Gcaud2642.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2642.t1
Unique NameGcaud2642.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_145_length_43658_cov_4.983588contigNODE_145_length_43658_cov_4.983588:15552..15974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2642Gcaud2642Gracilaria caudata M_176_S67 malegeneNODE_145_length_43658_cov_4.983588 15552..15974 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2642.t1.start1Gcaud2642.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_145_length_43658_cov_4.983588 15552..15554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2642.t1.CDS1Gcaud2642.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_145_length_43658_cov_4.983588 15552..15974 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2642.t1.exon1Gcaud2642.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_145_length_43658_cov_4.983588 15552..15974 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2642.t1.stop1Gcaud2642.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_145_length_43658_cov_4.983588 15972..15974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2642.t1Gcaud2642.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_145_length_43658_cov_4.983588 15552..15974 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2642.t1 ID=Gcaud2642.t1|Name=Gcaud2642.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=141bp
MMEHEGEDEIQNNRVKSKHENRGAADQPDSDIEDAEVFITRAKKRKKGAH
GAIVKLTGEELLVNYVGQMTRHMGSIAKSLATEMSKSCEKDAARLSKEDI
NEIVKREVRESMLVTNNILAKMNLMLENISAKLNGSQSGV*
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spliced messenger RNA

>Gcaud2642.t1 ID=Gcaud2642.t1|Name=Gcaud2642.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:15552..15974+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGAGCATGAGGGGGAAGACGAAATTCAGAACAATCGCGTCAAGTC
CAAGCATGAGAACAGGGGCGCTGCAGACCAACCTGATTCAGACATAGAAG
ATGCTGAAGTGTTTATAACACGCGCTAAGAAACGGAAGAAAGGGGCGCAT
GGAGCTATTGTGAAACTGACAGGTGAAGAATTGTTGGTAAATTACGTGGG
TCAAATGACCAGACACATGGGCTCAATAGCCAAATCACTTGCGACGGAGA
TGTCTAAGAGCTGTGAAAAAGATGCTGCGCGTCTGTCTAAAGAAGATATC
AATGAAATTGTGAAACGAGAAGTCCGCGAGAGTATGCTTGTCACCAACAA
CATTCTTGCCAAAATGAACCTGATGCTGGAGAACATCAGTGCGAAGCTGA
ATGGGTCACAGTCTGGGGTGTGA
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protein sequence of Gcaud2642.t1

>Gcaud2642.t1 ID=Gcaud2642.t1|Name=Gcaud2642.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=141bp
MMEHEGEDEIQNNRVKSKHENRGAADQPDSDIEDAEVFITRAKKRKKGAH
GAIVKLTGEELLVNYVGQMTRHMGSIAKSLATEMSKSCEKDAARLSKEDI
NEIVKREVRESMLVTNNILAKMNLMLENISAKLNGSQSGV*
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mRNA from alignment at NODE_145_length_43658_cov_4.983588:15552..15974+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2642.t1 ID=Gcaud2642.t1|Name=Gcaud2642.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:15552..15974+ (Gracilaria caudata M_176_S67 male)
ATGATGGAGCATGAGGGGGAAGACGAAATTCAGAACAATCGCGTCAAGTC
CAAGCATGAGAACAGGGGCGCTGCAGACCAACCTGATTCAGACATAGAAG
ATGCTGAAGTGTTTATAACACGCGCTAAGAAACGGAAGAAAGGGGCGCAT
GGAGCTATTGTGAAACTGACAGGTGAAGAATTGTTGGTAAATTACGTGGG
TCAAATGACCAGACACATGGGCTCAATAGCCAAATCACTTGCGACGGAGA
TGTCTAAGAGCTGTGAAAAAGATGCTGCGCGTCTGTCTAAAGAAGATATC
AATGAAATTGTGAAACGAGAAGTCCGCGAGAGTATGCTTGTCACCAACAA
CATTCTTGCCAAAATGAACCTGATGCTGGAGAACATCAGTGCGAAGCTGA
ATGGGTCACAGTCTGGGGTGTGA
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Coding sequence (CDS) from alignment at NODE_145_length_43658_cov_4.983588:15552..15974+

>Gcaud2642.t1 ID=Gcaud2642.t1|Name=Gcaud2642.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=423bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:15552..15974+ (Gracilaria caudata M_176_S67 male)
ATGATGGAGCATGAGGGGGAAGACGAAATTCAGAACAATCGCGTCAAGTC
CAAGCATGAGAACAGGGGCGCTGCAGACCAACCTGATTCAGACATAGAAG
ATGCTGAAGTGTTTATAACACGCGCTAAGAAACGGAAGAAAGGGGCGCAT
GGAGCTATTGTGAAACTGACAGGTGAAGAATTGTTGGTAAATTACGTGGG
TCAAATGACCAGACACATGGGCTCAATAGCCAAATCACTTGCGACGGAGA
TGTCTAAGAGCTGTGAAAAAGATGCTGCGCGTCTGTCTAAAGAAGATATC
AATGAAATTGTGAAACGAGAAGTCCGCGAGAGTATGCTTGTCACCAACAA
CATTCTTGCCAAAATGAACCTGATGCTGGAGAACATCAGTGCGAAGCTGA
ATGGGTCACAGTCTGGGGTGTGA
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