Gcaud315.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud315.t1
Unique Name	Gcaud315.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3866_length_2844_cov_3.900109	contig	NODE_3866_length_2844_cov_3.900109:2..1009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud315	Gcaud315	Gracilaria caudata M_176_S67 male	gene	NODE_3866_length_2844_cov_3.900109 2..1009 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud315.t1.CDS1	Gcaud315.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3866_length_2844_cov_3.900109 2..1009 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud315.t1.exon1	Gcaud315.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3866_length_2844_cov_3.900109 2..1009 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud315.t1.start1	Gcaud315.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3866_length_2844_cov_3.900109 1007..1009 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud315.t1	Gcaud315.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3866_length_2844_cov_3.900109 2..1009 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3866_length_2844_cov_3.900109:2..1009-
coding sequence from alignment at NODE_3866_length_2844_cov_3.900109:2..1009-

mRNA sequence

>Gcaud315.t1 ID=Gcaud315.t1|Name=Gcaud315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp
LQTCSANGFQCTLDSSITPACPNNEIAVEEVTLKPFRPVEFNLAFNLSEY
MKDYIFLIDACNSTRPALDAVKEELIRFVQNVSSDYNVGVAIYGSESSFD
ARGFSVLQTVTSNGEDAVRALQHIPVLPDGPRSSVQALSILGGSRTVEGA
IESLGFRSRNRAVVLIGDTPGREVPCDAPYFTDLRRSWGFRIQRIVVNIA
SPGLDAALPALHCDQYNIPEGQNPIREGQGSSIAGEYIVHPPVTFDKLFQ
MYDEHRRYIPPRGYLPGWGRRVWITQNTTYRQFGYFQMPYPPPLSDGCNE
RVRMSIPSPWPELLKIPSEKDGKVRLEVEPLACRNG

spliced messenger RNA

>Gcaud315.t1 ID=Gcaud315.t1|Name=Gcaud315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at NODE_3866_length_2844_cov_3.900109:2..1009- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCAAACTTGTTCTGCGAACGGCTTTCAGTGCACTCTTGACTCCTCGAT
AACTCCAGCTTGCCCCAACAATGAGATTGCCGTCGAGGAAGTGACGCTCA
AGCCATTCAGGCCCGTTGAATTCAATCTAGCGTTCAACCTCAGTGAATAC
ATGAAAGATTACATCTTTCTCATCGACGCCTGCAACTCTACGAGACCCGC
ACTAGACGCGGTGAAAGAAGAGCTCATCAGATTTGTACAAAACGTGTCTT
CCGACTACAATGTTGGTGTTGCTATATATGGCTCTGAGAGTTCATTCGAC
GCTCGAGGCTTCTCGGTGTTGCAGACTGTGACTTCCAATGGCGAAGATGC
TGTACGCGCGCTGCAGCACATTCCGGTACTGCCAGACGGACCTCGCTCTT
CAGTACAAGCACTTTCTATTTTAGGCGGCTCACGTACTGTGGAAGGAGCA
ATCGAAAGCTTAGGGTTCCGTTCTCGAAACAGGGCGGTGGTACTTATCGG
AGATACGCCAGGAAGAGAAGTTCCTTGTGACGCACCTTACTTCACTGATC
TCAGGCGCTCGTGGGGTTTTAGAATCCAAAGGATTGTGGTAAATATCGCG
AGCCCGGGACTAGATGCTGCACTCCCTGCTCTTCACTGCGACCAGTACAA
CATCCCCGAGGGGCAGAATCCCATTCGGGAAGGTCAGGGTTCATCCATTG
CCGGAGAATATATAGTACATCCGCCAGTGACGTTTGACAAGCTTTTCCAG
ATGTACGACGAGCATAGGCGATATATTCCTCCAAGAGGATACTTACCCGG
GTGGGGAAGACGCGTGTGGATCACACAGAATACCACGTATCGCCAGTTTG
GATACTTTCAGATGCCTTACCCTCCGCCGCTTTCGGACGGATGTAACGAG
CGGGTGAGGATGAGCATACCTTCTCCGTGGCCGGAACTGCTTAAGATTCC
GAGCGAAAAGGACGGCAAAGTGCGCCTCGAAGTTGAGCCATTGGCTTGCA
GAAATGGC

protein sequence of Gcaud315.t1

>Gcaud315.t1 ID=Gcaud315.t1|Name=Gcaud315.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=336bp
LQTCSANGFQCTLDSSITPACPNNEIAVEEVTLKPFRPVEFNLAFNLSEY
MKDYIFLIDACNSTRPALDAVKEELIRFVQNVSSDYNVGVAIYGSESSFD
ARGFSVLQTVTSNGEDAVRALQHIPVLPDGPRSSVQALSILGGSRTVEGA
IESLGFRSRNRAVVLIGDTPGREVPCDAPYFTDLRRSWGFRIQRIVVNIA
SPGLDAALPALHCDQYNIPEGQNPIREGQGSSIAGEYIVHPPVTFDKLFQ
MYDEHRRYIPPRGYLPGWGRRVWITQNTTYRQFGYFQMPYPPPLSDGCNE
RVRMSIPSPWPELLKIPSEKDGKVRLEVEPLACRNG

mRNA from alignment at NODE_3866_length_2844_cov_3.900109:2..1009-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud315.t1 ID=Gcaud315.t1|Name=Gcaud315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at NODE_3866_length_2844_cov_3.900109:2..1009- (Gracilaria caudata M_176_S67 male)
CTGCAAACTTGTTCTGCGAACGGCTTTCAGTGCACTCTTGACTCCTCGAT
AACTCCAGCTTGCCCCAACAATGAGATTGCCGTCGAGGAAGTGACGCTCA
AGCCATTCAGGCCCGTTGAATTCAATCTAGCGTTCAACCTCAGTGAATAC
ATGAAAGATTACATCTTTCTCATCGACGCCTGCAACTCTACGAGACCCGC
ACTAGACGCGGTGAAAGAAGAGCTCATCAGATTTGTACAAAACGTGTCTT
CCGACTACAATGTTGGTGTTGCTATATATGGCTCTGAGAGTTCATTCGAC
GCTCGAGGCTTCTCGGTGTTGCAGACTGTGACTTCCAATGGCGAAGATGC
TGTACGCGCGCTGCAGCACATTCCGGTACTGCCAGACGGACCTCGCTCTT
CAGTACAAGCACTTTCTATTTTAGGCGGCTCACGTACTGTGGAAGGAGCA
ATCGAAAGCTTAGGGTTCCGTTCTCGAAACAGGGCGGTGGTACTTATCGG
AGATACGCCAGGAAGAGAAGTTCCTTGTGACGCACCTTACTTCACTGATC
TCAGGCGCTCGTGGGGTTTTAGAATCCAAAGGATTGTGGTAAATATCGCG
AGCCCGGGACTAGATGCTGCACTCCCTGCTCTTCACTGCGACCAGTACAA
CATCCCCGAGGGGCAGAATCCCATTCGGGAAGGTCAGGGTTCATCCATTG
CCGGAGAATATATAGTACATCCGCCAGTGACGTTTGACAAGCTTTTCCAG
ATGTACGACGAGCATAGGCGATATATTCCTCCAAGAGGATACTTACCCGG
GTGGGGAAGACGCGTGTGGATCACACAGAATACCACGTATCGCCAGTTTG
GATACTTTCAGATGCCTTACCCTCCGCCGCTTTCGGACGGATGTAACGAG
CGGGTGAGGATGAGCATACCTTCTCCGTGGCCGGAACTGCTTAAGATTCC
GAGCGAAAAGGACGGCAAAGTGCGCCTCGAAGTTGAGCCATTGGCTTGCA
GAAATGGC

Coding sequence (CDS) from alignment at NODE_3866_length_2844_cov_3.900109:2..1009-

>Gcaud315.t1 ID=Gcaud315.t1|Name=Gcaud315.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1008bp|location=Sequence derived from alignment at NODE_3866_length_2844_cov_3.900109:2..1009- (Gracilaria caudata M_176_S67 male)
CTGCAAACTTGTTCTGCGAACGGCTTTCAGTGCACTCTTGACTCCTCGAT
AACTCCAGCTTGCCCCAACAATGAGATTGCCGTCGAGGAAGTGACGCTCA
AGCCATTCAGGCCCGTTGAATTCAATCTAGCGTTCAACCTCAGTGAATAC
ATGAAAGATTACATCTTTCTCATCGACGCCTGCAACTCTACGAGACCCGC
ACTAGACGCGGTGAAAGAAGAGCTCATCAGATTTGTACAAAACGTGTCTT
CCGACTACAATGTTGGTGTTGCTATATATGGCTCTGAGAGTTCATTCGAC
GCTCGAGGCTTCTCGGTGTTGCAGACTGTGACTTCCAATGGCGAAGATGC
TGTACGCGCGCTGCAGCACATTCCGGTACTGCCAGACGGACCTCGCTCTT
CAGTACAAGCACTTTCTATTTTAGGCGGCTCACGTACTGTGGAAGGAGCA
ATCGAAAGCTTAGGGTTCCGTTCTCGAAACAGGGCGGTGGTACTTATCGG
AGATACGCCAGGAAGAGAAGTTCCTTGTGACGCACCTTACTTCACTGATC
TCAGGCGCTCGTGGGGTTTTAGAATCCAAAGGATTGTGGTAAATATCGCG
AGCCCGGGACTAGATGCTGCACTCCCTGCTCTTCACTGCGACCAGTACAA
CATCCCCGAGGGGCAGAATCCCATTCGGGAAGGTCAGGGTTCATCCATTG
CCGGAGAATATATAGTACATCCGCCAGTGACGTTTGACAAGCTTTTCCAG
ATGTACGACGAGCATAGGCGATATATTCCTCCAAGAGGATACTTACCCGG
GTGGGGAAGACGCGTGTGGATCACACAGAATACCACGTATCGCCAGTTTG
GATACTTTCAGATGCCTTACCCTCCGCCGCTTTCGGACGGATGTAACGAG
CGGGTGAGGATGAGCATACCTTCTCCGTGGCCGGAACTGCTTAAGATTCC
GAGCGAAAAGGACGGCAAAGTGCGCCTCGAAGTTGAGCCATTGGCTTGCA
GAAATGGC