Gcaud2827.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2827.t1
Unique Name	Gcaud2827.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	417

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7_length_102599_cov_4.541909	contig	NODE_7_length_102599_cov_4.541909:14376..15626 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706414.1
PFAMs	60KD_IMP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03217
KEGG TC	2.A.9
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue	6.7e-50
EggNOG OGs	COG0706@1\|root,KOG1239@2759\|Eukaryota
Description	membrane insertase activity
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2827	Gcaud2827	Gracilaria caudata M_176_S67 male	gene	NODE_7_length_102599_cov_4.541909 14376..15626 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2827.t1.start1	Gcaud2827.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_7_length_102599_cov_4.541909 14376..14378 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2827.t1.CDS1	Gcaud2827.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7_length_102599_cov_4.541909 14376..15626 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2827.t1.exon1	Gcaud2827.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7_length_102599_cov_4.541909 14376..15626 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2827.t1.stop1	Gcaud2827.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7_length_102599_cov_4.541909 15624..15626 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2827.t1	Gcaud2827.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7_length_102599_cov_4.541909 14376..15626 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7_length_102599_cov_4.541909:14376..15626+
coding sequence from alignment at NODE_7_length_102599_cov_4.541909:14376..15626+

mRNA sequence

>Gcaud2827.t1 ID=Gcaud2827.t1|Name=Gcaud2827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp
MNRVLLAHLSAKTLRRSAPSKLFPLYGNPRYLSTIPSAHSTTTSNFLSNV
AYADEKTADHRAARPDSSNSVDQIPSVTDQSQAVDIATLENVNAATDAVA
ATDAAITGAEVASSSFSLSDTLLQPAISLLNITHDATNLPWYLAIAASTV
FIRTMLLPATIMTMKNSAKMQAIQPDIMEKREEVMQAIKTGNRPLANRKQ
QEMQDFMRNAGVAPAKVLIGPLVQLPVFISFFVSVRRLSQSDPTFVGGGV
AWFTDLSVMDPTYVLPVVCGATLLGMTEFGADTGSTKMSPQMKNGMRIVA
ALSVPLTYWFPAAVFCYWIPNNVFSVVLGAAMRTKSIRKMVGIDVNPASI
PGTRAAKERETKIAVLARKAGVSKEINVEQVLASYGKQPTALGDGTVAKP
VLFKQKPKKKMSVAAN*

spliced messenger RNA

>Gcaud2827.t1 ID=Gcaud2827.t1|Name=Gcaud2827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:14376..15626+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGAGTTTTGCTTGCGCATCTTAGTGCGAAAACGCTGAGAAGGTC
AGCGCCGTCAAAATTGTTCCCGCTCTACGGAAACCCCCGGTATCTGTCCA
CAATCCCATCTGCGCACTCAACAACCACCTCAAATTTCTTATCAAACGTT
GCGTACGCAGACGAAAAAACGGCAGACCACCGCGCTGCTCGCCCCGATTC
TTCAAACAGTGTGGACCAGATTCCCAGTGTCACGGATCAGTCTCAAGCGG
TTGATATAGCAACACTTGAAAATGTCAATGCTGCGACCGATGCCGTGGCA
GCCACCGACGCGGCGATAACTGGTGCAGAAGTTGCTTCTTCATCGTTTTC
TTTGTCTGACACACTATTGCAACCCGCGATCTCTCTGTTAAATATAACCC
ATGATGCAACAAATTTACCTTGGTACCTGGCGATAGCAGCTTCAACAGTT
TTCATACGGACTATGCTACTCCCAGCCACAATAATGACAATGAAAAACTC
TGCGAAGATGCAAGCGATACAGCCAGACATTATGGAGAAACGAGAAGAGG
TAATGCAAGCCATAAAGACGGGCAATCGACCTCTAGCTAATCGTAAACAG
CAAGAAATGCAAGACTTCATGAGAAACGCAGGTGTAGCTCCAGCAAAAGT
TTTGATCGGCCCGCTCGTTCAACTTCCTGTTTTTATCTCGTTTTTCGTTA
GCGTAAGACGTCTATCACAATCTGATCCGACTTTCGTCGGCGGTGGCGTT
GCATGGTTTACCGATTTATCAGTGATGGATCCAACATACGTTTTGCCAGT
AGTTTGTGGTGCTACTTTGCTCGGCATGACCGAATTTGGAGCCGATACGG
GGTCAACGAAGATGTCTCCCCAAATGAAGAATGGAATGCGTATAGTTGCT
GCATTGTCAGTACCTCTTACTTACTGGTTCCCAGCAGCAGTCTTCTGTTA
CTGGATACCGAATAACGTGTTCTCTGTGGTGCTTGGCGCAGCAATGCGCA
CCAAGAGCATTAGAAAAATGGTAGGCATTGATGTGAACCCTGCATCAATT
CCAGGCACTCGCGCTGCAAAAGAGCGCGAGACAAAGATTGCTGTTCTCGC
CCGAAAGGCCGGGGTGTCCAAGGAAATCAATGTTGAGCAAGTTCTCGCAA
GCTATGGGAAACAACCTACAGCTCTAGGTGATGGGACGGTTGCCAAACCC
GTCCTGTTCAAACAAAAACCAAAGAAGAAGATGAGTGTGGCTGCAAATTG
A

protein sequence of Gcaud2827.t1

>Gcaud2827.t1 ID=Gcaud2827.t1|Name=Gcaud2827.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=417bp
MNRVLLAHLSAKTLRRSAPSKLFPLYGNPRYLSTIPSAHSTTTSNFLSNV
AYADEKTADHRAARPDSSNSVDQIPSVTDQSQAVDIATLENVNAATDAVA
ATDAAITGAEVASSSFSLSDTLLQPAISLLNITHDATNLPWYLAIAASTV
FIRTMLLPATIMTMKNSAKMQAIQPDIMEKREEVMQAIKTGNRPLANRKQ
QEMQDFMRNAGVAPAKVLIGPLVQLPVFISFFVSVRRLSQSDPTFVGGGV
AWFTDLSVMDPTYVLPVVCGATLLGMTEFGADTGSTKMSPQMKNGMRIVA
ALSVPLTYWFPAAVFCYWIPNNVFSVVLGAAMRTKSIRKMVGIDVNPASI
PGTRAAKERETKIAVLARKAGVSKEINVEQVLASYGKQPTALGDGTVAKP
VLFKQKPKKKMSVAAN*

mRNA from alignment at NODE_7_length_102599_cov_4.541909:14376..15626+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2827.t1 ID=Gcaud2827.t1|Name=Gcaud2827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:14376..15626+ (Gracilaria caudata M_176_S67 male)
ATGAATAGAGTTTTGCTTGCGCATCTTAGTGCGAAAACGCTGAGAAGGTC
AGCGCCGTCAAAATTGTTCCCGCTCTACGGAAACCCCCGGTATCTGTCCA
CAATCCCATCTGCGCACTCAACAACCACCTCAAATTTCTTATCAAACGTT
GCGTACGCAGACGAAAAAACGGCAGACCACCGCGCTGCTCGCCCCGATTC
TTCAAACAGTGTGGACCAGATTCCCAGTGTCACGGATCAGTCTCAAGCGG
TTGATATAGCAACACTTGAAAATGTCAATGCTGCGACCGATGCCGTGGCA
GCCACCGACGCGGCGATAACTGGTGCAGAAGTTGCTTCTTCATCGTTTTC
TTTGTCTGACACACTATTGCAACCCGCGATCTCTCTGTTAAATATAACCC
ATGATGCAACAAATTTACCTTGGTACCTGGCGATAGCAGCTTCAACAGTT
TTCATACGGACTATGCTACTCCCAGCCACAATAATGACAATGAAAAACTC
TGCGAAGATGCAAGCGATACAGCCAGACATTATGGAGAAACGAGAAGAGG
TAATGCAAGCCATAAAGACGGGCAATCGACCTCTAGCTAATCGTAAACAG
CAAGAAATGCAAGACTTCATGAGAAACGCAGGTGTAGCTCCAGCAAAAGT
TTTGATCGGCCCGCTCGTTCAACTTCCTGTTTTTATCTCGTTTTTCGTTA
GCGTAAGACGTCTATCACAATCTGATCCGACTTTCGTCGGCGGTGGCGTT
GCATGGTTTACCGATTTATCAGTGATGGATCCAACATACGTTTTGCCAGT
AGTTTGTGGTGCTACTTTGCTCGGCATGACCGAATTTGGAGCCGATACGG
GGTCAACGAAGATGTCTCCCCAAATGAAGAATGGAATGCGTATAGTTGCT
GCATTGTCAGTACCTCTTACTTACTGGTTCCCAGCAGCAGTCTTCTGTTA
CTGGATACCGAATAACGTGTTCTCTGTGGTGCTTGGCGCAGCAATGCGCA
CCAAGAGCATTAGAAAAATGGTAGGCATTGATGTGAACCCTGCATCAATT
CCAGGCACTCGCGCTGCAAAAGAGCGCGAGACAAAGATTGCTGTTCTCGC
CCGAAAGGCCGGGGTGTCCAAGGAAATCAATGTTGAGCAAGTTCTCGCAA
GCTATGGGAAACAACCTACAGCTCTAGGTGATGGGACGGTTGCCAAACCC
GTCCTGTTCAAACAAAAACCAAAGAAGAAGATGAGTGTGGCTGCAAATTG
A

Coding sequence (CDS) from alignment at NODE_7_length_102599_cov_4.541909:14376..15626+

>Gcaud2827.t1 ID=Gcaud2827.t1|Name=Gcaud2827.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1251bp|location=Sequence derived from alignment at NODE_7_length_102599_cov_4.541909:14376..15626+ (Gracilaria caudata M_176_S67 male)
ATGAATAGAGTTTTGCTTGCGCATCTTAGTGCGAAAACGCTGAGAAGGTC
AGCGCCGTCAAAATTGTTCCCGCTCTACGGAAACCCCCGGTATCTGTCCA
CAATCCCATCTGCGCACTCAACAACCACCTCAAATTTCTTATCAAACGTT
GCGTACGCAGACGAAAAAACGGCAGACCACCGCGCTGCTCGCCCCGATTC
TTCAAACAGTGTGGACCAGATTCCCAGTGTCACGGATCAGTCTCAAGCGG
TTGATATAGCAACACTTGAAAATGTCAATGCTGCGACCGATGCCGTGGCA
GCCACCGACGCGGCGATAACTGGTGCAGAAGTTGCTTCTTCATCGTTTTC
TTTGTCTGACACACTATTGCAACCCGCGATCTCTCTGTTAAATATAACCC
ATGATGCAACAAATTTACCTTGGTACCTGGCGATAGCAGCTTCAACAGTT
TTCATACGGACTATGCTACTCCCAGCCACAATAATGACAATGAAAAACTC
TGCGAAGATGCAAGCGATACAGCCAGACATTATGGAGAAACGAGAAGAGG
TAATGCAAGCCATAAAGACGGGCAATCGACCTCTAGCTAATCGTAAACAG
CAAGAAATGCAAGACTTCATGAGAAACGCAGGTGTAGCTCCAGCAAAAGT
TTTGATCGGCCCGCTCGTTCAACTTCCTGTTTTTATCTCGTTTTTCGTTA
GCGTAAGACGTCTATCACAATCTGATCCGACTTTCGTCGGCGGTGGCGTT
GCATGGTTTACCGATTTATCAGTGATGGATCCAACATACGTTTTGCCAGT
AGTTTGTGGTGCTACTTTGCTCGGCATGACCGAATTTGGAGCCGATACGG
GGTCAACGAAGATGTCTCCCCAAATGAAGAATGGAATGCGTATAGTTGCT
GCATTGTCAGTACCTCTTACTTACTGGTTCCCAGCAGCAGTCTTCTGTTA
CTGGATACCGAATAACGTGTTCTCTGTGGTGCTTGGCGCAGCAATGCGCA
CCAAGAGCATTAGAAAAATGGTAGGCATTGATGTGAACCCTGCATCAATT
CCAGGCACTCGCGCTGCAAAAGAGCGCGAGACAAAGATTGCTGTTCTCGC
CCGAAAGGCCGGGGTGTCCAAGGAAATCAATGTTGAGCAAGTTCTCGCAA
GCTATGGGAAACAACCTACAGCTCTAGGTGATGGGACGGTTGCCAAACCC
GTCCTGTTCAAACAAAAACCAAAGAAGAAGATGAGTGTGGCTGCAAATTG
A