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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092570.1 |
| Preferred name | qua-1 |
| PFAMs | AIG1,HH_signal,Hint |
| Max annot lvl | 2759|Eukaryota |
| GOs | GO:0002119,GO:0002164,GO:0005575,GO:0005576,GO:0007275,GO:0008150,GO:0009791,GO:0018996,GO:0031012,GO:0032501,GO:0032502,GO:0042303,GO:0044421,GO:0048856,GO:0060102,GO:0062023 |
| Evalue | 3.11e-17 |
| EggNOG OGs | KOG3638@1|root,KOG3638@2759|Eukaryota |
| Description | intein-mediated protein splicing |
| COG category | M |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2639.t1.start1 | Gcaud2639.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_145_length_43658_cov_4.983588 7660..7662 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2639.t1.stop1 | Gcaud2639.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_145_length_43658_cov_4.983588 8650..8652 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2639.t1 ID=Gcaud2639.t1|Name=Gcaud2639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=251bp
LPAFSKLSDFSYAPVRLRMTMTPRPSRRPGGFDDDDEEEFFGEEEEEEEE
DESSFFDIDDDGDDDLCFPANSIVNTLNRGDIAMHQLQIGDEVQVASNSE
KRYSQVFTFSHRVQTSLFPFKSLVTEKGTLTLTAGHYVYTRNAIIAAKSV
RTGDELQLADTSFAKVLDVQNVWRKGLYNPHTMEGELVVDGFRVSSYTTS
VEANVANALLTPLRAVYRLFGIDFTAGAVERPLLRWVLPFLPSGGSTVLL
* back to topspliced messenger RNA >Gcaud2639.t1 ID=Gcaud2639.t1|Name=Gcaud2639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=753bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:7660..8652+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
CTGCCTGCCTTTTCCAAGCTGTCGGACTTTTCGTACGCACCTGTACGACT
TCGGATGACTATGACACCGCGACCAAGTCGCCGACCCGGTGGCTTTGACG
ATGATGATGAAGAAGAGTTCTTCGGCgaagaggaagaggaagaggaagag
gaTGAAAGCAGTTTCTTCGATATCGACGATGATGGTGACGACGACCTTTG
TTTCCCGGCAAATTCCATTGTAAATACGTTAAACCGCGGAGACATTGCCA
TGCACCAACTCCAGATTGGTGATGAGGTGCAAGTGGCCAGCAATTCTGAA
AAACGTTACAGTCAGGTGTTCACGTTCTCCCACCGCGTCCAAACCTCTTT
ATTTCCGTTTAAGAGTTTGGTCACGGAGAAGGGAACGCTCACTCTTACTG
CTGGTCACTACGTGTACACAAGAAACGCTATCATTGCTGCCAAATCAGTG
CGAACGGGCGATGAATTACAACTAGCAGATACCTCATTTGCAAAGGTATT
AGATGTACAGAACGTGTGGAGAAAGGGGCTTTACAATCCGCACACCATGG
AGGGCGAACTGGTTGTTGATGGATTCCGTGTCAGTTCATATACGACGAGC
GTTGAAGCGAATGTTGCAAATGCGTTGCTAACGCCACTACGTGCGGTATA
TCGATTGTTTGGTATTGATTTTACCGCTGGCGCGGTTGAGCGACCGCTCC
TGAGGTGGGTGTTACCGTTTCTACCATCTGGGGGCAGCACGGTATTGCTT
TAG back to topprotein sequence of Gcaud2639.t1 >Gcaud2639.t1 ID=Gcaud2639.t1|Name=Gcaud2639.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=251bp
LPAFSKLSDFSYAPVRLRMTMTPRPSRRPGGFDDDDEEEFFGEEEEEEEE
DESSFFDIDDDGDDDLCFPANSIVNTLNRGDIAMHQLQIGDEVQVASNSE
KRYSQVFTFSHRVQTSLFPFKSLVTEKGTLTLTAGHYVYTRNAIIAAKSV
RTGDELQLADTSFAKVLDVQNVWRKGLYNPHTMEGELVVDGFRVSSYTTS
VEANVANALLTPLRAVYRLFGIDFTAGAVERPLLRWVLPFLPSGGSTVLL
* back to topmRNA from alignment at NODE_145_length_43658_cov_4.983588:7660..8652+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2639.t1 ID=Gcaud2639.t1|Name=Gcaud2639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=993bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:7660..8652+ (Gracilaria caudata M_176_S67 male)
CTGCCTGCCTTTTCCAAGCTGTCGGACTTTTCGTACGCACCTGTACGACT
TCGGATGACTATGAGTAAGTCCTACACTTTCACTTTTACAGTTTGCCTTC
TATTAATTACCGCCTGCACAGCGTCCATCGCTCCTTGCGACGAGAACGAC
CCAAAGTCATTATGTCTCACCCCGCTGAAGCACCGTAACTGGTACGGCAC
GTCCGCTACTCTGCGCAAATCGAGCGGGTCGCGTGGTTCGAGCGGGTCGC
GTGGTTCGAGCGGGTCGCGTGGTTCAAGCGGATCCACCTCTCGACGAAGG
CCGTTCAGGCGACCAAGTCGCCGACCCGGTGGCTTTGACGATGATGATGA
AGAAGAGTTCTTCGGCgaagaggaagaggaagaggaagaggaTGAAAGCA
GTTTCTTCGATATCGACGATGATGGTGACGACGACCTTTGTTTCCCGGCA
AATTCCATTGTAAATACGTTAAACCGCGGAGACATTGCCATGCACCAACT
CCAGATTGGTGATGAGGTGCAAGTGGCCAGCAATTCTGAAAAACGTTACA
GTCAGGTGTTCACGTTCTCCCACCGCGTCCAAACCTCTTTATTTCCGTTT
AAGAGTTTGGTCACGGAGAAGGGAACGCTCACTCTTACTGCTGGTCACTA
CGTGTACACAAGAAACGCTATCATTGCTGCCAAATCAGTGCGAACGGGCG
ATGAATTACAACTAGCAGATACCTCATTTGCAAAGGTATTAGATGTACAG
AACGTGTGGAGAAAGGGGCTTTACAATCCGCACACCATGGAGGGCGAACT
GGTTGTTGATGGATTCCGTGTCAGTTCATATACGACGAGCGTTGAAGCGA
ATGTTGCAAATGCGTTGCTAACGCCACTACGTGCGGTATATCGATTGTTT
GGTATTGATTTTACCGCTGGCGCGGTTGAGCGACCGCTCCTGAGGTGGGT
GTTACCGTTTCTACCATCTGGGGGCAGCACGGTATTGCTTTAG back to topCoding sequence (CDS) from alignment at NODE_145_length_43658_cov_4.983588:7660..8652+ >Gcaud2639.t1 ID=Gcaud2639.t1|Name=Gcaud2639.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=753bp|location=Sequence derived from alignment at NODE_145_length_43658_cov_4.983588:7660..8652+ (Gracilaria caudata M_176_S67 male)
CTGCCTGCCTTTTCCAAGCTGTCGGACTTTTCGTACGCACCTGTACGACT
TCGGATGACTATGACACCGCGACCAAGTCGCCGACCCGGTGGCTTTGACG
ATGATGATGAAGAAGAGTTCTTCGGCgaagaggaagaggaagaggaagag
gaTGAAAGCAGTTTCTTCGATATCGACGATGATGGTGACGACGACCTTTG
TTTCCCGGCAAATTCCATTGTAAATACGTTAAACCGCGGAGACATTGCCA
TGCACCAACTCCAGATTGGTGATGAGGTGCAAGTGGCCAGCAATTCTGAA
AAACGTTACAGTCAGGTGTTCACGTTCTCCCACCGCGTCCAAACCTCTTT
ATTTCCGTTTAAGAGTTTGGTCACGGAGAAGGGAACGCTCACTCTTACTG
CTGGTCACTACGTGTACACAAGAAACGCTATCATTGCTGCCAAATCAGTG
CGAACGGGCGATGAATTACAACTAGCAGATACCTCATTTGCAAAGGTATT
AGATGTACAGAACGTGTGGAGAAAGGGGCTTTACAATCCGCACACCATGG
AGGGCGAACTGGTTGTTGATGGATTCCGTGTCAGTTCATATACGACGAGC
GTTGAAGCGAATGTTGCAAATGCGTTGCTAACGCCACTACGTGCGGTATA
TCGATTGTTTGGTATTGATTTTACCGCTGGCGCGGTTGAGCGACCGCTCC
TGAGGTGGGTGTTACCGTTTCTACCATCTGGGGGCAGCACGGTATTGCTT
TAG back to top
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