Gcaud2860.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2860.t1
Unique NameGcaud2860.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_7_length_102599_cov_4.541909contigNODE_7_length_102599_cov_4.541909:92923..94134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog765913.ThidrDRAFT_3678
PFAMsGlycos_transf_2
Max annot lvl135613|Chromatiales
Evalue1.37e-05
EggNOG OGsCOG0463@1|root,COG0463@2|Bacteria,1QXZ7@1224|Proteobacteria,1T4SI@1236|Gammaproteobacteria,1X2T4@135613|Chromatiales
DescriptionPFAM Glycosyl transferase family 2
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2860Gcaud2860Gracilaria caudata M_176_S67 malegeneNODE_7_length_102599_cov_4.541909 92923..94134 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2860.t1.stop1Gcaud2860.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_7_length_102599_cov_4.541909 92923..92925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2860.t1.CDS1Gcaud2860.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_7_length_102599_cov_4.541909 92923..94134 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2860.t1.exon1Gcaud2860.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_7_length_102599_cov_4.541909 92923..94134 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2860.t1.start1Gcaud2860.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_7_length_102599_cov_4.541909 94132..94134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2860.t1Gcaud2860.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_7_length_102599_cov_4.541909 92923..94134 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2860.t1 ID=Gcaud2860.t1|Name=Gcaud2860.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=404bp
MAQTSRMKCVTWLLVQAMLFFALVHIFSIGSAAHPVTSITSVKRKPSSLP
ISSGDLSYAKMDPRIDPCAGRPTPHPVPSNLSRPPSLFFLHIPKTAGTLV
YNIAIQYANKTKGLACQFLFDGNRYSCDQYHPSFTPVSGFPTNSLEEQAV
KAWKDKDMELKTDLYEKGACRSIRGHVTYTLHDVIKNPVVSMTIMRHPLE
RLVSMFEFALMMIDTQPNQSGWDSWLSGVPLERELANVSSILNRGFYDAN
GEWIAKDNIGFSFHFYGVLHQLSGIRPIFRDIGKPKSFRMANAKEMSQKA
KDNLCSTHILGLQNNMNATLNAIFDYLLPYAQWTSKEKETAKHAIVNRNN
RKRGSRFRDYIPTPALRELERRLGHEIEVYHFAEAIVAHRQWVKGNKLMK
TSA*
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spliced messenger RNA

>Gcaud2860.t1 ID=Gcaud2860.t1|Name=Gcaud2860.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:92923..94134- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGACTTCTAGAATGAAATGTGTAACATGGCTTCTAGTTCAAGC
AATGCTCTTCTTTGCTCTCGTTCACATCTTCTCAATTGGATCCGCGGCCC
ATCCTGTAACCAGCATAACTTCTGTCAAGAGAAAGCCCTCGAGCCTTCCA
ATTTCATCCGGTGACTTATCTTATGCAAAGATGGATCCCAGAATAGACCC
TTGCGCCGGAAGGCCCACACCGCACCCTGTTCCTAGTAACCTTTCTCGAC
CTCCTTCTCTCTTCTTCTTGCACATCCCGAAAACTGCAGGGACTTTGGTA
TACAACATTGCCATCCAGTATGCAAACAAAACCAAAGGTCTTGCGTGCCA
GTTTCTGTTCGACGGAAATCGATACTCATGTGATCAGTACCATCCGAGCT
TTACCCCGGTTTCAGGGTTTCCCACAAATTCTCTCGAAGAACAAGCTGTC
AAGGCTTGGAAAGACAAGGATATGGAGTTGAAAACAGATTTATACGAAAA
GGGAGCCTGTAGGAGTATTCGTGGACATGTGACGTACACTTTGCATGATG
TCATTAAGAATCCCGTGGTATCCATGACCATTATGCGTCACCCTTTGGAG
CGATTAGTGAGTATGTTTGAGTTTGCCTTGATGATGATCGACACTCAACC
AAATCAGAGCGGATGGGATTCATGGTTATCTGGAGTTCCATTGGAACGCG
AACTTGCCAACGTGTCTTCCATTCTTAACAGAGGTTTCTACGATGCCAAC
GGTGAATGGATTGCCAAGGACAACATTGGGTTTTCCTTTCACTTCTATGG
GGTACTGCATCAACTCTCTGGAATTCGGCCGATCTTTCGAGATATCGGGA
AACCCAAATCCTTCCGCATGGCAAACGCAAAGGAGATGTCTCAGAAAGCC
AAGGATAACCTATGCTCCACTCATATACTCGGCCTGCAGAACAATATGAA
TGCTACGTTGAACGCCATCTTCGATTACCTGCTCCCCTATGCCCAATGGA
CTTCCAAAGAGAAAGAAACTGCGAAACATGCTATTGTGAACCGCAATAAC
CGCAAGAGAGGTTCACGATTTAGAGACTATATTCCTACGCCTGCACTGAG
AGAACTCGAACGGCGTCTAGGGCACGAGATTGAGGTATATCATTTCGCTG
AAGCCATCGTTGCCCATCGTCAGTGGGTGAAGGGCAACAAACTGATGAAA
ACTTCAGCTTAA
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protein sequence of Gcaud2860.t1

>Gcaud2860.t1 ID=Gcaud2860.t1|Name=Gcaud2860.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=404bp
MAQTSRMKCVTWLLVQAMLFFALVHIFSIGSAAHPVTSITSVKRKPSSLP
ISSGDLSYAKMDPRIDPCAGRPTPHPVPSNLSRPPSLFFLHIPKTAGTLV
YNIAIQYANKTKGLACQFLFDGNRYSCDQYHPSFTPVSGFPTNSLEEQAV
KAWKDKDMELKTDLYEKGACRSIRGHVTYTLHDVIKNPVVSMTIMRHPLE
RLVSMFEFALMMIDTQPNQSGWDSWLSGVPLERELANVSSILNRGFYDAN
GEWIAKDNIGFSFHFYGVLHQLSGIRPIFRDIGKPKSFRMANAKEMSQKA
KDNLCSTHILGLQNNMNATLNAIFDYLLPYAQWTSKEKETAKHAIVNRNN
RKRGSRFRDYIPTPALRELERRLGHEIEVYHFAEAIVAHRQWVKGNKLMK
TSA*
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mRNA from alignment at NODE_7_length_102599_cov_4.541909:92923..94134-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2860.t1 ID=Gcaud2860.t1|Name=Gcaud2860.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:92923..94134- (Gracilaria caudata M_176_S67 male)
ATGGCTCAGACTTCTAGAATGAAATGTGTAACATGGCTTCTAGTTCAAGC
AATGCTCTTCTTTGCTCTCGTTCACATCTTCTCAATTGGATCCGCGGCCC
ATCCTGTAACCAGCATAACTTCTGTCAAGAGAAAGCCCTCGAGCCTTCCA
ATTTCATCCGGTGACTTATCTTATGCAAAGATGGATCCCAGAATAGACCC
TTGCGCCGGAAGGCCCACACCGCACCCTGTTCCTAGTAACCTTTCTCGAC
CTCCTTCTCTCTTCTTCTTGCACATCCCGAAAACTGCAGGGACTTTGGTA
TACAACATTGCCATCCAGTATGCAAACAAAACCAAAGGTCTTGCGTGCCA
GTTTCTGTTCGACGGAAATCGATACTCATGTGATCAGTACCATCCGAGCT
TTACCCCGGTTTCAGGGTTTCCCACAAATTCTCTCGAAGAACAAGCTGTC
AAGGCTTGGAAAGACAAGGATATGGAGTTGAAAACAGATTTATACGAAAA
GGGAGCCTGTAGGAGTATTCGTGGACATGTGACGTACACTTTGCATGATG
TCATTAAGAATCCCGTGGTATCCATGACCATTATGCGTCACCCTTTGGAG
CGATTAGTGAGTATGTTTGAGTTTGCCTTGATGATGATCGACACTCAACC
AAATCAGAGCGGATGGGATTCATGGTTATCTGGAGTTCCATTGGAACGCG
AACTTGCCAACGTGTCTTCCATTCTTAACAGAGGTTTCTACGATGCCAAC
GGTGAATGGATTGCCAAGGACAACATTGGGTTTTCCTTTCACTTCTATGG
GGTACTGCATCAACTCTCTGGAATTCGGCCGATCTTTCGAGATATCGGGA
AACCCAAATCCTTCCGCATGGCAAACGCAAAGGAGATGTCTCAGAAAGCC
AAGGATAACCTATGCTCCACTCATATACTCGGCCTGCAGAACAATATGAA
TGCTACGTTGAACGCCATCTTCGATTACCTGCTCCCCTATGCCCAATGGA
CTTCCAAAGAGAAAGAAACTGCGAAACATGCTATTGTGAACCGCAATAAC
CGCAAGAGAGGTTCACGATTTAGAGACTATATTCCTACGCCTGCACTGAG
AGAACTCGAACGGCGTCTAGGGCACGAGATTGAGGTATATCATTTCGCTG
AAGCCATCGTTGCCCATCGTCAGTGGGTGAAGGGCAACAAACTGATGAAA
ACTTCAGCTTAA
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Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:92923..94134-

>Gcaud2860.t1 ID=Gcaud2860.t1|Name=Gcaud2860.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1212bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:92923..94134- (Gracilaria caudata M_176_S67 male)
ATGGCTCAGACTTCTAGAATGAAATGTGTAACATGGCTTCTAGTTCAAGC
AATGCTCTTCTTTGCTCTCGTTCACATCTTCTCAATTGGATCCGCGGCCC
ATCCTGTAACCAGCATAACTTCTGTCAAGAGAAAGCCCTCGAGCCTTCCA
ATTTCATCCGGTGACTTATCTTATGCAAAGATGGATCCCAGAATAGACCC
TTGCGCCGGAAGGCCCACACCGCACCCTGTTCCTAGTAACCTTTCTCGAC
CTCCTTCTCTCTTCTTCTTGCACATCCCGAAAACTGCAGGGACTTTGGTA
TACAACATTGCCATCCAGTATGCAAACAAAACCAAAGGTCTTGCGTGCCA
GTTTCTGTTCGACGGAAATCGATACTCATGTGATCAGTACCATCCGAGCT
TTACCCCGGTTTCAGGGTTTCCCACAAATTCTCTCGAAGAACAAGCTGTC
AAGGCTTGGAAAGACAAGGATATGGAGTTGAAAACAGATTTATACGAAAA
GGGAGCCTGTAGGAGTATTCGTGGACATGTGACGTACACTTTGCATGATG
TCATTAAGAATCCCGTGGTATCCATGACCATTATGCGTCACCCTTTGGAG
CGATTAGTGAGTATGTTTGAGTTTGCCTTGATGATGATCGACACTCAACC
AAATCAGAGCGGATGGGATTCATGGTTATCTGGAGTTCCATTGGAACGCG
AACTTGCCAACGTGTCTTCCATTCTTAACAGAGGTTTCTACGATGCCAAC
GGTGAATGGATTGCCAAGGACAACATTGGGTTTTCCTTTCACTTCTATGG
GGTACTGCATCAACTCTCTGGAATTCGGCCGATCTTTCGAGATATCGGGA
AACCCAAATCCTTCCGCATGGCAAACGCAAAGGAGATGTCTCAGAAAGCC
AAGGATAACCTATGCTCCACTCATATACTCGGCCTGCAGAACAATATGAA
TGCTACGTTGAACGCCATCTTCGATTACCTGCTCCCCTATGCCCAATGGA
CTTCCAAAGAGAAAGAAACTGCGAAACATGCTATTGTGAACCGCAATAAC
CGCAAGAGAGGTTCACGATTTAGAGACTATATTCCTACGCCTGCACTGAG
AGAACTCGAACGGCGTCTAGGGCACGAGATTGAGGTATATCATTTCGCTG
AAGCCATCGTTGCCCATCGTCAGTGGGTGAAGGGCAACAAACTGATGAAA
ACTTCAGCTTAA
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