Gcaud2643.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2643.t1
Unique Name	Gcaud2643.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	220

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_145_length_43658_cov_4.983588	contig	NODE_145_length_43658_cov_4.983588:16417..17076 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_01872T0
Preferred name	PSF3
PFAMs	Sld5
Max annot lvl	4751\|Fungi
KEGG ko	ko:K10734
KEGG Module	M00286
GOs	GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022402,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071162,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902292,GO:1902315,GO:1902969,GO:1902975,GO:1903047
Evalue	1.2e-23
EggNOG OGs	COG5138@1\|root,KOG1106@2759\|Eukaryota,3A050@33154\|Opisthokonta,3P24V@4751\|Fungi
Description	Dna replication complex gins protein psf3
COG category	L
BRITE	ko00000,ko00002,ko03032

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2643	Gcaud2643	Gracilaria caudata M_176_S67 male	gene	NODE_145_length_43658_cov_4.983588 16417..17076 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2643.t1.start1	Gcaud2643.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_145_length_43658_cov_4.983588 16417..16419 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2643.t1.CDS1	Gcaud2643.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_145_length_43658_cov_4.983588 16417..17076 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2643.t1.exon1	Gcaud2643.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_145_length_43658_cov_4.983588 16417..17076 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2643.t1.stop1	Gcaud2643.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_145_length_43658_cov_4.983588 17074..17076 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2643.t1	Gcaud2643.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_145_length_43658_cov_4.983588 16417..17076 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_145_length_43658_cov_4.983588:16417..17076+
coding sequence from alignment at NODE_145_length_43658_cov_4.983588:16417..17076+

mRNA sequence

>Gcaud2643.t1 ID=Gcaud2643.t1|Name=Gcaud2643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
MEDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELE
DNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRAD
TRSVDLAAKCSSYFALGVQLAKLIVDVALPGVLVRAFAARCWGIADSAAF
SGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRISAMNNVLGK
RPREELGSPVTPSTRPRTS*

spliced messenger RNA

>Gcaud2643.t1 ID=Gcaud2643.t1|Name=Gcaud2643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:16417..17076+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGATTACTTTTCAATCGACGACATTCTTGCTGGTGACCATCGCAT
CTTCACTACATTCCTTCATGAGGGCTATAACCTCGGTTTCCTTGACCCTA
TGGGTGTCTCAGAATGGAACGCCTCACACCGAACGCCGGAAGAACTGGAG
GACAACCCGAACATTGACAAGGATATGCCACAAGGCATGCGAGTAGCCCT
GCCTTTTTGGCTCGCCCAAAGTCTTCTCACTCGGAACTTCGTAAAACTCG
AGCTACCAAGATGCTATGGGAAGCAAGTGAGACAGGCTCTGCGCGCCGAT
ACGCGTTCAGTGGATCTAGCTGCAAAGTGCAGCTCGTACTTTGCTTTAGG
TGTACAGCTCGCCAAGCTGATTGTTGATGTGGCCTTGCCAGGTGTGCTTG
TCCGGGCGTTTGCAGCTCGGTGTTGGGGAATTGCTGACTCTGCGGCTTTT
TCGGGGGACAAAGGGGCTTTGGCTATGAAAGGGCTGGATTGGCTTGAATG
CGAGCTGTTTCAGGAAGCGCATGCCATGGCTGTCGCTATAAGAAGGTGGA
AGGAACGGCGCAGCGATAGAATATCTGCGATGAACAACGTGCTGGGCAAG
AGACCACGGGAAGAACTCGGTAGTCCGGTGACACCGTCAACTCGTCCGCG
AACAAGCTAA

protein sequence of Gcaud2643.t1

>Gcaud2643.t1 ID=Gcaud2643.t1|Name=Gcaud2643.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MEDYFSIDDILAGDHRIFTTFLHEGYNLGFLDPMGVSEWNASHRTPEELE
DNPNIDKDMPQGMRVALPFWLAQSLLTRNFVKLELPRCYGKQVRQALRAD
TRSVDLAAKCSSYFALGVQLAKLIVDVALPGVLVRAFAARCWGIADSAAF
SGDKGALAMKGLDWLECELFQEAHAMAVAIRRWKERRSDRISAMNNVLGK
RPREELGSPVTPSTRPRTS*

mRNA from alignment at NODE_145_length_43658_cov_4.983588:16417..17076+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2643.t1 ID=Gcaud2643.t1|Name=Gcaud2643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:16417..17076+ (Gracilaria caudata M_176_S67 male)
ATGGAGGATTACTTTTCAATCGACGACATTCTTGCTGGTGACCATCGCAT
CTTCACTACATTCCTTCATGAGGGCTATAACCTCGGTTTCCTTGACCCTA
TGGGTGTCTCAGAATGGAACGCCTCACACCGAACGCCGGAAGAACTGGAG
GACAACCCGAACATTGACAAGGATATGCCACAAGGCATGCGAGTAGCCCT
GCCTTTTTGGCTCGCCCAAAGTCTTCTCACTCGGAACTTCGTAAAACTCG
AGCTACCAAGATGCTATGGGAAGCAAGTGAGACAGGCTCTGCGCGCCGAT
ACGCGTTCAGTGGATCTAGCTGCAAAGTGCAGCTCGTACTTTGCTTTAGG
TGTACAGCTCGCCAAGCTGATTGTTGATGTGGCCTTGCCAGGTGTGCTTG
TCCGGGCGTTTGCAGCTCGGTGTTGGGGAATTGCTGACTCTGCGGCTTTT
TCGGGGGACAAAGGGGCTTTGGCTATGAAAGGGCTGGATTGGCTTGAATG
CGAGCTGTTTCAGGAAGCGCATGCCATGGCTGTCGCTATAAGAAGGTGGA
AGGAACGGCGCAGCGATAGAATATCTGCGATGAACAACGTGCTGGGCAAG
AGACCACGGGAAGAACTCGGTAGTCCGGTGACACCGTCAACTCGTCCGCG
AACAAGCTAA

Coding sequence (CDS) from alignment at NODE_145_length_43658_cov_4.983588:16417..17076+

>Gcaud2643.t1 ID=Gcaud2643.t1|Name=Gcaud2643.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:16417..17076+ (Gracilaria caudata M_176_S67 male)
ATGGAGGATTACTTTTCAATCGACGACATTCTTGCTGGTGACCATCGCAT
CTTCACTACATTCCTTCATGAGGGCTATAACCTCGGTTTCCTTGACCCTA
TGGGTGTCTCAGAATGGAACGCCTCACACCGAACGCCGGAAGAACTGGAG
GACAACCCGAACATTGACAAGGATATGCCACAAGGCATGCGAGTAGCCCT
GCCTTTTTGGCTCGCCCAAAGTCTTCTCACTCGGAACTTCGTAAAACTCG
AGCTACCAAGATGCTATGGGAAGCAAGTGAGACAGGCTCTGCGCGCCGAT
ACGCGTTCAGTGGATCTAGCTGCAAAGTGCAGCTCGTACTTTGCTTTAGG
TGTACAGCTCGCCAAGCTGATTGTTGATGTGGCCTTGCCAGGTGTGCTTG
TCCGGGCGTTTGCAGCTCGGTGTTGGGGAATTGCTGACTCTGCGGCTTTT
TCGGGGGACAAAGGGGCTTTGGCTATGAAAGGGCTGGATTGGCTTGAATG
CGAGCTGTTTCAGGAAGCGCATGCCATGGCTGTCGCTATAAGAAGGTGGA
AGGAACGGCGCAGCGATAGAATATCTGCGATGAACAACGTGCTGGGCAAG
AGACCACGGGAAGAACTCGGTAGTCCGGTGACACCGTCAACTCGTCCGCG
AACAAGCTAA