCAT
CAGCTCCAAGTTATACCACGAAGAAGATGGCTTCTTCTATGACTATGACA
TGAAGTCTGAGAAGCTCATCCGCACCAAGATATCCGGTGGTCTGGTTGGT
GTGTATGGCGCAAAGATGGATTCAGCTAAGCTCAAATCGATTCTCGGCCA
CCTTCGCGAGCCAGGATTCCTGGGCCCCGACCTTTCAGGATTCACTATCC
CTTCCGTGTCACGTGACGATCCAGGTTACACCAATACTACGTATTGGAAG
GGGCCGGCATGGATCAACATCAACTACTTGGTCAGGGACGGTCTTCTGCG
CAATGCCAACGGCAACCAGGATGCTGAGGAGATCGCTTCCTATCTTAAGG
AACGCAGCATGGACATGCTGAAGACGTCTGGCTTCTACGAGTACTTCAAC
CCCATCTCCGGTTCACCGCATGGCGGGCATCAATTCAGTTGGTCGGCAGC
GTTGACTATCGACTGGATGTGCAACGCGTCGACGTCGTCGGATGAGGTAC
GAGCGCGCAACGTTGCACTTGTGGCAGCTGTGGTGAGTTTGCTTGCGGCT
GTTGCCGCGTACGTGGTGAAGAGCAAGCGAGGCAAGAAGACTGGAAGCGG
CGTGTATCCACGTATGAAGGACGCAAGTGACGCGACCAGCAAGGCACGGG
CACATGAAGAATTCAAGTGGACAGACTCGATGACGCTGCTGCACCTACGC
CGCAGAACGCACACGCCGGCCTTGATTCGCGCTGGCAGGTCCAACTAG

Coding sequence (CDS) from alignment at NODE_115_length_48887_cov_4.567628:13245..14942+

>Gcaud3165.t1 ID=Gcaud3165.t1|Name=Gcaud3165.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1698bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:13245..14942+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCCTAACCACAACCGCCTTGCTTACAGCTGCCTTCATCGCCAC
AGCGATTGCATCTCTGTGCCCCGCCGTAACCGATCCTACTCAGCATCAGT
TCATAACTGATGCCAAGGCCGTTCTCGATGGAAACTGGGTGCCGACCATG
AACTCCACGCTCCCATCGCCTAATCTGTATCCGCATCAGTGGTCATGGGA
CTCCTCCTTCATTTCTATCGGTTACAGTCACTATGACACCCAAAAGGCCA
TCGATGAGACCGACGCTCTCTTCAGAGCACAGTGGAGGAACGGCCTCCTG
CCTCACATCGTCTTCAACCCCAACGCTGACGAGTCTTATTTTCCGGGGCC
GTCATTCTGGAAGATCGAAACGTCTAACAGTTATCCTCTCAACTCTCATA
CCTCTGGTATTGTGCAGCCCCCCGTGCACGCTATTGCGTCCCTGGCCATC
TTCAACAATGCCAGATCCGCTGAACAGAAGAAGCTCGCACTAGAGCATCT
TTCTACCATTTACCCCAAACTCGTCAATTGGCATAACTATTTGTATGGTG
AGAGGGATCCTCTCAACGAGAACCTAGTGTACATCCGTCACATGTGGGAG
AGTGGCATGGATAACTCTCCAGCATGGGACGATGCTCTTAACTCCATTCA
GCTAACTGCTGACCAAATCCCGCAGTACACCCGTGTGGACAAGGGTAAGG
TGGGTGATCATCATGAGCGTCCCAGCGCTCATTTCTACGATCGCGCAGTG
CATCTCATTAAGATCTTCTATGACAATCAGTACGATGAGTCTGCCATTTT
TGCAAAATCGCCGTTCATCATTCAAGATGTTTTGTTCAACTCCATCCTGG
CTCATGCTGGTGATGCCCTCGCTGATATTGCACACATTCTTGGAAAGAAT
GAAGAAGAGGAACGTCACCGCATTCAAGCCGCCAGGACAGCTGAAGCCAT
CAGCTCCAAGTTATACCACGAAGAAGATGGCTTCTTCTATGACTATGACA
TGAAGTCTGAGAAGCTCATCCGCACCAAGATATCCGGTGGTCTGGTTGGT
GTGTATGGCGCAAAGATGGATTCAGCTAAGCTCAAATCGATTCTCGGCCA
CCTTCGCGAGCCAGGATTCCTGGGCCCCGACCTTTCAGGATTCACTATCC
CTTCCGTGTCACGTGACGATCCAGGTTACACCAATACTACGTATTGGAAG
GGGCCGGCATGGATCAACATCAACTACTTGGTCAGGGACGGTCTTCTGCG
CAATGCCAACGGCAACCAGGATGCTGAGGAGATCGCTTCCTATCTTAAGG
AACGCAGCATGGACATGCTGAAGACGTCTGGCTTCTACGAGTACTTCAAC
CCCATCTCCGGTTCACCGCATGGCGGGCATCAATTCAGTTGGTCGGCAGC
GTTGACTATCGACTGGATGTGCAACGCGTCGACGTCGTCGGATGAGGTAC
GAGCGCGCAACGTTGCACTTGTGGCAGCTGTGGTGAGTTTGCTTGCGGCT
GTTGCCGCGTACGTGGTGAAGAGCAAGCGAGGCAAGAAGACTGGAAGCGG
CGTGTATCCACGTATGAAGGACGCAAGTGACGCGACCAGCAAGGCACGGG
CACATGAAGAATTCAAGTGGACAGACTCGATGACGCTGCTGCACCTACGC
CGCAGAACGCACACGCCGGCCTTGATTCGCGCTGGCAGGTCCAACTAG