Gcaud294.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud294.t1
Unique Name	Gcaud294.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_269_length_32912_cov_5.373328	contig	NODE_269_length_32912_cov_5.373328:1326..2393 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	65071.PYU1_T009594
PFAMs	ADH_N,ADH_zinc_N_2
Max annot lvl	121069\|Pythiales
Evalue	7.81e-57
EggNOG OGs	COG0604@1\|root,KOG1198@2759\|Eukaryota,1MG40@121069\|Pythiales
Description	Source PGD
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud294	Gcaud294	Gracilaria caudata M_176_S67 male	gene	NODE_269_length_32912_cov_5.373328 1326..2393 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud294.t1.start1	Gcaud294.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_269_length_32912_cov_5.373328 1326..1328 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud294.t1.CDS1	Gcaud294.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_269_length_32912_cov_5.373328 1326..2393 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud294.t1.exon1	Gcaud294.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_269_length_32912_cov_5.373328 1326..2393 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud294.t1.stop1	Gcaud294.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_269_length_32912_cov_5.373328 2391..2393 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud294.t1	Gcaud294.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_269_length_32912_cov_5.373328 1326..2393 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_269_length_32912_cov_5.373328:1326..2393+
coding sequence from alignment at NODE_269_length_32912_cov_5.373328:1326..2393+

mRNA sequence

>Gcaud294.t1 ID=Gcaud294.t1|Name=Gcaud294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
MRAAQAKAFGTPAQVLSVSDDVEPPSEPPKNHVLIRVHAVSLSPSDYRML
TGAGDLIKKPPKNKWPYIPGGDLAGVVEQVGEGVTDFHKGDEVVATWDAF
GIGALAELAVVHIKFVYRKPKTLSFAEAAAVIDSSSNALLAIEDAQVKSG
DRVLVLGGSGGVGTSLLQLLRRAKVSHIVTTSTDKELCTKLGADHVVNYC
EVNWWEAPQITEQPFDVVIDCAEGVSAWKKVREHNLIKTGLEGGRFHAVV
VNEWHIEVHHCWQLMSWFMPVVGRLISSRCIPSSPLYTMMLPAPRGDSNR
RMLDIVEEGELKVVIDAESPHRFTTQGVRDAFDKMIARKGHGKIVISILD
DETAQ*

spliced messenger RNA

>Gcaud294.t1 ID=Gcaud294.t1|Name=Gcaud294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_269_length_32912_cov_5.373328:1326..2393+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCCGCACAAGCAAAGGCATTCGGCACTCCCGCTCAAGTCCTTTC
CGTCTCCGATGATGTGGAGCCCCCATCCGAACCGCCCAAGAACCACGTTC
TGATTCGTGTGCATGCTGTCTCGCTGAGCCCGAGCGACTATCGTATGCTC
ACCGGTGCCGGCGACCTAATTAAAAAGCCACCCAAGAACAAATGGCCGTA
CATTCCTGGTGGAGATTTGGCCGGGGTTGTGGAACAGGTTGGAGAAGGCG
TCACTGACTTCCACAAGGGCGACGAAGTTGTTGCCACATGGGACGCGTTT
GGTATTGGCGCCTTGGCAGAGCTGGCTGTCGTTCATATCAAGTTTGTCTA
TCGAAAGCCGAAAACTCTTTCATTCGCTGAGGCTGCGGCCGTCATTGACA
GTTCGTCCAATGCTTTGCTCGCTATTGAGGATGCTCAAGTAAAAAGTGGA
GATCGTGTTCTTGTCTTGGGGGGAAGTGGGGGTGTTGGCACATCCCTTCT
CCAGCTGCTCCGTAGAGCCAAGGTATCGCACATCGTAACCACCTCAACCG
ATAAAGAGCTATGCACAAAGCTTGGTGCAGATCATGTCGTCAACTACTGT
GAAGTAAACTGGTGGGAAGCACCACAAATCACGGAACAACCTTTTGATGT
TGTTATCGATTGTGCTGAAGGTGTGTCAGCGTGGAAAAAAGTGCGAGAGC
ATAATCTAATCAAAACTGGATTAGAAGGTGGTAGGTTCCACGCGGTTGTT
GTGAACGAGTGGCACATAGAAGTGCACCACTGTTGGCAGCTTATGTCCTG
GTTTATGCCTGTTGTTGGAAGGTTGATATCGAGCAGATGCATTCCATCGT
CGCCATTGTACACCATGATGCTTCCTGCTCCCCGAGGAGATTCGAATCGC
CGTATGCTCGACATTGTTGAAGAAGGTGAGCTGAAGGTTGTAATTGACGC
CGAATCTCCGCACAGGTTTACTACACAAGGAGTTCGTGATGCGTTTGACA
AGATGATTGCTAGGAAGGGTCATGGGAAGATTGTTATATCGATTCTAGAT
GACGAAACTGCTCAGTAG

protein sequence of Gcaud294.t1

>Gcaud294.t1 ID=Gcaud294.t1|Name=Gcaud294.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MRAAQAKAFGTPAQVLSVSDDVEPPSEPPKNHVLIRVHAVSLSPSDYRML
TGAGDLIKKPPKNKWPYIPGGDLAGVVEQVGEGVTDFHKGDEVVATWDAF
GIGALAELAVVHIKFVYRKPKTLSFAEAAAVIDSSSNALLAIEDAQVKSG
DRVLVLGGSGGVGTSLLQLLRRAKVSHIVTTSTDKELCTKLGADHVVNYC
EVNWWEAPQITEQPFDVVIDCAEGVSAWKKVREHNLIKTGLEGGRFHAVV
VNEWHIEVHHCWQLMSWFMPVVGRLISSRCIPSSPLYTMMLPAPRGDSNR
RMLDIVEEGELKVVIDAESPHRFTTQGVRDAFDKMIARKGHGKIVISILD
DETAQ*

mRNA from alignment at NODE_269_length_32912_cov_5.373328:1326..2393+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud294.t1 ID=Gcaud294.t1|Name=Gcaud294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_269_length_32912_cov_5.373328:1326..2393+ (Gracilaria caudata M_176_S67 male)
ATGAGGGCCGCACAAGCAAAGGCATTCGGCACTCCCGCTCAAGTCCTTTC
CGTCTCCGATGATGTGGAGCCCCCATCCGAACCGCCCAAGAACCACGTTC
TGATTCGTGTGCATGCTGTCTCGCTGAGCCCGAGCGACTATCGTATGCTC
ACCGGTGCCGGCGACCTAATTAAAAAGCCACCCAAGAACAAATGGCCGTA
CATTCCTGGTGGAGATTTGGCCGGGGTTGTGGAACAGGTTGGAGAAGGCG
TCACTGACTTCCACAAGGGCGACGAAGTTGTTGCCACATGGGACGCGTTT
GGTATTGGCGCCTTGGCAGAGCTGGCTGTCGTTCATATCAAGTTTGTCTA
TCGAAAGCCGAAAACTCTTTCATTCGCTGAGGCTGCGGCCGTCATTGACA
GTTCGTCCAATGCTTTGCTCGCTATTGAGGATGCTCAAGTAAAAAGTGGA
GATCGTGTTCTTGTCTTGGGGGGAAGTGGGGGTGTTGGCACATCCCTTCT
CCAGCTGCTCCGTAGAGCCAAGGTATCGCACATCGTAACCACCTCAACCG
ATAAAGAGCTATGCACAAAGCTTGGTGCAGATCATGTCGTCAACTACTGT
GAAGTAAACTGGTGGGAAGCACCACAAATCACGGAACAACCTTTTGATGT
TGTTATCGATTGTGCTGAAGGTGTGTCAGCGTGGAAAAAAGTGCGAGAGC
ATAATCTAATCAAAACTGGATTAGAAGGTGGTAGGTTCCACGCGGTTGTT
GTGAACGAGTGGCACATAGAAGTGCACCACTGTTGGCAGCTTATGTCCTG
GTTTATGCCTGTTGTTGGAAGGTTGATATCGAGCAGATGCATTCCATCGT
CGCCATTGTACACCATGATGCTTCCTGCTCCCCGAGGAGATTCGAATCGC
CGTATGCTCGACATTGTTGAAGAAGGTGAGCTGAAGGTTGTAATTGACGC
CGAATCTCCGCACAGGTTTACTACACAAGGAGTTCGTGATGCGTTTGACA
AGATGATTGCTAGGAAGGGTCATGGGAAGATTGTTATATCGATTCTAGAT
GACGAAACTGCTCAGTAG

Coding sequence (CDS) from alignment at NODE_269_length_32912_cov_5.373328:1326..2393+

>Gcaud294.t1 ID=Gcaud294.t1|Name=Gcaud294.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_269_length_32912_cov_5.373328:1326..2393+ (Gracilaria caudata M_176_S67 male)
ATGAGGGCCGCACAAGCAAAGGCATTCGGCACTCCCGCTCAAGTCCTTTC
CGTCTCCGATGATGTGGAGCCCCCATCCGAACCGCCCAAGAACCACGTTC
TGATTCGTGTGCATGCTGTCTCGCTGAGCCCGAGCGACTATCGTATGCTC
ACCGGTGCCGGCGACCTAATTAAAAAGCCACCCAAGAACAAATGGCCGTA
CATTCCTGGTGGAGATTTGGCCGGGGTTGTGGAACAGGTTGGAGAAGGCG
TCACTGACTTCCACAAGGGCGACGAAGTTGTTGCCACATGGGACGCGTTT
GGTATTGGCGCCTTGGCAGAGCTGGCTGTCGTTCATATCAAGTTTGTCTA
TCGAAAGCCGAAAACTCTTTCATTCGCTGAGGCTGCGGCCGTCATTGACA
GTTCGTCCAATGCTTTGCTCGCTATTGAGGATGCTCAAGTAAAAAGTGGA
GATCGTGTTCTTGTCTTGGGGGGAAGTGGGGGTGTTGGCACATCCCTTCT
CCAGCTGCTCCGTAGAGCCAAGGTATCGCACATCGTAACCACCTCAACCG
ATAAAGAGCTATGCACAAAGCTTGGTGCAGATCATGTCGTCAACTACTGT
GAAGTAAACTGGTGGGAAGCACCACAAATCACGGAACAACCTTTTGATGT
TGTTATCGATTGTGCTGAAGGTGTGTCAGCGTGGAAAAAAGTGCGAGAGC
ATAATCTAATCAAAACTGGATTAGAAGGTGGTAGGTTCCACGCGGTTGTT
GTGAACGAGTGGCACATAGAAGTGCACCACTGTTGGCAGCTTATGTCCTG
GTTTATGCCTGTTGTTGGAAGGTTGATATCGAGCAGATGCATTCCATCGT
CGCCATTGTACACCATGATGCTTCCTGCTCCCCGAGGAGATTCGAATCGC
CGTATGCTCGACATTGTTGAAGAAGGTGAGCTGAAGGTTGTAATTGACGC
CGAATCTCCGCACAGGTTTACTACACAAGGAGTTCGTGATGCGTTTGACA
AGATGATTGCTAGGAAGGGTCATGGGAAGATTGTTATATCGATTCTAGAT
GACGAAACTGCTCAGTAG