Gcaud2627.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2627.t1
Unique NameGcaud2627.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length71
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:18500..18946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2627Gcaud2627Gracilaria caudata M_176_S67 malegeneNODE_205_length_37462_cov_4.544219 18500..18946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2627.t1Gcaud2627.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_205_length_37462_cov_4.544219 18500..18946 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2627.t1.start1Gcaud2627.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_205_length_37462_cov_4.544219 18500..18502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2627.t1.CDS1Gcaud2627.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 18500..18581 +
Gcaud2627.t1.CDS2Gcaud2627.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 18699..18815 +
Gcaud2627.t1.CDS3Gcaud2627.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 18933..18946 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2627.t1.exon1Gcaud2627.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 18500..18581 +
Gcaud2627.t1.exon2Gcaud2627.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 18699..18815 +
Gcaud2627.t1.exon3Gcaud2627.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 18933..18946 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2627.t1.intron1Gcaud2627.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_205_length_37462_cov_4.544219 18582..18698 +
Gcaud2627.t1.intron2Gcaud2627.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_205_length_37462_cov_4.544219 18816..18932 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2627.t1.stop1Gcaud2627.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_205_length_37462_cov_4.544219 18944..18946 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2627.t1 ID=Gcaud2627.t1|Name=Gcaud2627.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=71bp
MSSAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDE
QNAAAEAARLNALKRSGFGK*
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spliced messenger RNA

>Gcaud2627.t1 ID=Gcaud2627.t1|Name=Gcaud2627.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=213bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:18500..18946+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCGCTGCTGCGACAATAAGGTATTTGTGGGCCAAGGATCCCGT
GGTTTGCTTCGCTTGTGTGCTAGGTGCAGTTGGTGTGATTCTGCCTGTGA
CCGTGCCTAAGGTCTGGGGTCGCTATCCAGATCAAATTGCCAGGGACGAG
CAAAATGCTGCCGCAGAAGCTGCGCGTTTGAACGCGCTCAAAAGATCAGG
CTTTGGGAAGTGA
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protein sequence of Gcaud2627.t1

>Gcaud2627.t1 ID=Gcaud2627.t1|Name=Gcaud2627.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=71bp
MSSAAATIRYLWAKDPVVCFACVLGAVGVILPVTVPKVWGRYPDQIARDE
QNAAAEAARLNALKRSGFGK*
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mRNA from alignment at NODE_205_length_37462_cov_4.544219:18500..18946+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2627.t1 ID=Gcaud2627.t1|Name=Gcaud2627.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:18500..18946+ (Gracilaria caudata M_176_S67 male)
ATGAGCTCCGCTGCTGCGACAATAAGGTATTTGTGGGCCAAGGATCCCGT
GGTTTGCTTCGCTTGTGTGCTAGGTGCAGTTGGTATGGGCTACTTTCGTT
GTTGAAAGCAGAGGCTTTCTAACCTTTCTTGTTCATGGAGGAAAAAGAAT
GCTAACGTTCTATGTTTTTCGTGCCGATGACCGCCGTTTTGACTGACAGG
TGTGATTCTGCCTGTGACCGTGCCTAAGGTCTGGGGTCGCTATCCAGATC
AAATTGCCAGGGACGAGCAAAATGCTGCCGCAGAAGCTGCGCGTTTGAAC
GCGCTCAAAAGATCAGGTATGCCTTTTTGACTCGGCTTTTATTGGATTGA
AGAAGTTTATAGTATCCTAACCTAAATCTATCACACTACCTGCCATTTTG
GTTTCTATCTTTTCCTTTGTGGATCTGACACAGGCTTTGGGAAGTGA
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Coding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:18500..18946+

>Gcaud2627.t1 ID=Gcaud2627.t1|Name=Gcaud2627.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=213bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:18500..18946+ (Gracilaria caudata M_176_S67 male)
ATGAGCTCCGCTGCTGCGACAATAAGGTATTTGTGGGCCAAGGATCCCGT
GGTTTGCTTCGCTTGTGTGCTAGGTGCAGTTGGTGTGATTCTGCCTGTGA
CCGTGCCTAAGGTCTGGGGTCGCTATCCAGATCAAATTGCCAGGGACGAG
CAAAATGCTGCCGCAGAAGCTGCGCGTTTGAACGCGCTCAAAAGATCAGG
CTTTGGGAAGTGA
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