Gcaud2735.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2735.t1
Unique NameGcaud2735.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_835_length_17303_cov_4.798745contigNODE_835_length_17303_cov_4.798745:9356..9967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2735Gcaud2735Gracilaria caudata M_176_S67 malegeneNODE_835_length_17303_cov_4.798745 9356..9967 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2735.t1.start1Gcaud2735.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_835_length_17303_cov_4.798745 9356..9358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2735.t1.CDS1Gcaud2735.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_835_length_17303_cov_4.798745 9356..9967 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2735.t1.exon1Gcaud2735.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_835_length_17303_cov_4.798745 9356..9967 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2735.t1.stop1Gcaud2735.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_835_length_17303_cov_4.798745 9965..9967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2735.t1Gcaud2735.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_835_length_17303_cov_4.798745 9356..9967 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2735.t1 ID=Gcaud2735.t1|Name=Gcaud2735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=204bp
MVASLNILGLFSLLFVCLSFIGSAEAKLFPKVLGADRPFYRTAYKSSLVR
IPEEFCADAIRSEECKKCSECDLSKDDCTKLFASDTCWPAPTEAKCDLCF
SAYGDTIFPKRLFTKSSVFTGFKSFGRVSQRKAFFSHIVDPGYCDFLKGT
GICEPCSKCMGEGSSFSKCQIMFKTETCWPVPKEESCYKCFEEFGPEVFP
EGA*
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spliced messenger RNA

>Gcaud2735.t1 ID=Gcaud2735.t1|Name=Gcaud2735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp|location=Sequence derived from alignment at NODE_835_length_17303_cov_4.798745:9356..9967+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCTTCTCTGAACATCTTGGGGCTGTTTTCTTTGCTGTTTGTCTG
TCTGTCGTTCATCGGCTCGGCTGAAGCTAAATTGTTCCCGAAGGTGCTTG
GAGCAGATCGCCCGTTCTACAGAACAGCTTACAAGTCCTCTCTCGTAAGG
ATCCCGGAAGAGTTCTGTGCAGATGCAATAAGGTCTGAAGAGTGTAAGAA
GTGTTCCGAATGTGATCTGAGTAAGGACGACTGCACAAAACTTTTCGCGT
CGGATACATGCTGGCCGGCTCCAACTGAAGCGAAGTGCGACTTGTGCTTC
AGTGCATATGGAGACACTATCTTCCCCAAAAGACTGTTCACGAAGTCGAG
TGTATTTACTGGTTTCAAGAGTTTTGGCCGTGTGTCGCAAAGAAAGGCTT
TCTTCTCGCACATAGTGGATCCTGGTTACTGTGACTTTTTGAAGGGAACT
GGTATATGCGAGCCATGCAGCAAGTGCATGGGAGAAGGTTCGTCGTTCTC
GAAATGTCAGATTATGTTCAAAACCGAAACCTGCTGGCCTGTTCCGAAAG
AAGAATCGTGTTACAAATGCTTCGAAGAATTTGGTCCCGAAGTTTTCCCT
GAAGGGGCTTAG
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protein sequence of Gcaud2735.t1

>Gcaud2735.t1 ID=Gcaud2735.t1|Name=Gcaud2735.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=204bp
MVASLNILGLFSLLFVCLSFIGSAEAKLFPKVLGADRPFYRTAYKSSLVR
IPEEFCADAIRSEECKKCSECDLSKDDCTKLFASDTCWPAPTEAKCDLCF
SAYGDTIFPKRLFTKSSVFTGFKSFGRVSQRKAFFSHIVDPGYCDFLKGT
GICEPCSKCMGEGSSFSKCQIMFKTETCWPVPKEESCYKCFEEFGPEVFP
EGA*
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mRNA from alignment at NODE_835_length_17303_cov_4.798745:9356..9967+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2735.t1 ID=Gcaud2735.t1|Name=Gcaud2735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp|location=Sequence derived from alignment at NODE_835_length_17303_cov_4.798745:9356..9967+ (Gracilaria caudata M_176_S67 male)
ATGGTCGCTTCTCTGAACATCTTGGGGCTGTTTTCTTTGCTGTTTGTCTG
TCTGTCGTTCATCGGCTCGGCTGAAGCTAAATTGTTCCCGAAGGTGCTTG
GAGCAGATCGCCCGTTCTACAGAACAGCTTACAAGTCCTCTCTCGTAAGG
ATCCCGGAAGAGTTCTGTGCAGATGCAATAAGGTCTGAAGAGTGTAAGAA
GTGTTCCGAATGTGATCTGAGTAAGGACGACTGCACAAAACTTTTCGCGT
CGGATACATGCTGGCCGGCTCCAACTGAAGCGAAGTGCGACTTGTGCTTC
AGTGCATATGGAGACACTATCTTCCCCAAAAGACTGTTCACGAAGTCGAG
TGTATTTACTGGTTTCAAGAGTTTTGGCCGTGTGTCGCAAAGAAAGGCTT
TCTTCTCGCACATAGTGGATCCTGGTTACTGTGACTTTTTGAAGGGAACT
GGTATATGCGAGCCATGCAGCAAGTGCATGGGAGAAGGTTCGTCGTTCTC
GAAATGTCAGATTATGTTCAAAACCGAAACCTGCTGGCCTGTTCCGAAAG
AAGAATCGTGTTACAAATGCTTCGAAGAATTTGGTCCCGAAGTTTTCCCT
GAAGGGGCTTAG
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Coding sequence (CDS) from alignment at NODE_835_length_17303_cov_4.798745:9356..9967+

>Gcaud2735.t1 ID=Gcaud2735.t1|Name=Gcaud2735.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=612bp|location=Sequence derived from alignment at NODE_835_length_17303_cov_4.798745:9356..9967+ (Gracilaria caudata M_176_S67 male)
ATGGTCGCTTCTCTGAACATCTTGGGGCTGTTTTCTTTGCTGTTTGTCTG
TCTGTCGTTCATCGGCTCGGCTGAAGCTAAATTGTTCCCGAAGGTGCTTG
GAGCAGATCGCCCGTTCTACAGAACAGCTTACAAGTCCTCTCTCGTAAGG
ATCCCGGAAGAGTTCTGTGCAGATGCAATAAGGTCTGAAGAGTGTAAGAA
GTGTTCCGAATGTGATCTGAGTAAGGACGACTGCACAAAACTTTTCGCGT
CGGATACATGCTGGCCGGCTCCAACTGAAGCGAAGTGCGACTTGTGCTTC
AGTGCATATGGAGACACTATCTTCCCCAAAAGACTGTTCACGAAGTCGAG
TGTATTTACTGGTTTCAAGAGTTTTGGCCGTGTGTCGCAAAGAAAGGCTT
TCTTCTCGCACATAGTGGATCCTGGTTACTGTGACTTTTTGAAGGGAACT
GGTATATGCGAGCCATGCAGCAAGTGCATGGGAGAAGGTTCGTCGTTCTC
GAAATGTCAGATTATGTTCAAAACCGAAACCTGCTGGCCTGTTCCGAAAG
AAGAATCGTGTTACAAATGCTTCGAAGAATTTGGTCCCGAAGTTTTCCCT
GAAGGGGCTTAG
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